mRNA_C-australica_Contig_1014.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1014.3.1
Unique NamemRNA_C-australica_Contig_1014.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A6H5J951_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J951_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.700e-24
Identity = 89/262 (33.97%), Postives = 133/262 (50.76%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHTGEGAPE---------NDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAG--AGVYRPPRMTAVPYDDE---KNTEKKEKIATRKKERLRRSEILDTLREDFSERPE--RVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPE-----ESGPKKGKGSARNVGG--------ALGAAVGAVGQTM 701
            LRP+D KLKY+TDKLLR+A +  G+ +         +DPLS+RP P  +   GE+                 +S S G GG     G+YR PR+ ++PYD++       + EK   R++++LRR E+++TLRE+F E+PE  R V + G +   E   +K+            DHM+R+ ++RK KK R R+ +DA  +  IADVG+  + +R   +A       E G     G               ALG A+GAVG +M
Sbjct:  214 LRPMDRKLKYQTDKLLRVAASAGGSADGEVGGSGGDDDPLSFRPRPEGMAPWGEDPSTAAEDSGIDAER---SSSSAGRGGEADQEGLYRAPRLASMPYDEDGLSTGAARGEKRLERRRDKLRRGEVMETLREEFGEQPETVRAVGNAGASGVSEAKMKKLLEEDKERLDFEEDHMVRLTVTRKAKKARARMEKDAGRLETIADVGSAADFIRVAKNADGFGADMEGGDDDAFGXXXXXXXXXXXXXXXALGRAMGAVGGSM 472          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A8D0B410_9SAUR (Neuroguidin n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0B410_9SAUR)

HSP 1 Score: 96.7 bits (239), Expect = 5.650e-18
Identity = 73/213 (34.27%), Postives = 104/213 (48.83%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDI---GTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKK 632
            +RP+D KLKY+ DKL++ A TG    ENDPL ++PNPG L+    E                    SKG    G   Y PPR+  V Y DE   E+++KI  + K+R   S I+  L+E +S+ PE V +      T   +ED  R                M+R+  SRK+K  RRR+    S +S++   G++  L   T  A E+SGP+K
Sbjct:  112 MRPIDQKLKYQVDKLVKAAITGAPG-ENDPLRFKPNPGNLMSKLNESEESEDEEPADRKKAAGRDASKG----GGRKYVPPRLVPV-YYDETEAEREKKILEQAKKRALSSSIIRELKEQYSDAPEEVREGRYAHATRQSREDEHRTSYEESM---------MVRLNFSRKEKARRRRVGALTSQLSSLTHFGDISALTGATALAEEDSGPQK 309          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A835ZC79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC79_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.660e-17
Identity = 114/285 (40.00%), Postives = 143/285 (50.18%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHTGEGAPEN-----------------DPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASL--------SKGPGGAG----------AGVYRPPRMTAVPYDDEK---NTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESG-------PKKGKGSARNVGGALGAAVGAVGQTMRKKKTRR 722
            LRPLD +LKY+ DKL R A                          DPLS+RPNP ALV     XXXXXXXXXXXXXXXX   L        ++G  G            +G YR PRM AVPY+++       + E+   R+++R R  EIL+TLRE+F +RPE V    G+ M  + A+RK+    XXXXXXXX                            IADVGNVG+ MR  DD  EE G       PK G  S R VGGALG AVG++G+  +K+++ R
