mRNA_C-australica_Contig_985.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_985.7.1
Unique NamemRNA_C-australica_Contig_985.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: F0Y8H0_AURAN (MYND-type domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8H0_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.850e-8
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 2
Query:  386 ARLNIDEKAVPVVERCARCNAEAAEKLCSRCKMTRYCSRACQQAAWPSHKKTCIQP 553
            AR  +   A P    C  C A  A   CSRCK   +CSRACQQ+AWP H++TC  P
Sbjct:   14 ARKRVKLDAAP--PSCFHCGAAPATNRCSRCKAVHFCSRACQQSAWPQHRRTCAPP 67          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A6S9EAT3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EAT3_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 8.940e-8
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 2
Query:   95 TESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKA---FEEGGHGIKQLMVMDKDFLIGHLCTSGQPE 358
            T  E+RAH SEE+G+WL + +   GG   VYDVT  L  HPGG   + D  G +A KA   FE+  H      +M K F+IG L  + + E
Sbjct:    8 TWDEIRAHDSEEKGVWLCIGNAKTGGPMMVYDVTKYLNDHPGGGDQLLDVTGDNADKAHQMFEDINHTNDARDIMKK-FVIGKLKMTPEEE 97          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: W2SNI2_NECAM (Putative cytochrome b5 (Fragment) n=1 Tax=Necator americanus TaxID=51031 RepID=W2SNI2_NECAM)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-7
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 2
Query:  182 VYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHLCTSGQPEV-------TPCQGC 379
            VYDV+  L  HPGGA V+ +  GKDAT +FE+ GH  K    M K++LIG +  +  P V       TP  GC
Sbjct:    1 VYDVSKFLNEHPGGAEVIAELAGKDATASFEDVGHS-KDAREMAKEYLIGKVQATSAPTVSSVSEKKTPASGC 72          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A0D1Z9E9_9EURO (Uncharacterized protein n=1 Tax=Cladophialophora immunda TaxID=569365 RepID=A0A0D1Z9E9_9EURO)

HSP 1 Score: 60.5 bits (145), Expect = 2.420e-7
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   80 MDNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHL 337
            M +R +  ++RAH +++  LW+ + +        VY+VTT L  HPGGA ++++CGG DAT+AFE+ GH  +    M+   ++G L
Sbjct:    1 MPSRYSLEDVRAHATDDD-LWVVIHNK-------VYNVTTYLEEHPGGAEILKECGGTDATEAFEDVGHSERAWAAMES-LIVGEL 77          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: UPI0018CE1C7B (cytochrome b5 n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE1C7B)

HSP 1 Score: 55.8 bits (133), Expect = 8.660e-7
Identity = 39/105 (37.14%), Postives = 53/105 (50.48%), Query Frame = 2
Query:  158 PGWGGVK-AVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHLCTSGQPEVTPCQGCLQARLNIDEKAVPVVERCARCNAEAAEKLC 469
            P W  +K +VYDV+ +L  HPGG  ++ DCGGKDATKAF E GH    +  M K + IG +  S   + T     +    NI  K  P  ++ A    E  +  C
Sbjct:   19 PCWIIIKGSVYDVSKMLKDHPGGEDIILDCGGKDATKAFNEVGHSTDAMQDM-KLYKIG-VVVSDNVKTTNSSPVIN---NISTKVEPQQQKSAPAEKEGFKLFC 118          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A7S4V5J3_9DINO (Peptidylprolyl isomerase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V5J3_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-6
Identity = 27/52 (51.92%), Postives = 31/52 (59.62%), Query Frame = 2
Query:  404 EKAVPVVERCARCNAEAAEKLCSRCKMTRYCSRACQQAAWPSHKKTCIQPAQ 559
            E+A P    C  C A     LC+RC+  RYCSR+CQQ AWP HK  C  PAQ
Sbjct:  345 EEASPSAPECGACGARC-PLLCTRCRRVRYCSRSCQQRAWPEHKVHCRAPAQ 395          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A1A0HCV0_9ASCO (Outer mitochondrial membrane cytochrome B5 (Fragment) n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HCV0_9ASCO)

