mRNA_C-australica_Contig_993.16.5 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_993.16.5
Unique NamemRNA_C-australica_Contig_993.16.5
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_993.16.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_993contigC-australica_Contig_993:12415..15452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2111
Hectar predicted targeting categoryother localisation
Exons8
Cds size1770
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_993.16.5prot_C-australica_Contig_993.16.5Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_993 12624..15061 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588861.1012766-UTR-C-australica_Contig_993:12414..124951682588861.1012766-UTR-C-australica_Contig_993:12414..12495Chrysoparadoxa australica CS_1217UTRC-australica_Contig_993 12415..12495 +
1682588861.1120932-UTR-C-australica_Contig_993:12568..126231682588861.1120932-UTR-C-australica_Contig_993:12568..12623Chrysoparadoxa australica CS_1217UTRC-australica_Contig_993 12569..12623 +
1682588861.1844168-UTR-C-australica_Contig_993:15061..151101682588861.1844168-UTR-C-australica_Contig_993:15061..15110Chrysoparadoxa australica CS_1217UTRC-australica_Contig_993 15062..15110 +
1682588861.1925347-UTR-C-australica_Contig_993:15296..154521682588861.1925347-UTR-C-australica_Contig_993:15296..15452Chrysoparadoxa australica CS_1217UTRC-australica_Contig_993 15297..15452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588861.1224294-CDS-C-australica_Contig_993:12623..126531682588861.1224294-CDS-C-australica_Contig_993:12623..12653Chrysoparadoxa australica CS_1217CDSC-australica_Contig_993 12624..12653 +
1682588861.1320975-CDS-C-australica_Contig_993:12739..135611682588861.1320975-CDS-C-australica_Contig_993:12739..13561Chrysoparadoxa australica CS_1217CDSC-australica_Contig_993 12740..13561 +
1682588861.143232-CDS-C-australica_Contig_993:13751..140901682588861.143232-CDS-C-australica_Contig_993:13751..14090Chrysoparadoxa australica CS_1217CDSC-australica_Contig_993 13752..14090 +
1682588861.152969-CDS-C-australica_Contig_993:14308..145811682588861.152969-CDS-C-australica_Contig_993:14308..14581Chrysoparadoxa australica CS_1217CDSC-australica_Contig_993 14309..14581 +
