mRNA_C-australica_Contig_1016.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1016.4.1
Unique NamemRNA_C-australica_Contig_1016.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1016.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1016contigC-australica_Contig_1016:10080..12171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size826
Hectar predicted targeting categoryother localisation
Exons10
Cds size822
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1016.4.1prot_C-australica_Contig_1016.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1016 10082..12171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586750.5143313-CDS-C-australica_Contig_1016:10081..101801682586750.5143313-CDS-C-australica_Contig_1016:10081..10180Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 10082..10180 -
1682586750.5243764-CDS-C-australica_Contig_1016:10243..103151682586750.5243764-CDS-C-australica_Contig_1016:10243..10315Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 10244..10315 -
1682586750.5342596-CDS-C-australica_Contig_1016:10525..106691682586750.5342596-CDS-C-australica_Contig_1016:10525..10669Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 10526..10669 -
1682586750.5437813-CDS-C-australica_Contig_1016:10775..108341682586750.5437813-CDS-C-australica_Contig_1016:10775..10834Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 10776..10834 -
1682586750.5531826-CDS-C-australica_Contig_1016:10948..110141682586750.5531826-CDS-C-australica_Contig_1016:10948..11014Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 10949..11014 -
1682586750.562644-CDS-C-australica_Contig_1016:11190..113281682586750.562644-CDS-C-australica_Contig_1016:11190..11328Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 11191..11328 -
1682586750.572412-CDS-C-australica_Contig_1016:11451..115301682586750.572412-CDS-C-australica_Contig_1016:11451..11530Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 11452..11530 -
1682586750.5822206-CDS-C-australica_Contig_1016:11714..117941682586750.5822206-CDS-C-australica_Contig_1016:11714..11794Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 11715..11794 -
1682586750.5923681-CDS-C-australica_Contig_1016:11982..120231682586750.5923681-CDS-C-australica_Contig_1016:11982..12023Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 11983..12023 -
1682586750.602069-CDS-C-australica_Contig_1016:12127..121711682586750.602069-CDS-C-australica_Contig_1016:12127..12171Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1016 12128..12171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1016.4.1

>prot_C-australica_Contig_1016.4.1 ID=prot_C-australica_Contig_1016.4.1|Name=mRNA_C-australica_Contig_1016.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=274bp
GHIDVNPNVETPVARHFRKRRGSDAAAGDSRDGSPEDRKSASRRLGDPAV
LKPTKGRKAALDDGEAPRLQGFDYLMKKMSSGTIPIPGASTPLATGGDVS
GELSALQLDVGADASVDTCGSSDEGDEGVEVNQNSDDGTGERIASDEDVE
GSKFGTRSLFASFGLCSSEGSYVDLRQSTDSVGSRKLSFGSLGPFGCGQG
KENSLNEAAVREQHAGQEEANASGSRQPLTSSQEWHQRRREVSGAGVVTI
STNTHISARESWSLGMEALAAGGG
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mRNA from alignment at C-australica_Contig_1016:10080..12171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1016.4.1 ID=mRNA_C-australica_Contig_1016.4.1|Name=mRNA_C-australica_Contig_1016.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2092bp|location=Sequence derived from alignment at C-australica_Contig_1016:10080..12171- (Chrysoparadoxa australica CS_1217)
