mRNA_C-australica_Contig_99.16.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_99.16.1
Unique NamemRNA_C-australica_Contig_99.16.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 1.080e-63
Identity = 174/534 (32.58%), Postives = 254/534 (47.57%), Query Frame = 1
Query:  163 ATVQVLFTLQGDADDPETGVSSTL-----TAPVPLTLAGLRDIFPYYGTYHFRLRIWDSDG-AEYVWLDLVRENEDLVEIAADLG-VEAGQS----PRELEVKVLPLSFELTPEEEA------QARLAELQMAGEKGGRPAVAEGAGVYQSGAEN-------------------AKAYSSGQHPSYRDHNHXXQRGSST----------------------------SGNPSPHGHDAVDEQEGPSYGDRWRTRL------------GADNKILDDVQAGVKTVLGSKAAQDIRKTGANMVKGVGMGAKMLFKKLNQGGSAARGEYPSPDALESLHIYAALLAKPVGS---EHADLMRELWDGLFPKAKGGYEVA-SPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRAYPWAVVANNVVLMLAQVLSLKTQAFVRDRAVFWEVFAGPEAFYEVFCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLLQTGPSSLEEFMNVALQSGLL 1524
            ++V V + +QGD DDPETGV S+      T P  LTL  LR++FP+ GT+HFRL++ D++G ++Y W+DL  + +D++E+A +LG +E G S     + + +K+LP+ F    E EA      +A  A+   AGE  G  A   G G+   GA                      + +  G H          +RG  +                             G+   HG           YG                   G D++  DD          S+  +D +K  + + K +G GAK ++  +N+G        PS +A+E+LH  A  L  P  +   EH + + ++W  LFP  +  +E A SPRW  AGFQ  + S + R  G+L LK MV+ C  Y  KA S+   Q++    +  YPWAVVANN+ LMLA VL ++   F   R  +W VF    AF+E+FCM FRLLDH W E GA R  FG++IG TK  +  LL++ P +L  FM  A + G+L
Sbjct:    3 SSVLVCYVIQGDDDDPETGVQSSFRVDRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTDGDDILELAENLGGLEGGNSGGHPQQRVHLKILPIDFGGPVEHEAAENAPAEAVPAQDFYAGEGVG-VAHGPGLGLDAPGARGQATADEDLASGVSGMDIGGGERFDVGDHSGSGTRVARERRGERSFDVDXXXXXXXXXXXXXXXXXXXRSPVGGGSRGEHGDGGRXXXXXXXYGXXXXXXXXXXXXXXXXGAYGDDDE--DDTWKASVVNQASQGVKDFQKKTSQVAKTMGFGAKKMWNAINKG--VGGPVVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDDE--FEGAESPRWQEAGFQESNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSAGGSSH--YPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEEMGML 527          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A6H5KWK7_9PHAE (ELMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK7_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.930e-48
Identity = 101/248 (40.73%), Postives = 142/248 (57.26%), Query Frame = 1
Query:  793 SKAAQDIRKTGANMVKGVGMGAKMLFKKLNQGGSAARGEYPSPDALESLHIYAALLAKPVGS---EHADLMRELWDGLFPKAKGGYE-VASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRAYPWAVVANNVVLMLAQVLSLKTQAFVRDRAVFWEVFAGPEAFYEVFCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLLQTGPSSLEEFMNVALQSGLL 1524
            S+  +D +K  + + K +G GAK ++  +N+G        PS +A+E+LH  A  L  P  +   EH + + ++W  LFP  +  +E V SPRW  AGFQ  + S + R  G+L LK MV+ C  Y  KA S+   Q+     +  YPWAVVANN+ LMLA VL ++   F   R  +W VF    AF+E+FCM FRLLDH W E GA R  FG++IG TK  +  LL++ P +L  FM  A + G+L
