mRNA_C-australica_Contig_10047.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10047.1.1
Unique NamemRNA_C-australica_Contig_10047.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A222E5W7_9RHOB (Bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E5W7_9RHOB)

HSP 1 Score: 256 bits (654), Expect = 5.970e-85
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKYA 447
            TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIR+LNIDAFIEKYA
Sbjct:   54 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRDLNIDAFIEKYA 202
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A0P7W7Z1_9RHOB (Acetyltransferase (Isoleucine patch superfamily) n=1 Tax=Rhodobacteraceae bacterium HLUCCA08 TaxID=1666913 RepID=A0A0P7W7Z1_9RHOB)

HSP 1 Score: 225 bits (574), Expect = 1.120e-72
Identity = 132/148 (89.19%), Postives = 139/148 (93.92%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            TIGKMCSIAN ARINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WRRAD VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIK RF  AQ+EALQEIA+WDWSR +Y+AALPDIR L+IDAFIEKY
Sbjct:   60 TIGKMCSIANGARINPGNHPTWRAVQHHSVYRAEAYGLGEDDHDFFDWRRADWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKRRFTPAQAEALQEIAVWDWSRARYKAALPDIRALDIDAFIEKY 207
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A843YBT9_9RHOB (Chloramphenicol acetyltransferase n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A843YBT9_9RHOB)

HSP 1 Score: 219 bits (557), Expect = 4.190e-70
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            TIGK CSIANA RINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WRR + VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPAR IK RF  AQ++ALQEIA+WDWSREKY+AALPDIR L IDAFIEKY
Sbjct:   60 TIGKFCSIANATRINPGNHPTWRAVQHHSVYRAEAYGLGEDDHDFFDWRRENWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPAREIKRRFTDAQADALQEIAVWDWSREKYKAALPDIRALEIDAFIEKY 207
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A238JAN5_9RHOB (Chloramphenicol acetyltransferase n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238JAN5_9RHOB)

HSP 1 Score: 219 bits (557), Expect = 4.470e-70
Identity = 128/148 (86.49%), Postives = 136/148 (91.89%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            TIGK CSIANA RINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WRR + VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIK RF  AQ+EAL +IA+WDW R+KY+AALPDIR LNIDAFIEKY
Sbjct:   60 TIGKFCSIANATRINPGNHPTWRAVQHHSVYRAEAYGLGEDDHDFFDWRRENWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKRRFSEAQAEALMDIAVWDWPRDKYQAALPDIRALNIDAFIEKY 207
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: S9QV44_9RHOB (Chloramphenicol acetyltransferase n=1 Tax=Salipiger mucosus DSM 16094 TaxID=1123237 RepID=S9QV44_9RHOB)

HSP 1 Score: 218 bits (556), Expect = 6.140e-70
Identity = 128/148 (86.49%), Postives = 136/148 (91.89%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            TIGK CSIANA RINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WR+AD VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPAR I+ RF  AQ+EALQEIA+WDW RE Y+AALPDIR L+IDAFIEKY
Sbjct:   60 TIGKFCSIANATRINPGNHPTWRAVQHHSVYRAEAYGLGEDDRDFFEWRKADWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARPIRRRFSEAQAEALQEIAVWDWPRETYKAALPDIRALDIDAFIEKY 207
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A1X4P0C5_9RHOB (Chloramphenicol acetyltransferase n=1 Tax=Marivita cryptomonadis TaxID=505252 RepID=A0A1X4P0C5_9RHOB)

HSP 1 Score: 218 bits (555), Expect = 8.710e-70
Identity = 127/148 (85.81%), Postives = 138/148 (93.24%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            +IGKMCSIAN+ RINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WR+AD VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVT+DVAPYTVVGGVPARVIK RF   Q+EALQ+IA+WDWSR+ YRAALPDIR L+IDAFIEKY
Sbjct:   60 SIGKMCSIANSTRINPGNHPTWRAVQHHSVYRAEAYGLGEDDHDFFEWRKADWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTKDVAPYTVVGGVPARVIKRRFTEPQAEALQDIAVWDWSRDTYRAALPDIRALDIDAFIEKY 207
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A1Y0E811_9RHOB (Chloramphenicol acetyltransferase n=1 Tax=Yoonia vestfoldensis TaxID=245188 RepID=A0A1Y0E811_9RHOB)