1682588861.164169-CDS-C-australica_Contig_993:14651..147741682588861.164169-CDS-C-australica_Contig_993:14651..14774Chrysoparadoxa australica CS_1217CDSC-australica_Contig_993 14652..14774 +
1682588861.1760204-CDS-C-australica_Contig_993:14878..150611682588861.1760204-CDS-C-australica_Contig_993:14878..15061Chrysoparadoxa australica CS_1217CDSC-australica_Contig_993 14879..15061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_993.16.5

>prot_C-australica_Contig_993.16.5 ID=prot_C-australica_Contig_993.16.5|Name=mRNA_C-australica_Contig_993.16.5|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=590bp
MVKFQSDGTMEVCTNPRLDKRLEPFQPGVADRDLLLRRLLCGYLMIHLVF
IRRQTAAGGAPVKLGTKNLHELKGKDAGDPELKKWREQVVQHTLSLTGEE
LGEDWKGSFGHHINSSFDDFMGEDRVLNTGVALASLLGMKRGGAFWRANH
VVKSCSMLCKHGVTPSFETLCGPIPDAVLNGYEEKKASFPMLPNMQVDEY
TFVHLIHDLAQANKKQQQQRNQNQAAQPCGMMNGLRELKILMNQAKSKDG
KFFETTGCNQFAKKLLGLFNGDPEANKSGRKRKKAMESHFSFEGGGKDTM
KKMIHDAYEVKVSQIDNVVELLNARIPGWDMLLLAELQQRHHDYSEQLSS
GQAVAEPSMPSIESCEQTGSEEQNARRAALKGMADAIKGSTSPKDFQALA
QALHYVEKILLPHRNGYQTGKESASLVMASGPSSEHVSSAVKGAKKSSAP
SHLVEYGPLGKGVMALCIGRIAWAEEKKWRPKLYVYGQAKPPNAFLAQRL
DVKVHPGFWKHFSNGMKHMWVEEQERFKEVFAIAGKEGLTELIDSCMEIA
KVIKESASVTPSNVTTDLFTDLFSRTTHMNSETHESKPA*
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mRNA from alignment at C-australica_Contig_993:12415..15452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_993.16.5 ID=mRNA_C-australica_Contig_993.16.5|Name=mRNA_C-australica_Contig_993.16.5|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3038bp|location=Sequence derived from alignment at C-australica_Contig_993:12415..15452+ (Chrysoparadoxa australica CS_1217)
CGCTGCATCACCCCCAGCGCCCCCAACACCCCCAGGGAAGAAAGCCTCAA
AGCTTGACCGCAAGCAGGCCAGGAAAGCCAGGTGTGTGTTGGGCTCACCC
ATGCCCAACACCATCATTTTCCTTCGTGGCTGACAGCATTATTTATTTCC
TTAGGTTGGAGGATATCCCAATCAATGCCACAAGGGTGTACGAGAACCTT
CTGTTCAGGATGGTGAAATTCCAGAGTGATGGAACCATGGTGAGCTAGAA
GGTCCCATTTTTCCACACCAGGCTTGCACCTCACCTCCTAACGTTGCTAA
TGACTAACTAACTTGGGCCTTTCAGGAGGTTTGTACAAACCCCAGGCTGG
ACAAAAGACTGGAGCCATTCCAACCAGGAGTGGCTGACCGTGATCTTCTG
CTGCGAAGGCTCCTGTGCGGGTACTTGATGATCCATCTGGTCTTCATCAG
GAGGCAGACAGCAGCTGGCGGTGCCCCTGTTAAGTTGGGCACGAAGAACC
TCCACGAGCTCAAGGGCAAAGATGCAGGTGACCCTGAACTCAAGAAGTGG
AGGGAGCAGGTGGTGCAGCACACTCTCTCTCTCACCGGTGAAGAGCTTGG
TGAAGACTGGAAGGGTTCCTTTGGACACCACATCAACTCCTCCTTTGACG
ACTTCATGGGAGAGGACCGTGTGCTAAACACCGGAGTGGCGTTGGCCTCT
CTGCTTGGCATGAAGAGGGGTGGGGCTTTCTGGAGGGCCAACCATGTTGT