Sbjct:  113 LRPLDARLKYQLDKLFRAAAAPXXXXXXXXXXXXXXXXXXXXXXADPLSFRPNPDALVAKDGGXXXXXXXXXXXXXXXXEPRLGGYRAKAAARGRRGGXXXXXXXXXXDSGAYRAPRMAAVPYEEDGAAGTRRRDERRVERRRDRARTGEILETLREEFGDRPEVVRGGGGSGMVNDQARRKLDREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTIADVGNVGDFMRLGDD--EEGGVGVRGRGPKSG--SKRAVGGALGMAVGSLGRKHKKQRSSR 393          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A7S2R5P9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5P9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.050e-16
Identity = 88/233 (37.77%), Postives = 133/233 (57.08%), Query Frame = 3
Query:    6 RPLDHKLKYETDKLLRLAHT-------GEGAPE--------NDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXX--------------ASLSKGP--------GGAGAGVYRPPRMTAVPY-DDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIG---TNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRIT-QDASMMSNIADVGNV 578
            RP++ K++Y+ DKLL L+ T       G G  +        NDPLS+RPNP  ++  GE+ XXXXXXXXXXXXXXXX              A+LS+G           +  G+Y+ PR+ +VP+  +EK  +KKE+I  ++KER+R+SE L T++  F E+PE   DD+G   T   + +A R++            +  +R+  SRK+KK R RI  ++AS ++ I+D+GN+
Sbjct:   68 RPMEKKMRYQLDKLLSLSSTSSTFASAGAGGDDATLSVNNNNDPLSFRPNPEKMITKGEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXAAKAALSEGKKKNKKDVDNHSKVGIYKAPRLASVPFATEEKEEQKKERILKKQKERMRKSEFLQTIQSQFGEKPEE--DDMGGGATIGKQREAARRLTERDAEKTRYEEESFVRLATSRKEKKARNRIMREEASNLNAISDIGNI 298          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A670K2T8_PODMU (Neuroguidin n=3 Tax=Lacertinae TaxID=162266 RepID=A0A670K2T8_PODMU)

HSP 1 Score: 90.1 bits (222), Expect = 8.900e-16
Identity = 67/215 (31.16%), Postives = 107/215 (49.77%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDI---GTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKKGK 638
            +RP+D KLKY+ DKL++ A TG    ENDPL ++PNPG L+   ++                    SKG    G+  Y PPR+  V YD E   E+++K+  + K+R   S I+  L+E +S+ PE V +      +   +ED  R                M+R+ ++RK+K  RRR+    S +S++   G++  L      + E+SGP++ K
Sbjct:  112 MRPIDQKLKYQVDKLVKAAVTG-ALGENDPLRFKPNPGNLMSKLDDSEESEDEEAAGGAKNSGKGASKG----GSRKYVPPRLVPVHYD-ETEAEREKKLLEQAKKRALSSSIIRELKEQYSDAPEEVREGRYAHASRQSREDEHRT---------NYEESMMVRLNVTRKEKARRRRVGDLGSQLSSLTHFGDITALTGAAAPSGEDSGPQRKK 311          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A067CYY5_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYY5_SAPPC)

HSP 1 Score: 89.4 bits (220), Expect = 1.920e-15
Identity = 72/230 (31.30%), Postives = 110/230 (47.83%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDE-KNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKKGKGSARNVGGALGAAVGAV 689
            +RPLD KLKY+ DKLL++A   + +  ++ LSY PNP AL     +                    SK       GVYR PRM +VPYD+E K  +KK K   R ++RL +S IL  +RE++SERP+ ++    + + KE A    +           +  +R+  SRK K  +R+  +DA    +I  + N   +     D  +  G  KG+  A   G  +G  +G +