Sbjct:  118 SQGVKDFQKKTSQVAKTMGFGAKKMWNAINKG--VGGPVVPSEEAMENLHELANFLGTPFSATSREHVNDLGKVWMCLFPDEE--FEGVESPRWQEAGFQEPNVSLDFRGTGVLALKSMVFFCQEYDRKALSLCRAQSVGGSSH--YPWAVVANNLTLMLADVLEMRANQFASSRKGYWGVFDRRGAFFEIFCMAFRLLDHTWAERGAKRSNFGQIIGYTKSVIVELLESNPPNLPAFMGQAEEMGML 359          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A835YT59_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.120e-44
Identity = 166/525 (31.62%), Postives = 231/525 (44.00%), Query Frame = 1
Query:  181 FTLQGDADDPETGVSSTLTAPVP--LTLAGLRDIFPYYGTYHFRLRIWDSDG-AEYVWLDLVRENEDLVEIAADLG-VEAGQ--SPRELEVKVLPLSFELTPEEEAQARLAELQM----AGEKGGRPAVAEGAGVYQSGAENAKAYSSGQHPSYRDHNHXXQRGSSTSGNPSPHGHDAVDEQEG---PSYGDRW------------RTRLGADNKIL---------------------------------------DD--------VQAGVKTVLGSKAAQDIRKTGANMVKGVGMG-AKMLFKKLNQGGSAARGE--YPSPDALESLHIYAALLAKPVGS---EHADLMRELWDGLFPKAK---GGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRAYPWAVVANNVVLMLAQVLSLKTQAFVRDRAVFWEVFAGPEAFYEVFCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLLQTGPSSLEEFMNVALQ 1512
            + LQG+ D PETGV S+L       LTLA L+D+FPY GT+HFRL++ D+ G A +VWLDL +E +D+VE+A +LG +E     S   + VKVLPLSF+  P       L   Q+           PA A  A V     E+A   ++      R+       GSS  G      H +   Q     PS G               R  LG+    +                                       DD        V + + + + S+AAQD+++         G+G A+    K+N+GG+   G    P   AL +L   +  L  P       H +L+  LW  LFP A    G     SPRW  AGFQ      +L   G L L+CMV L SS    A ++L   A+++   R YP+AVVA NV LMLA VL L  + +   RA +W +F   +AF ++FC  FR LD  W E  A+R+ FG+            L +GP ++  F+  A Q
Sbjct:    5 YVLQGEYDAPETGVESSLELQQEQDLTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQEGDDIVELARNLGGIERAPRGSHEVVHVKVLPLSFD-APVLNGSDALPPDQIFDWNEDVSAAAPAAAAAAHVPAYNVEDAFVRAAAARDDAREFAEPPYLGSSGGGASRSTLHASAQGQRHVRRPSGGXXXXXXXAEGGSGHCRRPLGSSEHAVSPFDSPAQRRPSQXXXXXXXXXXXXRRGSGGMEFQQGDHDDSAQTWTASVNSTITSAINSRAAQDLKQAAK-----FGLGNARKFLSKINKGGAGGGGPSTLPPVSALATLDDLSHHLETPFNDGVRSHFELLSRLWGLLFPDAPPLAGNGGAVSPRWREAGFQADSVDGDLDHTGTLCLRCMVTLLSSAD--APALLRANAARAPPRR-YPFAVVARNVTLMLADVLRLGGRGYCEARASYWGLFERADAFEQLFCWAFRRLDAVWAERNASRDAFGQXXXXXXXXXXXALGSGPETVAAFLERAAQ 520          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A7S2RLL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLL0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.800e-32
Identity = 127/478 (26.57%), Postives = 198/478 (41.42%), Query Frame = 1
