mRNA_C-australica_Contig_1004.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1004.2.1
Unique NamemRNA_C-australica_Contig_1004.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match: D8LEM3_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM3_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 9.560e-9
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  164 SRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAGMHKNSIFGAMDGAVG-EVSATSAEEL 430
            S  V+K+L SG GG+SEL   L   +V +  +R +  D GS  +F R+ +VGEEVGGM KG+A + KN++F   +GA G +   +S E+L
Sbjct:   51 SNSVIKLLGSGIGGVSELCSTLLDSMVAFCGVR-VGDDKGS-ARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDL 138
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BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match: A0A7S4HCW9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HCW9_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 3.140e-5
Identity = 29/89 (32.58%), Postives = 41/89 (46.07%), Query Frame = 2 
Query:  161 DSRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAGMHKNSIFGAMDGAVGEVSATSAEE 427
            + +  +K LASG  G   L  HL    VV+GA R       +  KF  +  +GE  GGM KG+A  H   +   ++G  G +     EE
Sbjct:   52 EGKAKLKRLASGTDGYRGLRAHLAEDAVVYGAFRVTTAGESTASKFTFVTSIGENAGGMVKGRATAHAQCVEAGLEGTAGGIQLAGEEE 140
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BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Match: A0A0L0D7T4_THETB (Cofilin/tropomyosin-type actin-binding protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D7T4_THETB)

HSP 1 Score: 54.3 bits (129), Expect = 9.880e-5
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:  161 DSRGVVKVLASGEGGMSELSPHLDPGLVVWGALRCLAPDGGSG-VKFVRLAWVGEEVGGMAKGKAGMHKNSI 373
            +S+  ++V A+GEGG  EL   L    + +  LR    D  S  +KFV + WVG+ VGGMA+G+  +HK S+
Sbjct:   31 ESKKKLQVDATGEGGYDELMAFLTDDKITYALLRLTDGDQESQRIKFVAITWVGQNVGGMARGRVTVHKPSV 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEM3_ECTSI9.560e-943.33ADF-H domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S4HCW9_9EUKA3.140e-532.58Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A0L0D7T4_THETB9.880e-540.28Cofilin/tropomyosin-type actin-binding protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1004contigC-australica_Contig_1004:3080..4267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD33751
PFAMsCofilin_ADF
Model size959
Max annot lvl2759|Eukaryota
KEGG koko:K20520
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.28e-06
EggNOG OGsKOG3655@1|root,KOG3655@2759|Eukaryota
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-23_002470.1
Descriptionactin binding
Cds size282
COG categoryZ
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1004.2.1prot_C-australica_Contig_1004.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1004 3629..4062 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.4135442-UTR-C-australica_Contig_1004:3079..35101682586738.4135442-UTR-C-australica_Contig_1004:3079..3510Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 3080..3510 -
1682586738.423196-UTR-C-australica_Contig_1004:3587..36281682586738.423196-UTR-C-australica_Contig_1004:3587..3628Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 3588..3628 -
1682586738.461102-UTR-C-australica_Contig_1004:4062..42671682586738.461102-UTR-C-australica_Contig_1004:4062..4267Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1004 4063..4267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.4313693-CDS-C-australica_Contig_1004:3628..37121682586738.4313693-CDS-C-australica_Contig_1004:3628..3712Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 3629..3712 -
1682586738.4408529-CDS-C-australica_Contig_1004:3793..39151682586738.4408529-CDS-C-australica_Contig_1004:3793..3915Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 3794..3915 -
1682586738.4507682-CDS-C-australica_Contig_1004:3986..40621682586738.4507682-CDS-C-australica_Contig_1004:3986..4062Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 3987..4062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1004.2.1