Sbjct:   85 MRPLDRKLKYQVDKLLKIA-VSDVSQLDEALSYAPNPDALKA---DDDADSDAGENDDEDSYEGKKSKD------GVYRAPRMASVPYDEEEKEADKKAKRDERNRKRLAKSTILSEVREEYSERPQEILTSGSSALDKELANEAREKTDYEE-----ERFVRLVTSRKDKIRKRQRERDAMAADSIGKIDNFAGIHEALGDVVK--GQNKGRYVAPAQGKKIGGKIGGI 297          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A4D9DG17_9STRA (Sas10 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG17_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.250e-15
Identity = 66/202 (32.67%), Postives = 97/202 (48.02%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHT-GEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGV-YRPPRMTAVPYDDEKNTE-----KKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGEL 587
            +RPLD KLKY  D+L ++A   G     +DPLS+RPNP  LVG                       L    G     V YRPPR+ AVPY ++   +     KKE +A ++ E+LRRSE+L TL E + ++PE V +       +   +++             +   R+  SR+ KK RR   + A+ +  IAD+G+  EL
Sbjct:  325 MRPLDAKLKYHLDRLTKVASVDGSSRIHDDPLSFRPNPDLLVG---------KRGQDRVEDGNGKDLDNTEGNGHREVLYRPPRLAAVPYGEKTGVDGGRESKKEALARKRLEKLRRSELLQTLTEQYRDKPELVAEH---KSLENSVQQRADDAEEERRVFEEERFTRLVTSRRDKKARRLANEQATRLETIADIGDFHEL 514          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A5D6XJV1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJV1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.070e-14
Identity = 67/193 (34.72%), Postives = 100/193 (51.81%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGA-GVYRPPRMTAVPYDDE-KNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGN 575
            +RPLD KLKY+ DK+L++A +G G   ++ L+Y PNP  LVG   +                    S  PG A   G+YR PR+ +VPYD+E K   KK K   R ++R+++S IL  LRE+FSERP  +     + + KE A+ + +              +R+  SRK K  +R+  Q+A+   N+  V N
Sbjct:   89 VRPLDRKLKYQIDKMLKVAVSG-GKDMDESLNYAPNPDQLVGQDGQADSDDD--------------SGRPGAASKDGIYRAPRLASVPYDEEEKEAAKKAKREERNRKRMQKSTILSELREEFSERPTEIFAGGSSAVDKELAREEAEKKDYEE-----SRFVRLVTSRKDKIRKRQREQEANRADNVGSVDN 261          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: A0A3M6VTM7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTM7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.480e-14
Identity = 75/249 (30.12%), Postives = 116/249 (46.59%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHT-GEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKE-KIATRKKERLRRSEILDTLREDFSERPERVVDD----IGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELM------RWTDDAPEESGPKKGKGSARNVGGALGAAVGAVGQTMRKKK 713
            +RPLD K+KY+ DK+L++A + G+G  E+  LSY PNPG L   G                       +G  GA  G+YR PR+ AVPY++E+  + K+ K   R ++RL++S IL  LRE+FSERP  ++      +   + +E+A++K                +R+  SRK K  +R+   +AS   N+  + N   +       +     P    PKK       +GG  G     V     KK+