Query:  148 IEARMATVQVLFTLQGDADDPETGVSSTLTAPVPLTLAGLRDIFPYYGTYHFRLRIWDSDGAEYVWLDLVREN-------EDLVEIAADLGVEAGQSPRELEVKVLPLSFELTPEEEAQARLAELQMA--GEKGGRPAVAEGAGVYQSGAENAKAYSSGQHPSYRDHNHXXQRGSSTSGNPSPHGHDAVDEQEGPSYGDRWRTRLGADNKILDDVQAGVKTVLGSKAAQDIRKTGANMVKGVGM--GAKMLFKKLNQGGSAARGE-YPSPDALESLHIYAALLAKPVGSE---HADLMRELWDGLFPKAKGGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRAYPWAVVANNVVLMLAQVLSLKTQAFVRDRAVFWEVFAGPEA-----FYEVFCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLLQTGPSSLEEFMNVALQSGL 1521
            +   MA   V+      ++   + + S    P PL+LA LR+ FP+ G +HFRL++ D     +VW D+V +        +D V I A   V  G  P     ++ P   E T  +  +   A + M+  G+ G +     G  V +S  +                                          G S                  +Q   + ++ S AA  + +    M K V     + M   K   GG  AR    PSP A + L    +  + P+ +    H   M+ LW   F  A   +   SPRW   GF   D  +++   G+L +  + Y   +Y HKA SM E Q   +D +  YP  VVA N+ +ML  VL L+   F      FW++F  P+      F EVF + FR++D  W +  ATR+ FG ++ +TK  +  LL  GP+SL+E M+ A+++G+
Sbjct:    2 VRGGMAVEAVVVQFDVSSESCSSELVSC-AVPAPLSLASLREAFPFEGVFHFRLQVPDQQSG-HVWEDVVSDEPLASVSGQDSVTIRAVHLVLPGVDPAFSGQELCPYWDEETDRQGRRGFQAPVWMSKLGDMGSKLGELAGQTVRRSEIQGV----------------------------------------GKSVATGTEQLXXXXXXXXXHLQTKFEEMMSSDAAVKLTQGSVKMGKAVSRLWSSGMQAVKSFAGGDEARAPALPSPTAEKCLEFLGSEASTPLDTMNPIHVGSMKRLWLSCF--ADQPFTAVSPRWKTLGFLNDDLGKDVGKSGVLAVHSLAYFADTYQHKAISMFEAQRPNTDNH--YPVGVVAVNLTMMLTDVLGLRQGKFSSSPRTFWQLFERPDPQDMAPFCEVFSLAFRVIDREWADRNATRKDFGPIMASTKQTVVELLDQGPASLDELMDRAIKAGV 433          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A7S1C9A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9A2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.150e-19
Identity = 66/214 (30.84%), Postives = 105/214 (49.07%), Query Frame = 1
Query:  925 ALESLHIYAALLAKPVGSEHADLMRELWDGLF--PKA--KGGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSML-------EGQASKSDQNR-----AYPWAVVANNVVLMLAQVLSLK--TQAFVRDRAV-------FWEVFAGP-EAFYEVFCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLLQTGPSSLE 1488
            AL +LH            +H  L+R LW+ +   P A  +  +   SP W+  GFQR+DP+ + R  G+L L+ +VY  + +G K + +L       EG     D  R      YP+A+V  N+  M A+++ L    QA     A        FW + A   +AF+E++C+ F LLD  W   GA+   F  V+  T+++++ LL T P++ E
Sbjct:   33 ALGALHARLGEAYDQREPDHVGLLRTLWEAIVSPPGAPVQRPFASVSPLWMDRGFQREDPTTDFRGGGVLALENLVYFATHHGDKVRQILATTARDDEGARGVGDDGRPVAPKCYPFAIVGVNLTRMCAELVHLTGGAQAVQFSAAALAAACPSFWRLSASSRDAFHELYCVAFLLLDRRWRTTGASITDFADVLAATRLEVESLLATNPTTTE 246          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A251UQV7_HELAN (Putative ELMO/CED-12 family protein n=5 Tax=Asteroideae TaxID=102804 RepID=A0A251UQV7_HELAN)

HSP 1 Score: 88.6 bits (218), Expect = 5.100e-16
Identity = 60/187 (32.09%), Postives = 103/187 (55.08%), Query Frame = 1