>prot_C-australica_Contig_1004.2.1 ID=prot_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=94bp
MSELSPHLDPGLVVWGALRCLAPDGGSGVKFVRLAWVGEEVGGMAKGKAG
MHKNSIFGAMDGAVGEVSATSAEELPGLLEEVGKVTGGWVFPV*
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mRNA from alignment at C-australica_Contig_1004:3080..4267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1004.2.1 ID=mRNA_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1188bp|location=Sequence derived from alignment at C-australica_Contig_1004:3080..4267- (Chrysoparadoxa australica CS_1217)
AGCGATCAGCTGGCTTAACCTTAGATGAAAGCGTCACAGCAGCTTATGAA
GATGTTAGAGCAGACACAAGCCCAACAGCATGGATGCTTTGCACCTATGC
CAAGGTGAGCTGTGAGCTATTAATGCCTCTGATCTGGACCTAAGCCTTGC
CTCATAATAGGATTCGCGCGGAGTAGTGAAGGTGCTTGCATCTGGGGAGG
GTGGAATGTCAGAGTTGAGCCCACACCTTGACCCTGGGTTAGTCGTATGG
GGTGCGCTGCGGTGCTTGGCACCTGATGGAGGTATGACTTATGATACTTC
GGAGGCTTAAACACCAAGACTGATCCTTTGCCCTTTGGCATCTCTAATTC
AGGCAGTGGTGTAAAGTTTGTGAGGCTGGCTTGGGTGGGTGAGGAGGTGG
GCGGCATGGCCAAGGGCAAGGCGGGCATGCATAAGAATAGCATCTTCGGA
GCTATGGATGGGGCTGTGGGAGAGGTAGATTGATGCTGTTTATACCCTTA
CGACACAGATAAGCTCACCATTACGATATGTGCTGCTCATGCTCTTGCTC
ATCAGGTATCAGCAACATCAGCTGAGGAGCTTCCAGGGTTGTTGGAGGAG
GTGGGAAAGGTGACAGGAGGCTGGGTGTTCCCAGTGTAGTTCAACCTGGT
GCATGTAAGAGCTGCTCTAACATGAGGCAGGTGAGCAGTCTATAAGAGGT
GCAAGTGGTGTGCTTGCCCTTGCTCTACCTCACAAACCTCATTCTTGGGC
TGTGCAGGTGACCTCTCCGTTGCTGTTGCCGGTGTGTTGAAGCCAGGCGT
AAGGAGTACTTCTCCCCCTCCTCAAGCGTGGACATTCAACGAGGGAGCTA
TGGAAGGCTGCAGCAAAGGCACCTGGCTTCATCTCAACCTCGCCTTACAG
GGGTTCACTGATGTGGCTTGTGATTGGGCTCTGTTGATAAGCGATGATTG
AGTTGGGAGGGATCCGAGCGGGTGAAGAGCTTTGAGCTTTTCCGCTCCTG
GTCAGAGGTCCTGAGCCCCTGGCTTGTCATATGGGGTGCACGTTTTGCGC
ATGCTCATGCTCTCCACTCACTAGCCCCAGCTCCTTCTCCAAGCCGTAGA
ATGTGGTTGTAAGACTCAAATCAAGCCAGGAGAGCCTCTCCCAGCTGAGC
ATAAAACATAATAATCCGAAGAAGAAGAAGAATCTCCA
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Coding sequence (CDS) from alignment at C-australica_Contig_1004:3080..4267-

>mRNA_C-australica_Contig_1004.2.1 ID=mRNA_C-australica_Contig_1004.2.1|Name=mRNA_C-australica_Contig_1004.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=282bp|location=Sequence derived from alignment at C-australica_Contig_1004:3080..4267- (Chrysoparadoxa australica CS_1217)
ATGTCAGAGTTGAGCCCACACCTTGACCCTGGGTTAGTCGTATGGGGTGC
GCTGCGGTGCTTGGCACCTGATGGAGGCAGTGGTGTAAAGTTTGTGAGGC
TGGCTTGGGTGGGTGAGGAGGTGGGCGGCATGGCCAAGGGCAAGGCGGGC
ATGCATAAGAATAGCATCTTCGGAGCTATGGATGGGGCTGTGGGAGAGGT
ATCAGCAACATCAGCTGAGGAGCTTCCAGGGTTGTTGGAGGAGGTGGGAA
AGGTGACAGGAGGCTGGGTGTTCCCAGTGTAG
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