HSP 1 Score: 218 bits (554), Expect = 1.240e-69
Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            TIGKMCSIANA RINPGNHPTWRA+QHHSVYRAEAYGLG+DD +FF WR+AD VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPAR+IK  F   Q+EAL EIA+WDWSR+ YRAALPDIR L IDAFIEKY
Sbjct:   60 TIGKMCSIANATRINPGNHPTWRAVQHHSVYRAEAYGLGDDDQDFFAWRKADWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARLIKRGFTPPQAEALMEIAVWDWSRDAYRAALPDIRTLEIDAFIEKY 207
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A0J9E4S1_9RHOB (Chloramphenicol acetyltransferase n=1 Tax=Candidatus Rhodobacter lobularis TaxID=1675527 RepID=A0A0J9E4S1_9RHOB)

HSP 1 Score: 217 bits (552), Expect = 1.800e-69
Identity = 125/148 (84.46%), Postives = 135/148 (91.22%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            +IGKMCSIANA RINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WR+AD VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXX  TRDVAPYTVVGGVPARVIK RF   Q++ALQ+IA+WDW REKY+AALPDIR L I+AFIEKY
Sbjct:   51 SIGKMCSIANATRINPGNHPTWRAVQHHSVYRAEAYGLGEDDQDFFEWRKADWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXVATRDVAPYTVVGGVPARVIKRRFTPVQADALQQIAVWDWPREKYKAALPDIRALEIEAFIEKY 198
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A2G6IGF9_9RHOB (Chloramphenicol acetyltransferase n=1 Tax=Rhodobacterales bacterium TaxID=1948890 RepID=A0A2G6IGF9_9RHOB)

HSP 1 Score: 216 bits (551), Expect = 3.420e-69
Identity = 128/148 (86.49%), Postives = 135/148 (91.22%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKY 444
            TIGKMCSIAN ARINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WR+AD VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVV GVPAR IK RF  AQ++ALQEIA+WDW RE Y+AALPDIR L IDAFIEKY
Sbjct:   60 TIGKMCSIANGARINPGNHPTWRAVQHHSVYRAEAYGLGEDDHDFFEWRKADWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVVGVPAREIKRRFSEAQADALQEIAVWDWERETYKAALPDIRALEIDAFIEKY 207
[Close]
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Match: A0A2E2JX73_9RHOB (Chloramphenicol acetyltransferase n=1 Tax=Rhodovulum sp. TaxID=34009 RepID=A0A2E2JX73_9RHOB)

HSP 1 Score: 216 bits (550), Expect = 4.850e-69
Identity = 127/149 (85.23%), Postives = 136/149 (91.28%), Query Frame = 1 
Query:    1 TIGKMCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPARVIKHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKYA 447
            TIGKMCSIAN+ RINPGNHPTWRA+QHHSVYRAEAYGLGEDD +FF WR+ D VTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPAR IK RF  AQ+EAL +IA+WDW RE+Y AALPDIR L+IDAFIEKYA
Sbjct:   60 TIGKMCSIANSTRINPGNHPTWRAVQHHSVYRAEAYGLGEDDHDFFEWRKKDWVTIGHDVWXXXXXXXXXXXXXXXXXXXXXXXXVTRDVAPYTVVGGVPAREIKRRFTEAQAEALMQIAVWDWPRERYAAALPDIRALSIDAFIEKYA 208
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10047.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E5W7_9RHOB5.970e-8599.33Bifunctional N-acetylglucosamine-1-phosphate uridy... [more]
A0A0P7W7Z1_9RHOB1.120e-7289.19Acetyltransferase (Isoleucine patch superfamily) n... [more]
A0A843YBT9_9RHOB4.190e-7087.16Chloramphenicol acetyltransferase n=2 Tax=Rhodobac... [more]
A0A238JAN5_9RHOB4.470e-7086.49Chloramphenicol acetyltransferase n=1 Tax=Pelagimo... [more]
S9QV44_9RHOB6.140e-7086.49Chloramphenicol acetyltransferase n=1 Tax=Salipige... [more]
A0A1X4P0C5_9RHOB8.710e-7085.81Chloramphenicol acetyltransferase n=1 Tax=Marivita... [more]
A0A1Y0E811_9RHOB1.240e-6985.81Chloramphenicol acetyltransferase n=1 Tax=Yoonia v... [more]
A0A0J9E4S1_9RHOB1.800e-6984.46Chloramphenicol acetyltransferase n=1 Tax=Candidat... [more]
A0A2G6IGF9_9RHOB3.420e-6986.49Chloramphenicol acetyltransferase n=1 Tax=Rhodobac... [more]
A0A2E2JX73_9RHOB4.850e-6985.23Chloramphenicol acetyltransferase n=1 Tax=Rhodovul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10047contigC-australica_Contig_10047:1..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123237.Salmuc_02645
PFAMsHexapep
Model size450
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K00638
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.9e-67
EggNOG OGsCOG0110@1|root,COG0110@2|Bacteria,1MUCJ@1224|Proteobacteria,2TSYD@28211|Alphaproteobacteria
EC2.3.1.28
DescriptionCOG0110 Acetyltransferase (isoleucine patch superfamily
Cds size438
COG categoryM
BRITEbr01600,ko00000,ko01000,ko01504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.208997-UTR-C-australica_Contig_10047:0..121682586739.208997-UTR-C-australica_Contig_10047:0..12Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10047 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586739.2188752-CDS-C-australica_Contig_10047:12..4501682586739.2188752-CDS-C-australica_Contig_10047:12..450Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10047 13..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10047.1.1prot_C-australica_Contig_10047.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10047 13..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10047.1.1