Query:  979 EHADLMRELWDGLFPKAKGGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRA---YPWAVVANNVVLMLAQVLSL---KTQAFVRDRAVFWEVFAGPEAFYEV-FCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDR-LLQTGPSSLEEFMNVALQS 1515
            EH + +R LW   FP+ +   ++ S +W   G+Q +DPS + R  G ++L+ ++Y   ++    Q +L     K +  RA   YP+AV   N+  ML Q+L L   K Q+FV   A F ++ +  E+ +++ +C+ F+L+DH W ++ A+   F  V+ +T+  L+R LLQ   + LEE  +  L S
Sbjct:   86 EHQEALRALWKAAFPEEELR-DIISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFPKSFQDLLR----KQEGVRAMWEYPFAVAGVNITFMLIQMLDLEAVKPQSFVG--ATFLKLLSENESAFDLLYCITFKLMDHQWLDMHASYMDFNAVMKSTRRQLERELLQEDITRLEELPSYNLLS 265          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A5B6ZJZ8_DAVIN (Putative ELMO/CED-12 family protein isoform 1 n=3 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZJZ8_DAVIN)

HSP 1 Score: 88.2 bits (217), Expect = 6.920e-16
Identity = 59/186 (31.72%), Postives = 100/186 (53.76%), Query Frame = 1
Query:  979 EHADLMRELWDGLFPKAKGGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRA---YPWAVVANNVVLMLAQVLSLKTQAFVRDR----AVFWEVFAGPEAFYEV-FCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDR-LLQTGPSSLEEFMNVAL 1509
            EH + +R LW+  FP+ +    + S +W   G+Q +DPS + R  G ++L+ ++Y   SY    Q +L     K + +RA   YP+AV   N+  ML Q+L L+ +   + R    A F +  A  E+ +++ +C+ F+L+DH W  + A+   F  V+  T+  L+R LLQ   + LEE  + +L
Sbjct:   86 EHQEALRSLWNAAFPEEEL-QGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARSYPKSFQDLLR----KQEGDRAMWEYPFAVAGVNITFMLIQMLDLEAE---KPRTMVGATFLKFLAENESAFDLLYCITFKLMDHQWLAMHASYMDFNAVMKATRRQLERELLQEDITQLEELPSYSL 263          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A484LIJ6_9ASTE (ELMO domain-containing protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LIJ6_9ASTE)

HSP 1 Score: 85.1 bits (209), Expect = 1.840e-15
Identity = 55/170 (32.35%), Postives = 91/170 (53.53%), Query Frame = 1
Query:  976 SEHADLMRELWDGLFPKAKGGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRA---YPWAVVANNVVLMLAQVLSL---KTQAFVRDRAVFWEVFAGPEAFYEV-FCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLL 1464
            SEH   +R LWD  FP  +  +++ S +W   G+Q +DPS + R  G ++L+ ++Y   +Y    Q +L     K + NR+   YP+AV   N+  ML Q+L L   K Q  V   A F +  A  E+ +++ +C+ F+L+DH W  + A+   F  V+  T+  L++ L
Sbjct:   10 SEHQAALRALWDSAFP-GEELHDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFSKNYPKSFQDLL----LKREGNRSMWEYPFAVAGVNITFMLIQMLDLEAVKPQRLVG--ATFLKFLADNESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKATRRQLEKEL 172          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A328EBQ4_9ASTE (ELMO domain-containing protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328EBQ4_9ASTE)

HSP 1 Score: 85.5 bits (210), Expect = 4.160e-15
