mRNA_C-australica_Contig_970.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_970.4.1
Unique NamemRNA_C-australica_Contig_970.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_970.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_970contigC-australica_Contig_970:5085..7679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1471
Hectar predicted targeting categoryother localisation
Exons11
Cds size1065
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_970.4.1prot_C-australica_Contig_970.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_970 5289..7477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588837.387589-UTR-C-australica_Contig_970:5084..52881682588837.387589-UTR-C-australica_Contig_970:5084..5288Chrysoparadoxa australica CS_1217UTRC-australica_Contig_970 5085..5288 -
1682588837.5203881-UTR-C-australica_Contig_970:7477..76791682588837.5203881-UTR-C-australica_Contig_970:7477..7679Chrysoparadoxa australica CS_1217UTRC-australica_Contig_970 7478..7679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588837.397144-CDS-C-australica_Contig_970:5288..53511682588837.397144-CDS-C-australica_Contig_970:5288..5351Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 5289..5351 -
1682588837.4061565-CDS-C-australica_Contig_970:5478..55931682588837.4061565-CDS-C-australica_Contig_970:5478..5593Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 5479..5593 -
1682588837.415364-CDS-C-australica_Contig_970:5742..59221682588837.415364-CDS-C-australica_Contig_970:5742..5922Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 5743..5922 -
1682588837.4250915-CDS-C-australica_Contig_970:6073..61351682588837.4250915-CDS-C-australica_Contig_970:6073..6135Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 6074..6135 -
1682588837.4345772-CDS-C-australica_Contig_970:6247..63291682588837.4345772-CDS-C-australica_Contig_970:6247..6329Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 6248..6329 -
1682588837.4519224-CDS-C-australica_Contig_970:6490..65861682588837.4519224-CDS-C-australica_Contig_970:6490..6586Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 6491..6586 -
1682588837.465892-CDS-C-australica_Contig_970:6684..67911682588837.465892-CDS-C-australica_Contig_970:6684..6791Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 6685..6791 -
1682588837.4758856-CDS-C-australica_Contig_970:6861..69271682588837.4758856-CDS-C-australica_Contig_970:6861..6927Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 6862..6927 -
1682588837.485673-CDS-C-australica_Contig_970:7034..71661682588837.485673-CDS-C-australica_Contig_970:7034..7166Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 7035..7166 -