>prot_C-australica_Contig_10047.1.1 ID=prot_C-australica_Contig_10047.1.1|Name=mRNA_C-australica_Contig_10047.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=146bp
MCSIANAARINPGNHPTWRAIQHHSVYRAEAYGLGEDDTEFFGWRRADHV
TIGHDVWIGHGVTVTAGVTIGDGAVVGAGAVVTRDVAPYTVVGGVPARVI
KHRFDAAQSEALQEIAIWDWSREKYRAALPDIRNLNIDAFIEKYA*
back to top

mRNA from alignment at C-australica_Contig_10047:1..450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10047.1.1 ID=mRNA_C-australica_Contig_10047.1.1|Name=mRNA_C-australica_Contig_10047.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=450bp|location=Sequence derived from alignment at C-australica_Contig_10047:1..450+ (Chrysoparadoxa australica CS_1217)
ACCATCGGCAAGATGTGTTCGATTGCCAATGCAGCCCGGATCAATCCGGG
GAACCACCCCACATGGCGCGCCATTCAGCATCATTCGGTCTACCGAGCCG
AAGCCTATGGTTTGGGCGAAGACGATACCGAGTTCTTTGGCTGGCGCAGG
GCCGATCATGTGACCATCGGGCATGACGTCTGGATCGGGCACGGTGTCAC
GGTCACGGCAGGCGTAACCATCGGTGACGGTGCCGTTGTTGGCGCTGGTG
CGGTCGTGACCCGCGATGTGGCACCGTATACGGTTGTTGGCGGGGTCCCG
GCCCGGGTCATCAAGCATCGATTTGACGCTGCTCAGTCAGAGGCGCTTCA
AGAAATTGCGATCTGGGACTGGTCGCGCGAAAAATATAGGGCTGCATTGC
CGGACATTCGCAATCTGAACATCGACGCCTTCATCGAAAAATACGCCTGA
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_10047:1..450+

>mRNA_C-australica_Contig_10047.1.1 ID=mRNA_C-australica_Contig_10047.1.1|Name=mRNA_C-australica_Contig_10047.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=438bp|location=Sequence derived from alignment at C-australica_Contig_10047:1..450+ (Chrysoparadoxa australica CS_1217)
ATGTGTTCGATTGCCAATGCAGCCCGGATCAATCCGGGGAACCACCCCAC
ATGGCGCGCCATTCAGCATCATTCGGTCTACCGAGCCGAAGCCTATGGTT
TGGGCGAAGACGATACCGAGTTCTTTGGCTGGCGCAGGGCCGATCATGTG
ACCATCGGGCATGACGTCTGGATCGGGCACGGTGTCACGGTCACGGCAGG
CGTAACCATCGGTGACGGTGCCGTTGTTGGCGCTGGTGCGGTCGTGACCC
GCGATGTGGCACCGTATACGGTTGTTGGCGGGGTCCCGGCCCGGGTCATC
AAGCATCGATTTGACGCTGCTCAGTCAGAGGCGCTTCAAGAAATTGCGAT
CTGGGACTGGTCGCGCGAAAAATATAGGGCTGCATTGCCGGACATTCGCA
ATCTGAACATCGACGCCTTCATCGAAAAATACGCCTGA
back to top