Identity = 53/168 (31.55%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  976 SEHADLMRELWDGLFPKAKGGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRA---YPWAVVANNVVLMLAQVLSLKTQAFVR-DRAVFWEVFAGPEAFYEV-FCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLL 1464
            SEH   +R LWD  FP  +  +++ S +W   G+Q +DPS + R  G ++L+ ++Y   +Y    Q +L     K + NR+   YP+AV   N+  ML Q+L L+    +R   A F +  A  E+ +++ +C+ F+L+DH W  + A+   F  V+  T+  L++ L
Sbjct:   65 SEHQAALRALWDSAFP-GEELHDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFSKNYPKSFQDLL----LKREGNRSMWEYPFAVAGVNITFMLIQMLDLEAVKPLRLVGATFLKFLADNESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKATRRQLEKEL 227          
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Match: A0A2J6KU01_LACSA (ELMO domain-containing protein n=4 Tax=Lactuca TaxID=4235 RepID=A0A2J6KU01_LACSA)

HSP 1 Score: 85.5 bits (210), Expect = 6.100e-15
Identity = 56/185 (30.27%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  979 EHADLMRELWDGLFPKAKGGYEVASPRWLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQNRA---YPWAVVANNVVLMLAQVLSL---KTQAFVRDRAVFWEVFAGPEAFYEV-FCMVFRLLDHNWGELGATREKFGRVIGTTKVDLDR-LLQTGPSSLEEFMNVAL 1509
            EH + ++ LW   FP+ +   ++ S +W   G+Q +DPS + R  G ++L+ ++Y   ++    Q +L     K + +RA   YP+AV   N+  ML Q+L L   K ++FV   A F +  +  E+ +++ +C+ F+L+DH W  + A+   F  V+ +T+  L+R LLQ   + +EE  +  L
Sbjct:   89 EHQEALKALWKAAFPEEELS-DLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNFQKSFQDLLR----KQEGDRAMWEYPFAVAGVNITFMLIQMLDLEAVKPRSFVG--ATFLKFLSENESAFDLLYCITFKLMDHQWLAMHASYMDFNTVMKSTRRQLERELLQDNVNRIEELPSYGL 266          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB26_ECTSI1.080e-6332.58ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWK7_9PHAE1.930e-4840.73ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YT59_9STRA1.120e-4431.62ELMO/CED-12 family-domain-containing protein n=1 T... [more]
A0A7S2RLL0_9STRA1.800e-3226.57Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1C9A2_9STRA5.150e-1930.84Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A251UQV7_HELAN5.100e-1632.09Putative ELMO/CED-12 family protein n=5 Tax=Astero... [more]
A0A5B6ZJZ8_DAVIN6.920e-1631.72Putative ELMO/CED-12 family protein isoform 1 n=3 ... [more]
A0A484LIJ6_9ASTE1.840e-1532.35ELMO domain-containing protein n=2 Tax=Cuscuta cam... [more]
A0A328EBQ4_9ASTE4.160e-1531.55ELMO domain-containing protein n=1 Tax=Cuscuta aus... [more]
A0A2J6KU01_LACSA6.100e-1530.27ELMO domain-containing protein n=4 Tax=Lactuca Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_99contigC-australica_Contig_99:54928..57519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB26