1682588837.4964547-CDS-C-australica_Contig_970:7255..73101682588837.4964547-CDS-C-australica_Contig_970:7255..7310Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 7256..7310 -
1682588837.5081768-CDS-C-australica_Contig_970:7370..74771682588837.5081768-CDS-C-australica_Contig_970:7370..7477Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 7371..7477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_970.4.1

>prot_C-australica_Contig_970.4.1 ID=prot_C-australica_Contig_970.4.1|Name=mRNA_C-australica_Contig_970.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=355bp
MTDYMAFPPFPEDLHLYQLMRDVGNASYQAIAMKMRSDGIDEARIASVMA
EQCVVPGRSGPIFASSVGGYRPQNQPSPFPADLQHFQSMRDVGGASDKAI
EMRMRSYGVSEVRIAACFGEAHLPTGASLPEDLPLYETMRKVAGTSFKAM
AMKMRSDNISSEVISQFLVEQAQAHLNCLQAMRDRFPSKNAMQGAVLKVL
SAPLPSFPPGLEKYQQMRDVPTLPTAYDTIIRKMKSDGELDGDDTLVDWL
ASETDGIAAILRKAFGLAPDFPKQLEGYHGLRAGVMASPTNENLKIVGMR
MASEGVDHRTITDCMVEQAQFHLDALRAVYPGVKATYVNAATVQKQSVLV
HTSE*
back to top

mRNA from alignment at C-australica_Contig_970:5085..7679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_970.4.1 ID=mRNA_C-australica_Contig_970.4.1|Name=mRNA_C-australica_Contig_970.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2595bp|location=Sequence derived from alignment at C-australica_Contig_970:5085..7679- (Chrysoparadoxa australica CS_1217)
TGTCTCGATTTGACCCTTTGTGTCGCTTGAGATATTAGGGCACTCCACTT
CTTTACTCCCTCCTTACTCCTGGCTATATGCCCCTCCCCACTCTTTCGAC
GCTCGGCCTCTGCCTTTTGACGAAATTGAACCGCTGGGACCCTGGTCCAG
CCTTCTGCTGACCCTTAGACTCACACCTCCCCCCCTTCAGCAGCCTGCAA
CTATGACGGACTACATGGCATTCCCTCCTTTCCCTGAAGACCTCCACCTC
TACCAACTAATGAGAGACGTGGGAAATGCATCCTATCAGGCAATCGCTAT
GAAAATGAGGTACAGCAGCTTGTGCCTCGATCAACTTCCATCTTGTCTTA
TAACTGCTCGTGTCTCCAGGTCTGATGGTATCGATGAAGCCAGGATTGCA
TCTGTGATGGCTGAGCAGTGTGTGGTAAGTAATAACAGTACCCTGGGCCT
TCAATCACTGCATCACTGCACGCTTCCCTTCCCCTCACGTATCTCTTGTC
TTGTAATTTTTAGGTTCCAGGCAGGAGCGGCCCTATCTTTGCCTCATCAG
TTGGTGGTTACCGCCCCCAGAACCAACCATCTCCCTTCCCAGCTGATCTG
CAACACTTCCAGAGCATGAGGGACGTTGGTGGTGCTTCCGACAAGGTACA
ACGCACTCTTTGACCTCAAGGCTCGAGACCAAAACTTGCTTAGCTTAGCT
TTTCCATGCTAACATATCTATTTTTCAATGCATCCAACCAACGTAACATT
AGGCAATTGAGATGAGGATGAGGTCTTATGGTGTCAGTGAAGTGCGCATT
GCTGCCTGCTTTGGAGAGGTAAAGTAGAAAAAGAAAAGACTAAGTTAAGT
TTAGTTTATCCTAATTTCTAATGCCTCTATAACCCTAGGCTCATCTCCCT
ACTGGTGCATCTCTACCTGAAGACCTGCCCCTATATGAAACAATGCGTAA
AGTGGCTGGTACCTCCTTCAAAGCCATGGCCATGAAGATGCGAAGGTATA
TGAGCATATGAGCAGCAGTTATTGCTGGCTTGTAATCATTCTCAGATTTT
GTTCCCCATTCTTTCTCCCTAACTTTCTCTCTTCTTTCTATAGTGATAAC
ATATCAAGCGAAGTCATCTCCCAGTTCCTGGTAGAGCAGGCACAAGCCCA
CCTTAACTGCCTTCAAGCAATGCGCGACAGGTTCCCTAGGTACACGATTC
ATAGTGATTCATTTTATTCATTAGCTCATACATCATTCATTTATTCATCA
CGCTAGCACTTGGACCTTTAGACAGCCTCAAACGAGCGTCCGTAGAGTGC
AGTATGCATGCTACATGCTAACTTTTGGTTGCTTCTCACCTTTCCAACAG