HSP 1 Score: 54.3 bits (129), Expect = 1.280e-6
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 2
Query:   95 TESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHL 337
            T +E++ H S +  LW+ L +        VYD T     HPGGA V+ DCGG DAT+AFE+ GH  K    M   FL+G +
Sbjct:    2 TLAEVKQHGSPDD-LWMILYN-------RVYDFTAFSAQHPGGAEVLFDCGGVDATEAFEDVGHS-KNACEMLAPFLLGRV 73          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A0K0D0W5_ANGCA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0D0W5_ANGCA)

HSP 1 Score: 57.8 bits (138), Expect = 1.540e-6
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 2
Query:   92 ITESELRAHQSEEQGLWLSLSHPGWGGVKA----VYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHLCTSGQPEVTPCQGCL---QARLNI 400
            I  SE+  H +EE   W+ ++  G+  +      VYDVTT L  HPGGA  + +  GKDAT AFE+ GH  K    M +++LIG        + + C  CL   Q R N+
Sbjct:   18 IPMSEVEQHSNEES-CWIIINGKGYPQMYLPLFQVYDVTTFLSEHPGGAEAIMEFAGKDATVAFEDVGHS-KDAGEMTEEYLIG-------AKFSVCSFCLSNLQIRSNL 118          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A7S3V505_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V505_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.600e-6
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   71 SHEMDNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHL 337
            S + +  IT +E+  H ++E   WL + +   GG K VYDVTT L  HPGGA V+ D  G+D+ + FE+ GH       ++K  L+G L
Sbjct:    2 SDKSEKEITMTEVAKHNTQED-CWLVIGNDRTGGPK-VYDVTTYLDDHPGGAEVLLDVSGQDSDEFFEDIGHSKDAREELEK-LLVGVL 87          
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A7S1YP05_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YP05_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.070e-6
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 2
Query:   83 DNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGH 286
            +   T +++  H + E   WL + +   GG K VYDVT+ L  HPGGA V+ D GGKDA + FE+ GH
Sbjct:   40 EKEFTAADVAKHNTAED-CWLIIGNENTGGAK-VYDVTSYLDDHPGGAEVMLDVGGKDADEFFEDIGH 105          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0Y8H0_AURAN1.850e-848.21MYND-type domain-containing protein (Fragment) n=1... [more]
A0A6S9EAT3_HETAK8.940e-841.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W2SNI2_NECAM1.760e-743.84Putative cytochrome b5 (Fragment) n=1 Tax=Necator ... [more]
A0A0D1Z9E9_9EURO2.420e-737.21Uncharacterized protein n=1 Tax=Cladophialophora i... [more]
UPI0018CE1C7B8.660e-737.14cytochrome b5 n=1 Tax=Teleopsis dalmanni TaxID=139... [more]
A0A7S4V5J3_9DINO1.250e-651.92Peptidylprolyl isomerase n=1 Tax=Alexandrium monil... [more]
A0A1A0HCV0_9ASCO1.280e-641.98Outer mitochondrial membrane cytochrome B5 (Fragme... [more]
A0A0K0D0W5_ANGCA1.540e-637.27Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S3V505_9STRA1.600e-639.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1YP05_9STRA3.070e-644.12Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_985contigC-australica_Contig_985:13851..14681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008877691.1
Preferred nameCYB5
PFAMsCyt-b5
Model size592
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006091,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009055,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0022900,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0055114,GO:0071704,GO:0097384,GO:0098827,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
Exons4
Evalue7.81e-09
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota
Descriptionheme binding
Cds size489
COG categoryCI
BiGG ReactioniMM904.YNL111C
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_985.7.1prot_C-australica_Contig_985.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_985 13930..14657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.4638023-UTR-C-australica_Contig_985:13850..139291682588852.4638023-UTR-C-australica_Contig_985:13850..13929Chrysoparadoxa australica CS_1217UTRC-australica_Contig_985 13851..13929 +
1682588852.5127256-UTR-C-australica_Contig_985:14657..146811682588852.5127256-UTR-C-australica_Contig_985:14657..14681Chrysoparadoxa australica CS_1217UTRC-australica_Contig_985 14658..14681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588852.475692-CDS-C-australica_Contig_985:13929..140711682588852.475692-CDS-C-australica_Contig_985:13929..14071Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 13930..14071 +
1682588852.484606-CDS-C-australica_Contig_985:14163..142791682588852.484606-CDS-C-australica_Contig_985:14163..14279Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 14164..14279 +
1682588852.4938145-CDS-C-australica_Contig_985:14344..144881682588852.4938145-CDS-C-australica_Contig_985:14344..14488Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 14345..14488 +
1682588852.5033286-CDS-C-australica_Contig_985:14570..146571682588852.5033286-CDS-C-australica_Contig_985:14570..14657Chrysoparadoxa australica CS_1217CDSC-australica_Contig_985 14571..14657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_985.7.1

