mRNA_C-australica_Contig_1004.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1004.3.1
Unique NamemRNA_C-australica_Contig_1004.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1004.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1004contigC-australica_Contig_1004:4491..4803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size239
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586738.139134-CDS-C-australica_Contig_1004:4490..46811682586738.139134-CDS-C-australica_Contig_1004:4490..4681Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 4491..4681 +
1682586738.1569157-CDS-C-australica_Contig_1004:4757..48031682586738.1569157-CDS-C-australica_Contig_1004:4757..4803Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1004 4758..4803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1004.3.1prot_C-australica_Contig_1004.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1004 4491..4803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1004.3.1

>prot_C-australica_Contig_1004.3.1 ID=prot_C-australica_Contig_1004.3.1|Name=mRNA_C-australica_Contig_1004.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=79bp
KCQVGVGVGNKEESHAVLPDPGSFPGSLGEKCTQSGGMAAILYTFRGSLM
QRRYCNAVICRSLSLYTRRQTPGGRSVR*
back to top

mRNA from alignment at C-australica_Contig_1004:4491..4803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1004.3.1 ID=mRNA_C-australica_Contig_1004.3.1|Name=mRNA_C-australica_Contig_1004.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=313bp|location=Sequence derived from alignment at C-australica_Contig_1004:4491..4803+ (Chrysoparadoxa australica CS_1217)
AAGTGCCAAGTAGGAGTAGGAGTAGGAAATAAGGAGGAGAGTCACGCAGT
CCTGCCCGACCCTGGATCATTCCCTGGCTCGCTTGGAGAGAAGTGTACCC
AAAGTGGGGGGATGGCTGCCATCCTCTACACCTTTAGGGGGAGCCTTATG
CAGAGAAGATATTGCAATGCAGTGATATGCAGATCTCTTAGGTATCACTT
CTCTTTACGCCGTGGGCAAGCCACCTCTCCCCATCGCCCACACTTAGGCC
CGTCTCCGCACCTGCAGCTTATACACGAGGCGACAAACACCCGGTGGGAG
ATCAGTCAGGTAG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_1004:4491..4803+

>mRNA_C-australica_Contig_1004.3.1 ID=mRNA_C-australica_Contig_1004.3.1|Name=mRNA_C-australica_Contig_1004.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=237bp|location=Sequence derived from alignment at C-australica_Contig_1004:4491..4803+ (Chrysoparadoxa australica CS_1217)
AAGTGCCAAGTAGGAGTAGGAGTAGGAAATAAGGAGGAGAGTCACGCAGT
CCTGCCCGACCCTGGATCATTCCCTGGCTCGCTTGGAGAGAAGTGTACCC
AAAGTGGGGGGATGGCTGCCATCCTCTACACCTTTAGGGGGAGCCTTATG
CAGAGAAGATATTGCAATGCAGTGATATGCAGATCTCTTAGCTTATACAC
GAGGCGACAAACACCCGGTGGGAGATCAGTCAGGTAG
back to top