CAAGAATGCCATGCAGGGTGCAGTGCTTAAGGTGCTGTCAGCGCCACTAC
CCTCCTTTCCTCCTGGACTAGAGAAGTATCAGGTATGGCACTGGCACCAA
TGTAACCTACCTAACTAACCCATTAATATGCCTAACCTTGAACCACAATG
GAAAGCAACTTTCAAATTGCCTGACATGACTTGCTGCTCTACAGCAAATG
AGGGATGTCCCTACACTTCCCACTGCCTACGACACCATCATTCGCAAGAT
GAAGAGGTAAGTTAACTATGTCTCCAATCTGAAAATCTCACAAGCAGCCA
TAGAGAAGTATCGTTGAGATTCCTTCAAGTTTGCAGTGCTGCTCTTCACT
TGGTCGTTGTTGATGCAACCCCCTCCTCACCCTCCTCACCCCCCTTTTTT
GTGACAGTGATGGCGAGCTGGATGGTGATGATACCCTAGTAGACTGGTTG
GCTTCTGAAACTGACGGGATTGCTGCTATATTGCGTAAGGCTTTTGGTTT
GGCACCTGATTTCCCAAAGCAACTTGAAGGCTATCATGGCCTGAGGGCAG
GTGTTATGGCCAGCCCCACCAATGAGAACCTGAAAATGTGAGTGAAAAGA
GAAACCAACCCATGATGATTGCTCTGACACGCCTAACCCTAACTATGTAT
CTATCCGCTAGCATAGGCATAGTTAGTGGCAGCTATATCCTCATCCTATT
CTTCTCACTTTTCTCTTCCTCATTCCTTATGCTTAGTGTTGGCATGAGGA
TGGCTTCTGAGGGAGTGGATCATAGGACCATTACTGATTGCATGGTGGAG
CAAGCACAGTTTCATCTGGATGCACTCCGCGCAGTGTACCCAGGTGTCAA
GGTATGATGCTAATGCTTGATGAGAGAGAGTGAGAGAGTAGAGCCTGAGT
TACTCTTATCTCATTCCTGTCCTCACCAACCATACCCATTCAGCTCAAAT
TTGTCTTTTACCGCTTATCATTTTCCAGGCTACTTATGTGAATGCCGCGA
CTGTCCAAAAGCAGAGCGTGCTTGTACACACCTCTGAATGAGCTTAAGGC
AGAGAGCATCTCGACCCTGCATCATCATGCATGTCTTTGGTCAAAAGGAG
ATGCGCAGGAGGGACTTCCTTACCTGCCCTAACTGACCCAACCCTGACTC
ACATAAGAAAGGGAAAGCTTGTGGAACAGTGTGGCGAAGCATGTGCAAGT
CAACCATCTCCATGGGTATAACCCTAAATAACCAGGCCCTATTAT
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_970:5085..7679-

>mRNA_C-australica_Contig_970.4.1 ID=mRNA_C-australica_Contig_970.4.1|Name=mRNA_C-australica_Contig_970.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1065bp|location=Sequence derived from alignment at C-australica_Contig_970:5085..7679- (Chrysoparadoxa australica CS_1217)
ATGACGGACTACATGGCATTCCCTCCTTTCCCTGAAGACCTCCACCTCTA
CCAACTAATGAGAGACGTGGGAAATGCATCCTATCAGGCAATCGCTATGA
AAATGAGGTCTGATGGTATCGATGAAGCCAGGATTGCATCTGTGATGGCT
GAGCAGTGTGTGGTTCCAGGCAGGAGCGGCCCTATCTTTGCCTCATCAGT
TGGTGGTTACCGCCCCCAGAACCAACCATCTCCCTTCCCAGCTGATCTGC
AACACTTCCAGAGCATGAGGGACGTTGGTGGTGCTTCCGACAAGGCAATT
GAGATGAGGATGAGGTCTTATGGTGTCAGTGAAGTGCGCATTGCTGCCTG
CTTTGGAGAGGCTCATCTCCCTACTGGTGCATCTCTACCTGAAGACCTGC
CCCTATATGAAACAATGCGTAAAGTGGCTGGTACCTCCTTCAAAGCCATG
GCCATGAAGATGCGAAGTGATAACATATCAAGCGAAGTCATCTCCCAGTT
CCTGGTAGAGCAGGCACAAGCCCACCTTAACTGCCTTCAAGCAATGCGCG
ACAGGTTCCCTAGCAAGAATGCCATGCAGGGTGCAGTGCTTAAGGTGCTG
TCAGCGCCACTACCCTCCTTTCCTCCTGGACTAGAGAAGTATCAGCAAAT
GAGGGATGTCCCTACACTTCCCACTGCCTACGACACCATCATTCGCAAGA
TGAAGAGTGATGGCGAGCTGGATGGTGATGATACCCTAGTAGACTGGTTG
GCTTCTGAAACTGACGGGATTGCTGCTATATTGCGTAAGGCTTTTGGTTT
GGCACCTGATTTCCCAAAGCAACTTGAAGGCTATCATGGCCTGAGGGCAG
GTGTTATGGCCAGCCCCACCAATGAGAACCTGAAAATTGTTGGCATGAGG
ATGGCTTCTGAGGGAGTGGATCATAGGACCATTACTGATTGCATGGTGGA
GCAAGCACAGTTTCATCTGGATGCACTCCGCGCAGTGTACCCAGGTGTCA
AGGCTACTTATGTGAATGCCGCGACTGTCCAAAAGCAGAGCGTGCTTGTA
CACACCTCTGAATGA
back to top