mRNA_C-australica_Contig_1016.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1016.6.1
Unique NamemRNA_C-australica_Contig_1016.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1016.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1016contigC-australica_Contig_1016:13224..13539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586750.7014458-CDS-C-australica_Contig_1016:13223..133851682586750.7014458-CDS-C-australica_Contig_1016:13223..13385Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 13224..13385 -
1682586750.7181895-CDS-C-australica_Contig_1016:13448..135081682586750.7181895-CDS-C-australica_Contig_1016:13448..13508Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 13449..13508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586750.728427-UTR-C-australica_Contig_1016:13508..135391682586750.728427-UTR-C-australica_Contig_1016:13508..13539Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1016 13509..13539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1016.6.1prot_C-australica_Contig_1016.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1016 13224..13508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1016.6.1

>prot_C-australica_Contig_1016.6.1 ID=prot_C-australica_Contig_1016.6.1|Name=mRNA_C-australica_Contig_1016.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=74bp
MDAEGGEGANVSIPHPTVDEVPQAKTLPSLLLELSAVHEELDAQLHGVTQ
AADGRLHALMSSAGSASLSQEDII
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mRNA from alignment at C-australica_Contig_1016:13224..13539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1016.6.1 ID=mRNA_C-australica_Contig_1016.6.1|Name=mRNA_C-australica_Contig_1016.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=316bp|location=Sequence derived from alignment at C-australica_Contig_1016:13224..13539- (Chrysoparadoxa australica CS_1217)
CCTCGGGGTTGCGTGGGTTATTGGGGCCATAATGGACGCAGAGGGTGGGG
AGGGCGCTAATGTATCGATCCCGCATCCAACCGTAGACGAGGTCAGGCAG
CCAACAGTGACTTGCCTACCTCCCCTCCTTGACCGTTGCTTATGTCAACG
TTAGGTACCTCAAGCCAAGACATTGCCATCCCTTCTGCTCGAGCTCTCTG
CAGTGCACGAAGAGCTCGATGCCCAGCTCCATGGGGTGACTCAGGCAGCT
GATGGAAGGCTGCATGCGCTCATGAGCAGCGCTGGGAGCGCTTCTCTGTC
ACAGGAGGATATCATA
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Coding sequence (CDS) from alignment at C-australica_Contig_1016:13224..13539-

>mRNA_C-australica_Contig_1016.6.1 ID=mRNA_C-australica_Contig_1016.6.1|Name=mRNA_C-australica_Contig_1016.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=222bp|location=Sequence derived from alignment at C-australica_Contig_1016:13224..13539- (Chrysoparadoxa australica CS_1217)
ATGGACGCAGAGGGTGGGGAGGGCGCTAATGTATCGATCCCGCATCCAAC
CGTAGACGAGGTACCTCAAGCCAAGACATTGCCATCCCTTCTGCTCGAGC
TCTCTGCAGTGCACGAAGAGCTCGATGCCCAGCTCCATGGGGTGACTCAG
GCAGCTGATGGAAGGCTGCATGCGCTCATGAGCAGCGCTGGGAGCGCTTC
TCTGTCACAGGAGGATATCATA
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