PFAMsELMO_CED12
Model size1536
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons9
Evalue1.61e-64
EggNOG OGsKOG2998@1|root,KOG2998@2759|Eukaryota
DescriptionELMO domain-containing protein
Cds size1371
COG categoryZ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_99.16.1prot_C-australica_Contig_99.16.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_99 55087..57513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588858.0433466-UTR-C-australica_Contig_99:54927..550861682588858.0433466-UTR-C-australica_Contig_99:54927..55086Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 54928..55086 +
1682588858.127454-UTR-C-australica_Contig_99:57513..575191682588858.127454-UTR-C-australica_Contig_99:57513..57519Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 57514..57519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588858.0562618-CDS-C-australica_Contig_99:55086..552711682588858.0562618-CDS-C-australica_Contig_99:55086..55271Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 55087..55271 +
1682588858.0642207-CDS-C-australica_Contig_99:55439..556851682588858.0642207-CDS-C-australica_Contig_99:55439..55685Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 55440..55685 +
1682588858.0720193-CDS-C-australica_Contig_99:55833..559391682588858.0720193-CDS-C-australica_Contig_99:55833..55939Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 55834..55939 +
1682588858.0800695-CDS-C-australica_Contig_99:56011..562001682588858.0800695-CDS-C-australica_Contig_99:56011..56200Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 56012..56200 +
1682588858.0876732-CDS-C-australica_Contig_99:56256..563841682588858.0876732-CDS-C-australica_Contig_99:56256..56384Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 56257..56384 +
1682588858.0953503-CDS-C-australica_Contig_99:56565..567191682588858.0953503-CDS-C-australica_Contig_99:56565..56719Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 56566..56719 +
1682588858.1033077-CDS-C-australica_Contig_99:56788..568871682588858.1033077-CDS-C-australica_Contig_99:56788..56887Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 56789..56887 +
1682588858.1116164-CDS-C-australica_Contig_99:57114..571641682588858.1116164-CDS-C-australica_Contig_99:57114..57164Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 57115..57164 +
1682588858.119568-CDS-C-australica_Contig_99:57299..575131682588858.119568-CDS-C-australica_Contig_99:57299..57513Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 57300..57513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_99.16.1

>prot_C-australica_Contig_99.16.1 ID=prot_C-australica_Contig_99.16.1|Name=mRNA_C-australica_Contig_99.16.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=457bp