>prot_C-australica_Contig_985.7.1 ID=prot_C-australica_Contig_985.7.1|Name=mRNA_C-australica_Contig_985.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=163bp
MDNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAV
VVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHLCTSGQPEVTPCQGC
LQARLNIDEKAVPVVERCARCNAEAAEKLCSRCKMTRYCSRACQQAAWPS
HKKTCIQPAQLF*
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mRNA from alignment at C-australica_Contig_985:13851..14681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_985.7.1 ID=mRNA_C-australica_Contig_985.7.1|Name=mRNA_C-australica_Contig_985.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=831bp|location=Sequence derived from alignment at C-australica_Contig_985:13851..14681+ (Chrysoparadoxa australica CS_1217)
AGGCGATAGGCGTCAGGGATAGGGATAAGGAAGTCGGATAGGGATAAGGA AGTCGGATAGGGTAGGAGATTCACATGAGATGGATAACCGCATCACTGAG TCTGAACTACGGGCCCATCAGAGCGAGGAGCAAGGCCTTTGGCTTTCCCT CAGCCACCCAGGATGGGGTGGTGTGAAGGCTGTGTACGACGTCACCACCC TTCTGCCTTGGCACCCGGGAGGTATGGTCTCCTTCTTCTTTAATCGCTGG TCAATAGCCCGGTCAGCCAGCTCTTGATATTTACCATTGGCGACCTCCCC TCCTCGCTTGCAGGTGCTGTGGTAGTCGAAGACTGCGGGGGAAAGGATGC AACAAAGGCTTTTGAGGAGGGGGGTCATGGCATAAAGCAGCTTATGGTGA TGGATAAGGACTTCTTGATAGGGCATTTGGTCAGTCTGTGCTTGCTATGG AGTCTCCTTTTCACCACCTAAGCAACTCCACCCCCACCCCCCAGTGCACA TCAGGTCAGCCTGAGGTTACCCCATGTCAAGGGTGCCTACAGGCAAGGCT CAATATCGATGAGAAAGCAGTGCCAGTTGTGGAGAGATGCGCGAGATGCA ATGCTGAAGCGGCTGAGAAACTGTGCAGCAGGTGCAAGGTCAGGATGTCT TGCGAATCCCCTATCCCCCCAACACATCTTGTGACCCCGTCCCAACCCTG TAATTTCTGATTTCATCCAGATGACAAGGTATTGCTCACGTGCCTGCCAG CAAGCAGCGTGGCCCTCTCATAAGAAGACATGCATCCAGCCAGCTCAACT TTTTTAGAGGAGGAGGAGGCCAGGTGGGAGG
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Coding sequence (CDS) from alignment at C-australica_Contig_985:13851..14681+

>mRNA_C-australica_Contig_985.7.1 ID=mRNA_C-australica_Contig_985.7.1|Name=mRNA_C-australica_Contig_985.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=489bp|location=Sequence derived from alignment at C-australica_Contig_985:13851..14681+ (Chrysoparadoxa australica CS_1217)
ATGGATAACCGCATCACTGAGTCTGAACTACGGGCCCATCAGAGCGAGGA
GCAAGGCCTTTGGCTTTCCCTCAGCCACCCAGGATGGGGTGGTGTGAAGG
CTGTGTACGACGTCACCACCCTTCTGCCTTGGCACCCGGGAGGTGCTGTG
GTAGTCGAAGACTGCGGGGGAAAGGATGCAACAAAGGCTTTTGAGGAGGG
GGGTCATGGCATAAAGCAGCTTATGGTGATGGATAAGGACTTCTTGATAG
GGCATTTGTGCACATCAGGTCAGCCTGAGGTTACCCCATGTCAAGGGTGC
CTACAGGCAAGGCTCAATATCGATGAGAAAGCAGTGCCAGTTGTGGAGAG
ATGCGCGAGATGCAATGCTGAAGCGGCTGAGAAACTGTGCAGCAGGTGCA
AGATGACAAGGTATTGCTCACGTGCCTGCCAGCAAGCAGCGTGGCCCTCT
CATAAGAAGACATGCATCCAGCCAGCTCAACTTTTTTAG
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