CAAGTCCTGCAGCATGCTCTGCAAGCATGGCGTCACCCCATCCTTCGAGA
CCCTCTGCGGACCCATCCCCGATGCAGTGCTGAACGGCTATGAGGAGAAG
AAGGCATCCTTTCCAATGCTGCCCAACATGCAGGTAGATGAGTACACCTT
TGTGCATCTCATTCATGACCTGGCTCAAGCAAACAAGAAACAGCAGCAGC
AGCGTAACCAGAACCAGGCAGCCCAGCCCTGTGGCATGATGAACGGTCTC
AGGGAGCTCAAGATCCTCATGAACCAGGCCAAGAGCAAGGACGGCAAGTT
CTTTGAGACTACTGGCTGCAACCAGTTCGCCAAGAAGCTGCTGGGCCTGT
TCAACGGTGATCCTGAGGCCAATAAGAGCGGGCGGAAGCGCAAAAAGGTG
ATGCCTCATTGACTTAAGAACTAAGCCTTTAACACTGCTCTAACACTAAC
TGCCTCTACTCCAATGCATTTATTTTATCTTCTCTGTTTCTTTACTTCGT
CAATTCGCTAGCACTAACCCTCTAATGTATTTATACCATCTTTTGACCGA
CTCCCTTTGCTTTCTCCATGACCGCCTGACTGCCCAGGCTATGGAAAGCC
ACTTCAGCTTTGAGGGAGGCGGCAAAGACACCATGAAAAAGATGATCCAC
GATGCATATGAGGTCAAGGTCTCCCAGATTGACAACGTGGTGGAGCTACT
CAACGCTCGTATCCCTGGATGGGACATGCTGCTTCTTGCTGAGCTCCAGC
AGAGGCACCACGACTACAGCGAGCAGCTCAGCTCAGGGCAGGCAGTAGCA
GAGCCGAGCATGCCCTCCATTGAGAGCTGCGAGCAAACCGGCTCTGAAGA
GCAGAACGCCAGGAGGGCCGCGTTGAAGGGCATGGCTGACGCCATCAAGG
GGTCAACATCTCCGAAGGACTTTCAGGTGTTAAGAGAGCGCCTTTTGACC
TGAATCATCATCTACCCTGTCCTCCCCACTGACCCTAGTCTCTCTCTCTC
TGACTTTGTTTAAGCGATGTAGATAGATTTCTCTGGCATTACGTCGTTAC
CAATTCTAATTCTAATACATCATTGTCTCCCAGATAGATTTCTCTAGCAT
GAACTCGTTGCCAATTCTTGTCCATATTTATCTTCTTTCTTCAGGCATTG
GCACAGGCCCTACATTATGTGGAGAAGATTCTTCTTCCTCATAGGAATGG
GTATCAGACGGGAAAGGAAAGCGCATCGCTGGTGATGGCCAGTGGACCTT
CATCAGAGCATGTCAGCAGCGCCGTCAAGGGGGCCAAGAAGAGCTCTGCT
CCGTCTCATCTTGTCGAATATGGCCCACTAGGCAAGGGAGTGATGGCGCT
GTGCATTGGACGCATTGCGTGGGCTGAGGAGAAGAAGTGGCGTCCAAAAC
TCTACGTCTACGGCCAGGTAGTACCTCTCATTCCTTAGCTCACGTATGAC
CCTTCCCTGACTCAAACTCTTGCCAATTATTCCGCAGGCCAAGCCTCCTA
ATGCATTCTTGGCTCAGCGGCTGGACGTGAAAGTGCATCCCGGGTTTTGG
AAGCATTTTTCAAACGGCATGAAGCACATGTGGGTGGAGGAGCAGGAGCG
CTTCAAGGAGGTATACTCCACCTTCATCCCTCCCTGCTATCTCTTTATGT
ATATATCTCTTTCTTTGACTGGCTTTTCCCTTTGCTGATGACCCCAACTC
TCTCCTCTTGCCAGGTCTTTGCCATCGCCGGCAAAGAAGGCCTGACTGAG
CTGATTGACTCATGCATGGAAATTGCCAAGGTGATAAAAGAAAGCGCCTC
TGTAACCCCAAGCAACGTCACCACTGATCTCTTCACTGATCTCTTCTCCC
GCACTACTCATATGAACAGTGAGACTCATGAATCCAAGCCCGCATGATGT
GCAGCTGGGGTCAGGTCCTTAACTTGGGGCCTATGGCTACCACTAGGTTC
GTCTGCGTTTTTAGCGCAGCTGACCATCCATGCTAGCCTTGATTCATTGA
CTGGTGACAAGAACCAGCCTCTCTAACCTGCATGCCACTCACCTGCACAA
GTGTCACCAAATGTTCGTCATAAGCGGCAAATAAACTTGCATTGAGGGTA
ACCCAGGGTCATACTAATGATGCTAGCTGTAGGGCTTCTCTACTTAGGCT
GTCAGGGGAGGCAGGGGAGATGCCGTGGCGAGCAGAGGGTCAATGTTGGT
TTGTACCTTGCCATCATGCTTTTCGGCGCAAAGGATGCGGGAGACCACAT