MATVQVLFTLQGDADDPETGVSSTLTAPVPLTLAGLRDIFPYYGTYHFRL
RIWDSDGAEYVWLDLVRENEDLVEIAADLGVEAGQSPRELEVKVLPLSFE
LTPEEEAQARLAELQMAGEKGGRPAVAEGAGVYQSGAENAKAYSSGQHPS
YRDHNHNHQRGSSTSGNPSPHGHDAVDEQEGPSYGDRWRTRLGADNKILD
DVQAGVKTVLGSKAAQDIRKTGANMVKGVGMGAKMLFKKLNQGGSAARGE
YPSPDALESLHIYAALLAKPVGSEHADLMRELWDGLFPKAKGGYEVASPR
WLRAGFQRQDPSQELRCWGLLTLKCMVYLCSSYGHKAQSMLEGQASKSDQ
NRAYPWAVVANNVVLMLAQVLSLKTQAFVRDRAVFWEVFAGPEAFYEVFC
MVFRLLDHNWGELGATREKFGRVIGTTKVDLDRLLQTGPSSLEEFMNVAL
QSGLLY*
back to top

mRNA from alignment at C-australica_Contig_99:54928..57519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_99.16.1 ID=mRNA_C-australica_Contig_99.16.1|Name=mRNA_C-australica_Contig_99.16.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2592bp|location=Sequence derived from alignment at C-australica_Contig_99:54928..57519+ (Chrysoparadoxa australica CS_1217)
TAGTATACGGGACAGCTTACCGCTCACTTGTACCCATTTGCCTAGCCACT GGCTCATACTCCCCTGCTCCGGCAATGCATGCCTATGCCACTCTCTGTGT TTAGGCCATCCCCAAGTTGACACCGGGAGGGCAAACCATGAGAGTCTATT GAAGCAAGGATGGCAACTGTTCAGGTGCTCTTTACGTTGCAAGGAGATGC CGATGATCCAGAGACGGGCGTTAGCAGTACCTTGACAGCACCAGTACCCC TCACATTGGCCGGCCTGAGGGACATCTTTCCCTATTATGGCACCTACCAC TTCAGACTCAGGATCTGGGATAGCGACGGGGCTGAGTATGTGTGGTAAGT TATTGAGATGACCCAAGGGGGAGAGAAGTGTACGACCTGGAGGGGTTACC CTCTCTGGCGAATCTCTCTGTTGCTCTCCACCTCCCACTGCCATCCTCCT TGCTTGGGGGCTAACCTGAGGTGGGTGACCCTCACCAGTACCTCCACGAA CACACCCCTCAGGTTAGACTTGGTGCGAGAGAATGAGGACCTGGTGGAGA TAGCGGCCGACCTAGGCGTGGAAGCTGGTCAGAGCCCACGTGAGCTAGAA GTGAAGGTTCTGCCCCTGTCGTTTGAGCTGACACCAGAAGAGGAAGCGCA GGCCAGGCTAGCTGAGCTGCAGATGGCAGGGGAGAAAGGAGGCAGGCCGG CTGTTGCTGAGGGGGCAGGGGTCTATCAGAGTGGGGCAGAGAATGCCAAA GCTTACAGGTGAGCATTTAAGCGCTGTTTCTCTGGAGCTGATTGTCGGAT ACTCAGTTGTGCTACCCGCGCGCTTGTGTTTCAGACCTTCCTGCTCTGTA TATTGTGTCTTAGCCCTTCTGTTCCTGCTCTCACTTCCATGCTCTTGCTA CCTCAGTAGTGGCCAGCACCCCTCCTACAGAGACCACAACCACAACCACC AGCGTGGGTCAAGCACGAGTGGCAACCCGAGTCCCCATGGTCATGATGCT GTGGATGAACAGGTTGGTCGAAACTTGACATGTCAGACACTCCCAAGAGT CCCAAAAGGCCTGTGGCTCACTCCCGCTCATCAGGAGGGCCCCTCCTACG GGGATAGATGGCGGACGAGGCTGGGTGCTGACAACAAGATCCTTGACGAT GTGCAAGCGGGAGTGAAGACTGTGCTGGGGTCCAAGGCCGCGCAGGACAT CAGAAAAACTGGGGCGAACATGGTCAAGGGTGTGGGGATGGGGGCCAAGA TGCTCTTCAAGAAGCTGAATCAGGTGCCGCATCACATCACATCACATCAC ATCAGTTCACCTCACCTCACTTGCCACAGGGGGGCAGTGCAGCACGTGGC GAGTACCCAAGCCCAGACGCTCTAGAGTCACTGCATATCTATGCTGCTCT GCTTGCCAAGCCAGTTGGTTCGGAGCACGCAGACCTCATGCGCGAGCTCT GGGACGGGTCAGTCAGGCACTTCATGCTCATCAGTCATCAGGCCACATTG ACTTGCACTAGCTAGCATGGCCAGGAAAGGGCCCGAAGAAAAGTCTTGAT GGAGCTAACTTCACACAGACGGGCTGGCTCATCTTGCCACACTTTGACGC TGGCTGCTTTTCCCTGCTGGCTTTGCCTTTAATTCCAGGCTGTTTCCCAA AGCCAAAGGGGGCTATGAGGTGGCCTCACCTAGGTGGCTGCGTGCGGGCT