Sbjct:   82 IRPLDRKMKYQVDKMLKVALSDGKGLDES--LSYAPNPGQLATSG--------------GLDDDEEGIEGSSGAKDGIYRAPRLAAVPYEEEERAQVKQAKQDERNRKRLQKSTILAELREEFSERPTEILASGTHVVDKEIAREEAEKK---------DFEESRFVRVVTSRKDKIRKRQREMEASRTDNVGSIENFASVQDILSLDKSKHRIPTPREPKK-------IGGKTGGIFSHVDAPTEKKR 298          
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Match: UPI00138FC27A (neuroguidin n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FC27A)

HSP 1 Score: 86.3 bits (212), Expect = 1.660e-14
Identity = 72/212 (33.96%), Postives = 112/212 (52.83%), Query Frame = 3
Query:    3 LRPLDHKLKYETDKLLRLAHTGEGAPENDPLSYRPNPGALVGPGEEXXXXXXXXXXXXXXXXXASLSKGPGGAGAGVYRPPRMTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDIGTNMFKEDAKRKMQXXXXXXXXXXXDHMIRMQLSRKQKKERRRITQDASMMSNIADVGNVGELMRWTDDAPEESGPKKGK 638
            LRP+D K+KY+ DKL++L   G    +NDPL +RPNP  ++G  +E                 +  +K      +G+Y PP+++AVPYD+   + K+ K+    K+R+  S +L  LRE+FSE P  + +D   N     A  K  XXXXXXXXXXX + IR+   +++K +  R+  D   +++ +D+     L    D+ P      KGK
Sbjct:  117 LRPIDQKMKYQIDKLVKLVTAGLAGTDNDPLRFRPNPENMLGKLDESEDDSET----------SDTAKA-----SGIYVPPKVSAVPYDEGYGSRKERKLEEHTKKRVLNSRLLQELREEFSEAPVEIREDTLNNR----AMLKXXXXXXXXXXXXXXNFIRLAAKKRKKGDSARMKSDLDDLTSFSDLS---ALTGDKDERPSRFNSSKGK 306          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1014.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J951_9PHAE1.700e-2433.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8D0B410_9SAUR5.650e-1834.27Neuroguidin n=2 Tax=Salvator merianae TaxID=96440 ... [more]
A0A835ZC79_9STRA7.660e-1740.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R5P9_9STRA7.050e-1637.77Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A670K2T8_PODMU8.900e-1631.16Neuroguidin n=3 Tax=Lacertinae TaxID=162266 RepID=... [more]
A0A067CYY5_SAPPC1.920e-1531.30Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A4D9DG17_9STRA8.250e-1532.67Sas10 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A5D6XJV1_9STRA1.070e-1434.72Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VTM7_9STRA1.480e-1430.12Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
UPI00138FC27A1.660e-1433.96neuroguidin n=1 Tax=Nematostella vectensis TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1014contigC-australica_Contig_1014:3195..6932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FH58
Preferred nameNGDN
PFAMsSas10,Sas10_Utp3
Model size2472
Max annot lvl2759|Eukaryota
KEGG koko:K08873,ko:K14765,ko:K14767
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons13
Evalue3.37e-13
EggNOG OGsKOG3117@1|root,KOG3117@2759|Eukaryota
EC2.7.11.1
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size480
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.5365877-UTR-C-australica_Contig_1014:3194..32601682586748.5365877-UTR-C-australica_Contig_1014:3194..3260Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 3195..3260 +