GGTCCCCAACAATAAAGCAATGAACTAGGCTAAGCGTC
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Coding sequence (CDS) from alignment at C-australica_Contig_993:12415..15452+

>mRNA_C-australica_Contig_993.16.5 ID=mRNA_C-australica_Contig_993.16.5|Name=mRNA_C-australica_Contig_993.16.5|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1770bp|location=Sequence derived from alignment at C-australica_Contig_993:12415..15452+ (Chrysoparadoxa australica CS_1217)
ATGGTGAAATTCCAGAGTGATGGAACCATGGAGGTTTGTACAAACCCCAG
GCTGGACAAAAGACTGGAGCCATTCCAACCAGGAGTGGCTGACCGTGATC
TTCTGCTGCGAAGGCTCCTGTGCGGGTACTTGATGATCCATCTGGTCTTC
ATCAGGAGGCAGACAGCAGCTGGCGGTGCCCCTGTTAAGTTGGGCACGAA
GAACCTCCACGAGCTCAAGGGCAAAGATGCAGGTGACCCTGAACTCAAGA
AGTGGAGGGAGCAGGTGGTGCAGCACACTCTCTCTCTCACCGGTGAAGAG
CTTGGTGAAGACTGGAAGGGTTCCTTTGGACACCACATCAACTCCTCCTT
TGACGACTTCATGGGAGAGGACCGTGTGCTAAACACCGGAGTGGCGTTGG
CCTCTCTGCTTGGCATGAAGAGGGGTGGGGCTTTCTGGAGGGCCAACCAT
GTTGTCAAGTCCTGCAGCATGCTCTGCAAGCATGGCGTCACCCCATCCTT
CGAGACCCTCTGCGGACCCATCCCCGATGCAGTGCTGAACGGCTATGAGG
AGAAGAAGGCATCCTTTCCAATGCTGCCCAACATGCAGGTAGATGAGTAC
ACCTTTGTGCATCTCATTCATGACCTGGCTCAAGCAAACAAGAAACAGCA
GCAGCAGCGTAACCAGAACCAGGCAGCCCAGCCCTGTGGCATGATGAACG
GTCTCAGGGAGCTCAAGATCCTCATGAACCAGGCCAAGAGCAAGGACGGC
AAGTTCTTTGAGACTACTGGCTGCAACCAGTTCGCCAAGAAGCTGCTGGG
CCTGTTCAACGGTGATCCTGAGGCCAATAAGAGCGGGCGGAAGCGCAAAA
AGGCTATGGAAAGCCACTTCAGCTTTGAGGGAGGCGGCAAAGACACCATG
AAAAAGATGATCCACGATGCATATGAGGTCAAGGTCTCCCAGATTGACAA
CGTGGTGGAGCTACTCAACGCTCGTATCCCTGGATGGGACATGCTGCTTC
TTGCTGAGCTCCAGCAGAGGCACCACGACTACAGCGAGCAGCTCAGCTCA
GGGCAGGCAGTAGCAGAGCCGAGCATGCCCTCCATTGAGAGCTGCGAGCA
AACCGGCTCTGAAGAGCAGAACGCCAGGAGGGCCGCGTTGAAGGGCATGG
CTGACGCCATCAAGGGGTCAACATCTCCGAAGGACTTTCAGGCATTGGCA
CAGGCCCTACATTATGTGGAGAAGATTCTTCTTCCTCATAGGAATGGGTA
TCAGACGGGAAAGGAAAGCGCATCGCTGGTGATGGCCAGTGGACCTTCAT
CAGAGCATGTCAGCAGCGCCGTCAAGGGGGCCAAGAAGAGCTCTGCTCCG
TCTCATCTTGTCGAATATGGCCCACTAGGCAAGGGAGTGATGGCGCTGTG
CATTGGACGCATTGCGTGGGCTGAGGAGAAGAAGTGGCGTCCAAAACTCT
ACGTCTACGGCCAGGCCAAGCCTCCTAATGCATTCTTGGCTCAGCGGCTG
GACGTGAAAGTGCATCCCGGGTTTTGGAAGCATTTTTCAAACGGCATGAA
GCACATGTGGGTGGAGGAGCAGGAGCGCTTCAAGGAGGTCTTTGCCATCG
CCGGCAAAGAAGGCCTGACTGAGCTGATTGACTCATGCATGGAAATTGCC
AAGGTGATAAAAGAAAGCGCCTCTGTAACCCCAAGCAACGTCACCACTGA
TCTCTTCACTGATCTCTTCTCCCGCACTACTCATATGAACAGTGAGACTC
ATGAATCCAAGCCCGCATGA
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