mRNA_C-australica_Contig_995.1.3 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A835ZAQ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ3_9STRA) HSP 1 Score: 270 bits (689), Expect = 5.350e-80 Identity = 179/457 (39.17%), Postives = 258/457 (56.46%), Query Frame = 2
Query: 2 GSKGSGKSTLLRSMFGDEAASGGVLEDEGVAVMEVDSSISMAGDKALSMGAKDVVVSCASSDVIVFNVLQQDLHRA--GALSELMPALEEALALSEDALEEGPKKKELIIVVRDFDGDSSEEAALAGSALATLEGMWESAARPEAATGAKLADYFTVQMEYLPHHTLASSAFSXXXXXXXXXXXXXSPQA-AAGVLERLQKMSALA-GPDVSAPSAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFP-GLDEEFGEHQDDIAEDVMAEFKDLCSGVGGS-----VVGKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPGLGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAFASTNVRADAMFFEFAPTGEEIEGP 1342
GS+G+GK+TL++SMFG ++ D+G+ ++E +SS S+A + +D + A++DV V+NV QDL R+ L+EL ALE LA S E GPK L+ VRDFDG+ + + + + L+ MW+ A RP L D V +LP H+LA+ ++ + A AA VL+ LQ A A G V + S E+ AA V A Q A++ N V LS + GLD EFG H D I ++ + ++ + V+GKKR EL +AM R+A YA Q LL+AAA KFR+ A +R+ P LGK+M A++ +D Y +A LK K + +ER+ L +DLR A ERLQLAKLQG + + +R RPV + HWLLP+PFGTDA +S+L D+ AF+S ++AD+++FEFAP +E+ GP
Sbjct: 48 GSQGTGKTTLMKSMFGPAVEQETLIADDGLVLLEAESSCSLASR---AKAVRDAAAALAAADVAVYNVFMQDLQRSVDATLTELQMALEPFLAASAGQPEGGPKP--LVFAVRDFDGEEASQEQVEAAMTEALQRMWQRAVRPGDFAKKSLEDVLDVSFSFLPSHSLAAGEYAHAAAALRTRLAEGAKSATAADVLKTLQAAPAQATGAPVESTSPAELAAALVAKTAAAQALATFKNRVSALSASLADGLDPEFGAHVDIIVDEALDQYSQGVAAXXXXXXXXXVIGKKRGELRAAMLREAHGLYAAQFRLLRAAAADKFRRSPATLRISPTLGKDMDAAMKESDSYMAESAKGLKSKYLPALLDAERRELGSDLRAVAAERLQLAKLQGMSAAKSR---RPVGIALHWLLPEPFGTDASRSVLGAGDEPAFSSERLKADSLWFEFAPL-DEVPGP 495
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: D7FSH8_ECTSI (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH8_ECTSI) HSP 1 Score: 237 bits (604), Expect = 3.830e-67 Identity = 166/493 (33.67%), Postives = 259/493 (52.54%), Query Frame = 2
Query: 2 GSKGSGKSTLLRSMFGDEAASGGVLEDEGVAVMEVDSSISMAGD-KALSMGAKDVVVSCASSDVIVFNVLQQDLHRAGALSELMPALEEALALSEDALEEGPKKKELIIVVRDF-DGDSSEEAALAGSALATLEGMWESAARPEAATGAKLADYFTVQMEYLPHHTLASSAFSXXXXXXXXXXXXXSPQAAAGVLERL-QKMSALAGPDVSAPSAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFPGLDEEFGEHQDDIAEDVMAEFKDLCSGVGGS--VVGKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPGLGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAFASTNVRADAMFFEF-APTGEEIEGPPTV-------RGVYDSHEFSSIQVRKCPYESHDS*LPPSP 1441
G++GSGKSTL+++MFG A++ +A++E SS + + + +GA +VS A SD ++NVL DL R ALS++ PALEE L L ED + + + K ++ VRD DGD +E G L+ +W +A +PE G+ L+D V++ LPHH+ AS + + A + RL Q++S+ AGP + + + A+ + A +C AS+ +LV + F L+ +FGE D + + V+ E+ + GV G+ V+ +K+ EL R+ R+A+Q+ LL+ AA KF + L+ +RV P +GK+M +A++ ADK+F T + + S S RK L ++REFA ERLQL + QG + +PV + FHW LPKPFG AR+S L + D + +A MF E P+ +E+ P + V + S I VR+ HD L +P
Sbjct: 67 GAQGSGKSTLMKTMFGQGASN--------LALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDALSDVQPALEELLTLYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGE---RLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFKSLVGRMGAGFEELNTDFGELCDGVIDTVLQEYDEAVDGVSGASGVLSRKKAELKRHCLRELGLRHADQVDLLRTAARAKFDETLSGLRVSPDVGKQMMDAIQEADKFFAKTVRGMNSRHGSWPSNSVRKELRDEMREFASERLQLVQAQGGMVRMQK--RKPVGMAFHWFLPKPFGQQARESRLDLTDPMRYTYKANQASPMFMELLCPSAQEVSLPSEGIEETEIHKDVKQLQKVSQILVRR-----HDERLTKAP 541