1682586748.5540848-UTR-C-australica_Contig_1014:3393..34911682586748.5540848-UTR-C-australica_Contig_1014:3393..3491Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 3394..3491 +
1682586748.564029-UTR-C-australica_Contig_1014:3561..36451682586748.564029-UTR-C-australica_Contig_1014:3561..3645Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 3562..3645 +
1682586748.6393085-UTR-C-australica_Contig_1014:4703..56241682586748.6393085-UTR-C-australica_Contig_1014:4703..5624Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 4704..5624 +
1682586748.6481462-UTR-C-australica_Contig_1014:5827..59541682586748.6481462-UTR-C-australica_Contig_1014:5827..5954Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 5828..5954 +
1682586748.6582165-UTR-C-australica_Contig_1014:6037..63411682586748.6582165-UTR-C-australica_Contig_1014:6037..6341Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 6038..6341 +
1682586748.667724-UTR-C-australica_Contig_1014:6401..65081682586748.667724-UTR-C-australica_Contig_1014:6401..6508Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 6402..6508 +
1682586748.6761754-UTR-C-australica_Contig_1014:6572..66501682586748.6761754-UTR-C-australica_Contig_1014:6572..6650Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 6573..6650 +
1682586748.6843367-UTR-C-australica_Contig_1014:6725..69321682586748.6843367-UTR-C-australica_Contig_1014:6725..6932Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1014 6726..6932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586748.5736148-CDS-C-australica_Contig_1014:3645..36901682586748.5736148-CDS-C-australica_Contig_1014:3645..3690Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 3646..3690 +
1682586748.582615-CDS-C-australica_Contig_1014:3809..39151682586748.582615-CDS-C-australica_Contig_1014:3809..3915Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 3810..3915 +
1682586748.5922997-CDS-C-australica_Contig_1014:4027..41751682586748.5922997-CDS-C-australica_Contig_1014:4027..4175Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 4028..4175 +
1682586748.602179-CDS-C-australica_Contig_1014:4272..43461682586748.602179-CDS-C-australica_Contig_1014:4272..4346Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 4273..4346 +
1682586748.610751-CDS-C-australica_Contig_1014:4431..44901682586748.610751-CDS-C-australica_Contig_1014:4431..4490Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 4432..4490 +
1682586748.6276145-CDS-C-australica_Contig_1014:4655..47031682586748.6276145-CDS-C-australica_Contig_1014:4655..4703Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1014 4656..4703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1014.3.1prot_C-australica_Contig_1014.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1014 3646..4703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1014.3.1

