mRNA_C-australica_Contig_10052.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10052.2.1
Unique NamemRNA_C-australica_Contig_10052.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10052.2.1 vs. uniprot
Match: UPI001FF64235 (hypothetical protein n=1 Tax=Qipengyuania sp. S6317L1 TaxID=2926410 RepID=UPI001FF64235)

HSP 1 Score: 119 bits (298), Expect = 1.590e-27
Identity = 173/198 (87.37%), Postives = 175/198 (88.38%), Query Frame = -2 
Query:    3 VDEDELLELDEELELEDEPPLXXXXXXXXXXXELLLEELELPXXXXXXXXXXXXXXXXXXXXXXDEELEHDXXEEDDELEPPVVEPPGSGSPPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEVEVVEPPEEDELLXXXXXXXXXXXLDEEPPPVLVLDTLPDVLEMLPEVXXXXXXXXXXXXVLVLE 596
            +DEDELLELDEELELED    XXXXXXXXXXXELLLEELELPXXXXXXXXX  XXXXXXXXXX DEELE  XX       PPVVEPPG GSPPLLXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXLEVEVVEPPEEDELLXXXXXXXXXXXLDEEPPPVLVLDTLPDVLEMLPEVXXXXXXXXXX  VLVL+
Sbjct:  155 LDEDELLELDEELELEDXXXXXXXXXXXXXXXELLLEELELPXXXXXXXXXLLXXXXXXXXXXDDEELEXXXXXXXXXXXPPVVEPPGCGSPPLLXXXXXXXXXXXXXXXXXXXXXXXXXEELEXXXXXXXLEVEVVEPPEEDELLXXXXXXXXXXXLDEEPPPVLVLDTLPDVLEMLPEVXXXXXXXXXXVEVLVLD 352
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10052.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FF642351.590e-2787.37hypothetical protein n=1 Tax=Qipengyuania sp. S631... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10052contigC-australica_Contig_10052:2..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size693
Hectar predicted targeting categoryother localisation
Exons1
Cds size693
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.632627-CDS-C-australica_Contig_10052:1..6941682586739.632627-CDS-C-australica_Contig_10052:1..694Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10052 2..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10052.2.1prot_C-australica_Contig_10052.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10052 2..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10052.2.1

>prot_C-australica_Contig_10052.2.1 ID=prot_C-australica_Contig_10052.2.1|Name=mRNA_C-australica_Contig_10052.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=231bp
VSSTSTSTTSGNVSSTSTTSGNISSTSGNVSSTSTGGGSSSSSSSSSSSS
SSSSSSSSSGGSTTSTSSGGSGSSGSSSSGGSSSSSSSSSSSSSSSSSSG
GSGGSNGGDPLPGGSTTGGSSSSSSSSSSCSSSSSSSGGSNGGSGGSNGG
SSSSSSSGSSSSSSSSSGGSNGGSNGGSNGGSSSSSSSSSSSSSSSSSTA
ATNTRANGGAKGCTSSTTTNGRSRATKNRS*
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mRNA from alignment at C-australica_Contig_10052:2..694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10052.2.1 ID=mRNA_C-australica_Contig_10052.2.1|Name=mRNA_C-australica_Contig_10052.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=693bp|location=Sequence derived from alignment at C-australica_Contig_10052:2..694- (Chrysoparadoxa australica CS_1217)
GTCTCAAGCACCAGCACCTCGACGACTTCGGGCAATGTATCGAGCACGAG
CACGACCTCGGGCAACATTTCCAGCACGTCAGGCAATGTGTCGAGCACCA
GCACGGGTGGCGGTTCCTCGTCGAGCTCCAGCTCTTCGTCTTCAAGCAGC
TCTTCCTCGAGCAGCTCGTCTTCTTCGGGCGGTTCGACCACTTCGACTTC
AAGCGGCGGTTCCGGTTCGTCCGGTTCAAGCTCTTCAGGCGGAAGTTCTT
CGTCATCGAGCTCCAGCTCAAGTTCCAGCAGCTCGTCGTCGTCGAGCGGC
GGCTCGGGCGGCAGCAATGGCGGTGACCCACTTCCGGGAGGTTCGACTAC
GGGCGGTTCAAGCTCGTCGTCTTCTTCTAGCTCGTCGTGCTCCAGCTCTT
CGTCATCAAGCGGCGGTTCGAACGGTGGTTCCGGCGGCAGCAATGGTGGT
TCATCAAGCTCGTCATCGAGCGGCAGCTCAAGCTCTTCAAGCAGCAGTTC
GGGCGGCTCCAACGGTGGGTCGAACGGGGGCTCCAATGGCGGCTCGTCTT
CGAGCTCCAGTTCCTCATCGAGCTCGAGCAGTTCGTCTTCGTCTACCGCC
GCCACCAATACCCGCGCGAACGGCGGCGCAAAAGGCTGCACATCAAGCAC
CACCACCAACGGCAGGTCCAGGGCGACAAAAAACAGATCATGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10052:2..694-

>mRNA_C-australica_Contig_10052.2.1 ID=mRNA_C-australica_Contig_10052.2.1|Name=mRNA_C-australica_Contig_10052.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=693bp|location=Sequence derived from alignment at C-australica_Contig_10052:2..694- (Chrysoparadoxa australica CS_1217)
GTCTCAAGCACCAGCACCTCGACGACTTCGGGCAATGTATCGAGCACGAG
CACGACCTCGGGCAACATTTCCAGCACGTCAGGCAATGTGTCGAGCACCA
GCACGGGTGGCGGTTCCTCGTCGAGCTCCAGCTCTTCGTCTTCAAGCAGC
TCTTCCTCGAGCAGCTCGTCTTCTTCGGGCGGTTCGACCACTTCGACTTC
AAGCGGCGGTTCCGGTTCGTCCGGTTCAAGCTCTTCAGGCGGAAGTTCTT
CGTCATCGAGCTCCAGCTCAAGTTCCAGCAGCTCGTCGTCGTCGAGCGGC
GGCTCGGGCGGCAGCAATGGCGGTGACCCACTTCCGGGAGGTTCGACTAC
GGGCGGTTCAAGCTCGTCGTCTTCTTCTAGCTCGTCGTGCTCCAGCTCTT
CGTCATCAAGCGGCGGTTCGAACGGTGGTTCCGGCGGCAGCAATGGTGGT
TCATCAAGCTCGTCATCGAGCGGCAGCTCAAGCTCTTCAAGCAGCAGTTC
GGGCGGCTCCAACGGTGGGTCGAACGGGGGCTCCAATGGCGGCTCGTCTT
CGAGCTCCAGTTCCTCATCGAGCTCGAGCAGTTCGTCTTCGTCTACCGCC
GCCACCAATACCCGCGCGAACGGCGGCGCAAAAGGCTGCACATCAAGCAC
CACCACCAACGGCAGGTCCAGGGCGACAAAAAACAGATCATGA
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