GGACACATCGACGTTAATCCTAACGTTGAAACACCCGTGGCTAGGTGCAA
GCTCAAACAAACAAATCCATGAATTACTAGTGAATTGCTAGCTGGCCAGC
TTGCTCTTACATGACTGTTTCCTTCACCGCAACCTCAAACCCTCCCAGGC
ACTTCCGGAAGAGAAGAGGCTCAGATGCTGCTGCAGGCGGTCAGTGACAC
TCGCACCCCAACTAAACAGCAGCCAGCACAAGCACCAGCTGCACTTAAGT
CACCATCTGTTTCGCTCGAGCTGCACCTACCGCTGCCTCAGCTTGCTTGT
CTCTTCTTTCCTGTTCTGTTCCGTTCTGTTCTAAGCCCAGCTCTTTCCCA
TCCATCATATTGATCATATTGCCCCAGACTCAAGGGATGGATCACCTGAG
GACAGAAAGAGTGCATCAAGACGACTAGGGGACCCGGCAGTACTGAAACC
CACCAAGGTAAAAGACAAAGGGGGCAACACAAATGTTATGGGTGACTAAA
AATGAGTGAAACTTTAAATTTATATCCAGCTCATTGATATTATGGGCTCT
TTAGTGGGTGAGTGGGGCGAATGGCGTGATGCGAGATGAGGAAAGGAGAG
ACGCAGTCAAGTGAACTCTTTCCTCCACTCATTCTCATTAGGGTAGGAAA
GCTGCTCTGGATGATGGTGAGGCGCCGCGGTTGCAGGGCTTTGATTACTT
AATGAAGAAGATGAGCAGTGGTAAGTCAATTTGTTTGCCCTGTGTGCCCT
ATAACCAATAGTTACCATACTGATACTGCTTGGCATTGCTTGACCATGGC
AATCGCCAGCAACAAATCACCATTGACACTGGTCCCAATGCAGGTACCAT
TCCGATTCCAGGAGCGAGTACCCCTTTAGCTACTGGTGGTGACGTCTCTG
GAGAGCTCAGTGCCTTACAGCTCGATGTGGGAGCCGATGCATCCGTGGAT
ACATGTGGCTCCTCAGATGAGGGTGATGAGGGTATGATTATGATTGTCTC
TGTATTGTAGCTCAGTGTAACTGGTAGTGGTAATGCCAGTTGGCTGCCAG
GCCTGTTCTGGATTTTCTTCTCTTTCTGGGAATGTTAGTGCAGCAAAGTT
CATGACCTGGCCTCACCTGACTGTTGATGTGCTGTAATCAACATTCATGG
TTGCTAGGGGTGGAAGTGAACCAGAACAGTGATGATGGCACTGGGGAGCG
CATTGCAAGTGATGAGGATGTTGGTAAGGCCAACAACAAAACAAGCCCGT
CCCTTCCCTTGGCTCGGCCTCATCAAAGCCTTAGCAACCCCGACCCCAAC
CCTGTCCGCCACCATCATGATTGCATTGATACCACAGAGGGTAGCAAGTT
TGGGACAAGGTCACTGTTTGCCAGTTTTGGCTTGTGCAGCTCTGAGGTAA
TGCCCTTCACCTCCTCTCGCAGTCCTTTCCACTTTGGCCATCCTGTTTCC
GCCGTTGGTAAATATGTTGCTTGACTTCTGGGTGCTGGTGCTATGCTCAC
AGGGAAGCTATGTCGACTTGAGGCAATCAACTGACTCGGTTGGTTCCAGA
AAGCTCTCGTTTGGGTCACTTGGGCCGTTTGGATGTGGCCAGGGGAAAGA
AAACTCTTTAAATGAGGCAGCTGTGCGGGAGCAACATGCTGGACAGGTAA
GAAATATGAGTACCAACACTGAGTAGAAAACCAGGCTGGTTGGTCGTTTG
CCGTATAAGCCAGTCAATACCTGTCTGGCTTATAGTCTTGGTATGAGAAA
CTGGTTAGATTTGTTAGGTGTCATCTTGTAGTAAGACAGACAGACGCCTC
ATGTCAGCTCACCAAACTGGTTACTGACAGCACTATGCCTGGTCTCTTTA
CCTCAGGAGGAAGCAAACGCCAGTGGGTCAAGGCAGCCACTCACTAGCTC
GCAGGAATGGCACCAAAGGCGAAGGGAGGTGAGCAATCAGCTTGCCTTTG
CTCCCACTCATCCCTGCTAGCTCCCACTCATCTCTGAGCAGGTCTCAGGT
GCTGGAGTAGTGACCATCTCCACCAACACACACATCAGTGCTCGGGAATC
ATGGTCCCTGGGTATGGAGGCCCTGGCGGCTGGGGGAGGCTC
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Coding sequence (CDS) from alignment at C-australica_Contig_1016:10080..12171-

>mRNA_C-australica_Contig_1016.4.1 ID=mRNA_C-australica_Contig_1016.4.1|Name=mRNA_C-australica_Contig_1016.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=822bp|location=Sequence derived from alignment at C-australica_Contig_1016:10080..12171- (Chrysoparadoxa australica CS_1217)
GGACACATCGACGTTAATCCTAACGTTGAAACACCCGTGGCTAGGCACTT
CCGGAAGAGAAGAGGCTCAGATGCTGCTGCAGGCGACTCAAGGGATGGAT
CACCTGAGGACAGAAAGAGTGCATCAAGACGACTAGGGGACCCGGCAGTA
CTGAAACCCACCAAGGGTAGGAAAGCTGCTCTGGATGATGGTGAGGCGCC
GCGGTTGCAGGGCTTTGATTACTTAATGAAGAAGATGAGCAGTGGTACCA
TTCCGATTCCAGGAGCGAGTACCCCTTTAGCTACTGGTGGTGACGTCTCT
GGAGAGCTCAGTGCCTTACAGCTCGATGTGGGAGCCGATGCATCCGTGGA
TACATGTGGCTCCTCAGATGAGGGTGATGAGGGGGTGGAAGTGAACCAGA
ACAGTGATGATGGCACTGGGGAGCGCATTGCAAGTGATGAGGATGTTGAG
GGTAGCAAGTTTGGGACAAGGTCACTGTTTGCCAGTTTTGGCTTGTGCAG
CTCTGAGGGAAGCTATGTCGACTTGAGGCAATCAACTGACTCGGTTGGTT
CCAGAAAGCTCTCGTTTGGGTCACTTGGGCCGTTTGGATGTGGCCAGGGG
AAAGAAAACTCTTTAAATGAGGCAGCTGTGCGGGAGCAACATGCTGGACA
GGAGGAAGCAAACGCCAGTGGGTCAAGGCAGCCACTCACTAGCTCGCAGG
AATGGCACCAAAGGCGAAGGGAGGTCTCAGGTGCTGGAGTAGTGACCATC
TCCACCAACACACACATCAGTGCTCGGGAATCATGGTCCCTGGGTATGGA
GGCCCTGGCGGCTGGGGGAGGC
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