>prot_C-australica_Contig_1014.3.1 ID=prot_C-australica_Contig_1014.3.1|Name=mRNA_C-australica_Contig_1014.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=160bp
MTAVPYDDEKNTEKKEKIATRKKERLRRSEILDTLREDFSERPERVVDDI
GTNMFKEDAKRKMQEEDEERKNFEEDHMIRMQLSRKQKKERRRITQDASM
MSNIADVGNVGELMRWTDDAPEESGPKKGKGSARNVGGALGAAVGAVGQT
MRKKKTRRK*
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mRNA from alignment at C-australica_Contig_1014:3195..6932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1014.3.1 ID=mRNA_C-australica_Contig_1014.3.1|Name=mRNA_C-australica_Contig_1014.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3738bp|location=Sequence derived from alignment at C-australica_Contig_1014:3195..6932+ (Chrysoparadoxa australica CS_1217)
AGTTACGCCCATTGGACCACAAACTCAAATATGAGACAGACAAGCTCTTG CGGCTGGCTCACACCGGTAGGCAATTAAAATGAGGACCACGTTACTGCTT TTTTTGTTTGTGCCTTCTTTTTCCTCATTCCATTCACTCATCCCACTCAT TCACTCATCCCACTCATTCACTCATCCCACTCATTCACTCACTACTCAGG TGAAGGTGCCCCTGAGAATGACCCTCTGTCATATCGCCCCAACCCTGGAG CACTGGTGGGACCAGGGGAGGAGGAGGAGGAGGAGCAGGAGGAACAGGTG CTAGCCCCTCCTCCCGTCATACCCCAACCAAGCCTTTTCCAACCCATCGT ACTTGTTTCCGTTTCAGTCCCCAGCAGCCTCGTCATCCAAGCCAGCATCA CTGTCCAAGGGCCCTGGCGGGGCTGGGGCTGGGGTCTACAGACCACCTCG AATGACGGCAGTGCCGTATGACGATGAGAAGAATACTGAGAAGAAGGTAC GGCTTCGGTGTACTCTAGGCCTTCTGCAGCTTCGATGCTTTGCTACTTCT GTGCTGTGGGGTAGTGGGCTGGTGGGACAATTCCCTGCCTTTCGCTTACA CTTGCACTTGCACAGGAGAAAATCGCCACAAGGAAGAAGGAACGTTTGCG CCGGAGTGAGATCTTGGACACCCTTCGTGAGGATTTCAGCGAGAGGCCAG AGAGGGTTGTGGACGATATTGGTAAGTTGGGAGTTGAGAGTTGAGTTAGG AGGTCAAGTTGGCATGTGGGGCTTCTTAGCACAGTAACCAGTGAGAACTG AGCTGCATGCACCACCATTGGCATTGGCACCAGGCACGAACATGTTTAAA GAGGACGCCAAGCGCAAGATGCAAGAGGAGGATGAGGAGAGGAAGAACTT TGAGGAGGACCACATGATACGAATGCAGCTCAGCAGGAAGCAGAAGAAGG AGCGGCGAAGGATAACCCAAGACGCCTCCATGTAAGATGATGCCTCACCT CAGCTGATTGACCTGACCGGCTGTGGCTGTGGCAGTCCCTAGAGGAGGCC TAATTGTGTCCTGCCTGTCATTTTTCAGGATGAGTAATATAGCTGACGTG GGCAACGTGGGAGAGCTCATGAGATGGACAGATGATGCACCAGAGGAATC AGGTATTGAATTGAAATGAAAGGCCCTGGACCTGTGATGGAATGACTCCT GTGGCTTGAGCTTGACCTTTGTTGTGATGCAACTCAGGTCCCAAGAAGGG GAAGGGCAGCGCACGTAATGTGGGAGGGGCGCTTGGAGCAGCTGTGGTGA GCAATGAGTGATGATGAAAGGCTTGACTGGATATAGCTGACGTGACGTGA GGGAGCCCGGCACCGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGCTGTT ATTTTCAGCCAGCTCTGATTTGTTCTTACCTTTTGCTCTGCTGTGACGTG CTTGATGACAGGGTGCTGTAGGCCAAACCATGCGCAAGAAAAAGACACGG AGGAAGTAAAGAGGGAAGAGATGCCTGCCGGCCGAGCCACAAACACTGGC TTGCTTCAATGCTGTGCCAGCTCTGTGGCAGCACAGTGGCCGATGTACTC CTGGCTCTCGGTCATAATCATCTGAGCAGCGTTGCAGGCCTCGTTCATGG CTGCGAAAGGACGTCCTGTGCAGCTGCAGCTTGCCCAGGAGTGATGATCA ACCCAGTAGCCTAGCAAGGCTCAGTCTTGAGGAGTAGGAAATACCAGGGC AGCCCACATGCTTATATGCCGCACGCAACTGCCAAGGTTGCAATGGGAAT GATGATGTAGCCACTTACACTGAAGTGCAGCACTTAGTCGTTTAGCACCC AAGTAAGACAACAGGCTGATTGGTTTGTGAATAGCTAGTGACTTGAAGCC