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: M2XGH2_GALSU (GTP-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XGH2_GALSU) HSP 1 Score: 114 bits (286), Expect = 2.390e-23 Identity = 115/407 (28.26%), Postives = 186/407 (45.70%), Query Frame = 2
Query: 149 GAKDVVVSCASSDVIVFNVLQQDLHR--AGALSELMPALEEALALSEDALEEGPKKKELIIVVRDFDGDSSEEAALAGSALATLEGMWESAARPEAATGAK-LADYFTVQMEYLPHHTLASSAF---------------SXXXXXXXXXXXXXSPQAAAG-----VLERLQKMSALAGPDVSAPSAKEMKAAAVGGKAVEQCFASYTNLVLGLS-KAFPG-LDEEFGEHQDDIAEDVMAEFKDLCSGVGGS-VVGKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPGLGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVD-DKAAFASTNVR 1288
G V ++ A SDVIV +V +D+ R A L A+E+ + L + KK L++V RD + + + L + + + AR E +TG K ++D F ++ PH+ +F S +P V ERL S L V+AP EM A EQ +Y + V K G + + FG+ ++ +++A + D + G+ +KRK L+ + D Y++ L LK + FR+ L+++++ + K+++ A++ ADKYF S A LKCK SERK L++ +RE A ERLQLA++QGA R+ P++L+ ++L P PFG D+R + +K F N R
Sbjct: 113 GESSVRLATAVSDVIVLHVHSRDVGRLEATGLPLFKNAIEDVMKLRSLGVLSSHSKKLLVVVFRDVESEETNREDLITAFIEDCNSLL--GAREEGSTGIKKISDLFDIEFALFPHYVFHRQSFERTATSLRERFREPTSDDYFFIEDRYSNPTPAMEISLHITQVWERLGIESYL----VTAPE-YEMNATFHCDNCFEQALTTYFSRVREWKRKTEEGRIIQNFGKESTELRNEILALYDDEAAQYKGTKAFERKRKSLLERVQLDLYTMYSKLLNKLKEVSFDIFRESLSHIQISDNVEKDVNKAIKAADKYFCSRAELLKCKGTSWQFDSERKELLSVMRENATERLQLARIQGAYVPPARM---PISLSLNYLHPNPFGKDSRYEDFQAEKEKVKFDPGNTR 509
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A7S2FW41_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW41_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.310e-20 Identity = 104/351 (29.63%), Postives = 163/351 (46.44%), Query Frame = 2
Query: 236 LSELMPALEEALALSEDA-LEEGPKKKELIIVVRDFDGDSSEEAALAGSALATLEGMWESAARPEAATGAKLADYFTVQMEYLPHHTLASSAFSXXXXXXXXXXXXXSPQAAAGVLERLQKMSALAGPDVS-APSAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFPGLD-EEFGEHQDDIAEDVMAEFKDLCSGVGGSVV-GKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPG-LGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGT-DARQSILSVDDKAAF 1270
LS+L +E LA + D LEEG K + + D + +SSE AL S L MW +A +P A L+D+ V + LP + A + S A+AGV RL + A G AP+ +M++ A+E F ++ + + LS A +D EEFG DD + + F + G+ K KEL+S + + Y +LA L A + ++ + + G L K+M ++ AD +F + A + C+ S+ ER+A+++ +R F ERLQ+ L G R +PVA++ HWL+ P DA Q LS DD+ +
Sbjct: 76 LSDLQTKVEALLARTADGTLEEGATK--VFVACSDCEAESSEVEALVRSELVA---MWANAVKPAQYEAAPLSDFVDVDVRVLPDSRNPTCAAAVDGLK--------SALASAGVSNRLDGVVASGGGSGGGAPAQADMESLFACHGAMEGAFQTFVDQLPALSAALAEIDVEEFGAACDDALDAAVQHFNGASAAFDGTASKAAKGKELVSKVHGELRPLYLAKLAELNELANSRLKKSFRKLSITDGSLLKDMEAGVKDADAFFSANAKKMVCRGAGWSANQERRAMVSKMRAFVKERLQVLHLGGKYVPGMR--RKPVAVSLHWLVRHPLQLLDAIQDSLSFDDEMEY 411
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A8J5XDG1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDG1_DIALT) HSP 1 Score: 102 bits (253), Expect = 3.360e-19 Identity = 146/472 (30.93%), Postives = 209/472 (44.28%), Query Frame = 2