TCCAGAGGCAGGACCCTTCACAGGAGCTGAGGTGCTGGGGGCTGCTCACG CTTAAGTGCATGGTGTACCTGTGCAGCTCTTACGGCCACAAGGTAGGATG GATGCGTTTAGTCTCTTCTTTTTCAGCTCTGGCCCTGATGCCAGCACTCC CCGCACCGCAGGCGCAATCCATGCTTGAGGGTCAGGCGAGTAAGAGCGAC CAGAACAGAGCTTACCCATGGGCAGTGGTGGCCAACAATGTGGTGCTCAT GCTAGCACAGGTGCCGCCTCCTCTCCAGGCCCAGCCTCAACCATCCAGCC CTGCCACTTGTGCCGACAAATTGCAGTCAAATCCCCCCCCTCCGCACCTA CTGCAACCAAGTTATTGGTTGAATCTCCCTTGTTGCTCATGCTCACTTTG CAGAGCCGCTTTTTGCCTTTACCTTTAGCTTTCATGGGGATGACTCCCAC AAGCAATTACCTCAGCTGACTGCAGCCACCCCCTCAGGTGTTGAGCCTCA AGACACAAGCGTTTGTCAGGGATAGAGCTGTTTTCTGGTAAGGCAGCTTC CACCGGGATCTTGCTGCGTGTGTGACGGCTTCAACCCTGTCTGCTTCATC AACTTTGTTTCCAGCCGCTTGCTTTATGACGAATTGTATTCACATATGTT TCACCCCTTCCTGCTTTACCAGGGAGGTTTTTGCCGGCCCTGAAGCCTTC TATGAAGTATTTTGCATGGTGTTCCGGCTCCTGGACCACAATTGGGGTGA GCTGGGTGCCACGCGGGAGAAGTTTGGCAGAGTCATTGGTACAACCAAGG TTGACCTAGATAGATTGCTGCAAACTGGACCAAGCTCATTGGAGGAGTTT ATGAATGTCGCCTTACAGAGCGGCTTGTTATATTGAGAAAAC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_99:54928..57519+

>mRNA_C-australica_Contig_99.16.1 ID=mRNA_C-australica_Contig_99.16.1|Name=mRNA_C-australica_Contig_99.16.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1371bp|location=Sequence derived from alignment at C-australica_Contig_99:54928..57519+ (Chrysoparadoxa australica CS_1217)
ATGGCAACTGTTCAGGTGCTCTTTACGTTGCAAGGAGATGCCGATGATCC
AGAGACGGGCGTTAGCAGTACCTTGACAGCACCAGTACCCCTCACATTGG
CCGGCCTGAGGGACATCTTTCCCTATTATGGCACCTACCACTTCAGACTC
AGGATCTGGGATAGCGACGGGGCTGAGTATGTGTGGTTAGACTTGGTGCG
AGAGAATGAGGACCTGGTGGAGATAGCGGCCGACCTAGGCGTGGAAGCTG
GTCAGAGCCCACGTGAGCTAGAAGTGAAGGTTCTGCCCCTGTCGTTTGAG
CTGACACCAGAAGAGGAAGCGCAGGCCAGGCTAGCTGAGCTGCAGATGGC
AGGGGAGAAAGGAGGCAGGCCGGCTGTTGCTGAGGGGGCAGGGGTCTATC
AGAGTGGGGCAGAGAATGCCAAAGCTTACAGTAGTGGCCAGCACCCCTCC
TACAGAGACCACAACCACAACCACCAGCGTGGGTCAAGCACGAGTGGCAA
CCCGAGTCCCCATGGTCATGATGCTGTGGATGAACAGGAGGGCCCCTCCT
ACGGGGATAGATGGCGGACGAGGCTGGGTGCTGACAACAAGATCCTTGAC
GATGTGCAAGCGGGAGTGAAGACTGTGCTGGGGTCCAAGGCCGCGCAGGA
CATCAGAAAAACTGGGGCGAACATGGTCAAGGGTGTGGGGATGGGGGCCA
AGATGCTCTTCAAGAAGCTGAATCAGGGGGGCAGTGCAGCACGTGGCGAG
TACCCAAGCCCAGACGCTCTAGAGTCACTGCATATCTATGCTGCTCTGCT
TGCCAAGCCAGTTGGTTCGGAGCACGCAGACCTCATGCGCGAGCTCTGGG
ACGGGCTGTTTCCCAAAGCCAAAGGGGGCTATGAGGTGGCCTCACCTAGG
TGGCTGCGTGCGGGCTTCCAGAGGCAGGACCCTTCACAGGAGCTGAGGTG
CTGGGGGCTGCTCACGCTTAAGTGCATGGTGTACCTGTGCAGCTCTTACG
GCCACAAGGCGCAATCCATGCTTGAGGGTCAGGCGAGTAAGAGCGACCAG
AACAGAGCTTACCCATGGGCAGTGGTGGCCAACAATGTGGTGCTCATGCT
AGCACAGGTGTTGAGCCTCAAGACACAAGCGTTTGTCAGGGATAGAGCTG
TTTTCTGGGAGGTTTTTGCCGGCCCTGAAGCCTTCTATGAAGTATTTTGC
ATGGTGTTCCGGCTCCTGGACCACAATTGGGGTGAGCTGGGTGCCACGCG
GGAGAAGTTTGGCAGAGTCATTGGTACAACCAAGGTTGACCTAGATAGAT
TGCTGCAAACTGGACCAAGCTCATTGGAGGAGTTTATGAATGTCGCCTTA
CAGAGCGGCTTGTTATATTGA
back to top