ATGAGTGAGCAGGCAATGACTTCGTTCACCTGTGCTAATTTTTGGAACTA GACTGGCTACTGGCTCGGCCCTCTTGTCCCGAAAGGAGAGAATACAAAAA AAATCACATCTATGTAGTTGCTTGCCCGGCTGCAGCCTGCAGCCCTCCTA GGCTACACCCAGACCTCTTCAGCTGTGTCCACAATAGGTTCAGGTTCATC CGCCACATCAGGCCGCTCTCCCTCCTCTCCCTTCTCTGCCTTCTCAGCTT CAGCTGCAGCCATGAGATCAGCCACCGTCACCACTGCCGCCTTTTTGGGT GGCTGGTTCTCGGAACCCTCTCCCAGCTCCTGCTGCTTGAACCGCTTACT GCCTCTTCTTTCCGGCGAGCTGCTAGCATCACAGCACTTCTGGTTGTTGC CAAACAGCTTGCTCGCTGTTGATCTTGTTGACCTGCTAGAGCTGAGGGCG CTGATCTGGCTAATCATGGAGTGGTTGCTGCTTCCCACAGACATGACCGA GAAGGAGGCCTTGATGGACTGGCGGATGCGCTGTGATCCAAGGAGGCAAG ATTGTGCGTAAGCGTGAGTGAGGAAGGGGAGCAATGCATGCATGCCAGTG TAATGAATGGTGTTCTGCCTCGCCTCTCGCCACATCCTCCCAGCCAGGAG CAGACAGATTGATTGATTCATAAGTTTGTCATGTCAGTCTGTGAGTCTGT CAGTCTGCAGGTTGGCAGCAACCGCCACCTCACCTCTTTCTGGGTGGAGT TTGGTGCAGCCGCGCTTGGCGGCTCGTCGACAGCAAAGCGGTAGAAAAGG GGGATGTTCCGAAAGCCGTGATTCCGAGCAACGTGGTACAGGAGCCCTCT ATTCAGCATGGCCTGGTTCAATGCCGCGGAGGATGGATTCACAGGTGCGT CGTTAGCTCACAGTGCAGAGCGTCTGTCATATCTTGTTGCCAGCCTACCT GCCCCATCTCCACTGCCTGCTTCTCGTCCTTGGCGTTCCCGCTGCTGATG AGCCACTTGACCGCATCGGTGCCAAGCCAGCACGACTTAAATGTCATGAG CCGCCAGGTGCGGTCCCTGACTGCGATGACTTGCCGCATCTCAGCTGCCA AGGCCTCACAGTCCCATGACTGATCTATAGGGGCTGCAACTTCTTCATGG GTGCTTGGGGCGTCAAGGTTGGGCAGGAAACGGTAGAACAGATACGCATT GATGAAGTCATGGCCGCTTGAGACGTGAGCGATGTAGCCTTCCTCAAGCA TTACCTGAGCAAGGAGGGTCACTCAGAGGCCAAATAAGGAAGGGAGGGAT GGCATAGCTCACCTGACCCATCCCCACGGCTGCTTCCTCATCGACGGCAA AGCCTGTTTTAACTAGCCATTTCACAGCTTCTGAGCTCACAAAGCACTGT TTGTAGGTCTGGAGGTAAGGGGGAGAGTAAGTTAGGGAGGGAAAGTGAGC CAGGAGGGCGGGATAAGAGCACCTTCAGCTTCCAAGTTCTGTCCTTTATC TCAAGCTCTGACTTCATTTCATTTGCCAGCAACCAGAAGCGGCTCTCATC TCCCAGGCTGTGGAAGGAGGCGAAGCATGGTAAGAGAGAGGCGGGAAGGT GGATTAGAACTAGAATGGGGGGACCTTGGAGACCTGCTCATGGCCCTGAA GCAACCAAGGGCACGCACGCTCTAGGATCTAGTGGGAGTCCCCTTCTCCC CCTTTCTGCGTGCTCCAGATATATCTGCTCGGGCGAAAGAATTTTGGGAG CTCTAATAAAAACGGTACTTCTACCAATCCTGAACAAGGTCCGCTCAGAG CAAGAGAGCGAGAGCAGCGAAAGGCGAAACTCGGAAGG
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Coding sequence (CDS) from alignment at C-australica_Contig_1014:3195..6932+

>mRNA_C-australica_Contig_1014.3.1 ID=mRNA_C-australica_Contig_1014.3.1|Name=mRNA_C-australica_Contig_1014.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=480bp|location=Sequence derived from alignment at C-australica_Contig_1014:3195..6932+ (Chrysoparadoxa australica CS_1217)
ATGACGGCAGTGCCGTATGACGATGAGAAGAATACTGAGAAGAAGGAGAA
AATCGCCACAAGGAAGAAGGAACGTTTGCGCCGGAGTGAGATCTTGGACA
CCCTTCGTGAGGATTTCAGCGAGAGGCCAGAGAGGGTTGTGGACGATATT
GGCACGAACATGTTTAAAGAGGACGCCAAGCGCAAGATGCAAGAGGAGGA
TGAGGAGAGGAAGAACTTTGAGGAGGACCACATGATACGAATGCAGCTCA
GCAGGAAGCAGAAGAAGGAGCGGCGAAGGATAACCCAAGACGCCTCCATG
ATGAGTAATATAGCTGACGTGGGCAACGTGGGAGAGCTCATGAGATGGAC
AGATGATGCACCAGAGGAATCAGGTCCCAAGAAGGGGAAGGGCAGCGCAC
GTAATGTGGGAGGGGCGCTTGGAGCAGCTGTGGGTGCTGTAGGCCAAACC
ATGCGCAAGAAAAAGACACGGAGGAAGTAA
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