Query: 2 GSKGSGKSTLLRSMFG-----DEAASGGVL-EDEGVAVMEVDSSISMAGDKALSMGAKDVVVSCASSDVIVFNV-----LQQDLHRAGALSELMPALEEALALSEDALEEGPKKKELIIVVRDFDGDSSEEA-ALAGSALATLEGMWESAARPEAATGA---KLADYFTVQMEYLPHHTLASSAF----SXXXXXXXXXXXXXSPQAAAGVLERLQKMSALAGPDVSAP--SAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFPGLDEEFGEHQDDIAED-------VMAEFKDLCSGVGGSVV-GKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPG-LGKEMSNALEVADKYFRSTAPALKCKLVQD--SSQSERKALITDLREFADERLQLAKLQGA-TQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAF---ASTNVRADAMFFE 1309
G + SGK L+ + G +E VL EDE +AV+ GD A D V+ A S V+V L + G LSEL PA+E L +S P+K+ LI+V+R+++ D+S A AL +A LE MW AA P A +G LAD VQ+ LP S+AF S XXXXXXXXXX AA +L L S LA V SA E+ AA +A F + + L D+ E +A++ + + D GS V K+R L SA+ D + L L + A + AN+ G G L ++ A++ FR A L + S E K L +L++ + E ++ A+LQG + R+ P ++ HWL P PFG D R LS D+ ++ A + +R + M F+
Sbjct: 50 GPRKSGKGVLVGKLLGAPVEDEEGELECVLSEDEKLAVLNSAGFGERPGDAPAFDEAADTAVAVALSQVVVLTAFFREFLAEPADAVGRLSELRPAMELLLRMSRQPGASPPRKRSLILVLREYEPDASASAQALRERFVALLEEMW--AALPAARSGGGAPALADLLDVQVAPLPSPKADSAAFTAAASELRXXXXXXXXXXXXXPAAQLLFSLAAASKLASSSVGPGFVSADELAAALACARAASAAFDEFASATATLHARAASRDDPLREPPAALADECSKALGAALRAYDDATVAHAGSDVRAKRRATLRSAILADLRPVHTHALQLARIGAVIDLSKRAANLTAGEGNLHADLQAAVDDVTASFREKAAMLTMREAAGAWSCGLEEKMLQQELQQMSAEMVRRAQLQGLYAPPAGRV---PTGVSLHWLHPNPFGKDLRNDQLSATDRLSYSQKAKSLLRLEPMRFD 516
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A6H5JTE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE5_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 9.040e-11 Identity = 49/134 (36.57%), Postives = 65/134 (48.51%), Query Frame = 2
Query: 1064 SQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAFASTNVRADAMFFEF-APTGEEIEGPPTVRGVYDSHE-------FSSIQVRKCPYESHDS*LPPSP 1441
S S RK L ++REFA ERLQL + QG + +PV + FHW LPKPFG AR+S L + D + +A MF E P +E+E P + H+ S I VR+ HD L +P
Sbjct: 10 SNSVRKELRDEMREFASERLQLVQAQGGMVRMQK--RKPVGMAFHWFLPKPFGQQARESRLDLTDPMRYTYKANQASPMFMELLCPPAQEVEFPSEGTEETEIHKDVKQLQKVSQILVRR-----HDERLTKAP 136 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_995.1.3 >prot_C-australica_Contig_995.1.3 ID=prot_C-australica_Contig_995.1.3|Name=mRNA_C-australica_Contig_995.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=462bp MFGDEAASGGVLEDEGVAVMEVDSSISMAGDKALSMGAKDVVVSCASSDVback to top mRNA from alignment at C-australica_Contig_995:35..3150+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_995.1.3 ID=mRNA_C-australica_Contig_995.1.3|Name=mRNA_C-australica_Contig_995.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3116bp|location=Sequence derived from alignment at C-australica_Contig_995:35..3150+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_995:35..3150+ >mRNA_C-australica_Contig_995.1.3 ID=mRNA_C-australica_Contig_995.1.3|Name=mRNA_C-australica_Contig_995.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1386bp|location=Sequence derived from alignment at C-australica_Contig_995:35..3150+ (Chrysoparadoxa australica CS_1217)back to top |