prot_C-australica_Contig_99.18.1 (polypeptide) Chrysoparadoxa australica CS_1217

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-australica_Contig_99.18.1
Unique Nameprot_C-australica_Contig_99.18.1
Typepolypeptide
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Sequence length102
Homology
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.350e-27
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0 
Query:    1 MQIFVKTLSA-TLSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQIFVKTL+  +L LDV+P++T+G V A VED EF+P  +QRL CG  Q  A+  TLE +GI +ADTLTLLL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQ-LASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.170e-22
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 0 
Query:    1 MQIFVKTLS-ATLSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQIFVKTL  A+L L+VSP+T++ AVKAAVE  EF+P  + RL  G  Q  +    L ++GI +ADTLTLLL V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSG--CLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: A0A0H5RDB8_9EUKA (60S ribosomal protein L41 (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RDB8_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 3.440e-16
Identity = 62/102 (60.78%), Postives = 74/102 (72.55%), Query Frame = 0 
Query:    1 MQIFVKTLS-ATLSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQIFV+TLS A L L V+   ++ +VK  VED EFI     RL+C G Q ++  L   + G+ +ADTL +LL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   25 MQIFVETLSGAPLKLSVASDASVASVKQMVEDYEFI--SGFRLVCAGKQLESGSLA--DYGVAEADTLKMLLFVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 122
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: V9EKG6_PHYPR (60S ribosomal protein L41 n=3 Tax=Phytophthora TaxID=4783 RepID=V9EKG6_PHYPR)

HSP 1 Score: 73.9 bits (180), Expect = 4.250e-15
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 0 
Query:    1 MQIFVKTLSAT-LSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQ+FV+TLS + L+L V+   ++ +VK AVED E+I     RL+C G Q  +  L   +  + + DTL +LL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYI--QNFRLVCAGKQLTSGSLA--DYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: D0NRK6_PHYIT (60S ribosomal protein L41 n=7 Tax=Peronosporaceae TaxID=4777 RepID=D0NRK6_PHYIT)

HSP 1 Score: 73.9 bits (180), Expect = 5.370e-15
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 0 
Query:    1 MQIFVKTLSAT-LSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQ+FV+TLS + L+L V+   ++ +VK AVED E+I     RL+C G Q  +  L   +  + + DTL +LL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   10 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYI--QNFRLVCAGKQLTSGSLA--DYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 107
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: W2KP00_PHYPR (60S ribosomal protein L41 (Fragment) n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KP00_PHYPR)

HSP 1 Score: 73.9 bits (180), Expect = 1.820e-14
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 0 
Query:    1 MQIFVKTLSAT-LSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQ+FV+TLS + L+L V+   ++ +VK AVED E+I     RL+C G Q  +  L   +  + + DTL +LL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   61 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYI--QNFRLVCAGKQLTSGSLA--DYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 158
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: A0A6A4FFT9_9STRA (60S ribosomal protein L41 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FFT9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.070e-14
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 0 
Query:    1 MQIFVKTLSAT-LSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQ+FV+TLS + L+L V+   ++ +VK AVED E+IP    RL+C G Q  +  L   +  + + DTL +LL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  831 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIP--NFRLVCAGKQLTSGSLA--DYAVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 928
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: A0A6G0NVC9_9STRA (60S ribosomal protein L41 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NVC9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.280e-13
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 0 
Query:    1 MQIFVKTLSAT-LSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQ+FV+TLS + L+L V+   ++ +VK AVED E+IP    RL+C G Q  +  L   +  + + DTL +LL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  710 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIP--NFRLVCAGKQLTSGSLA--DYVVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 807
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: A0A8K1CA19_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA19_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 2.780e-13
Identity = 55/102 (53.92%), Postives = 72/102 (70.59%), Query Frame = 0 
Query:    1 MQIFVKTLS-ATLSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQ+FV+TLS A L+L V+   ++ +VK  +E+ EF+     RL+C G Q +   L   + G+ +A TL +L  +NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQLFVETLSGAPLTLSVAADASVASVKQMIENHEFM--SGFRLVCAGKQLETGSLA--DYGVEEAGTLKMLYSLNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98
[Close]
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Match: A0A8J5JFB2_9STRA (60S ribosomal protein L41 (Fragment) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JFB2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.240e-13
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 0 
Query:    1 MQIFVKTLSAT-LSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
            MQ+FV+TLS + L+L V+   ++ +VK AVED E+I     RL+C G Q  +  L   +  + +  TL +LL VNGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   67 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYI--QNFRLVCAGKQLTSGSLA--DYAVGECATLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 164
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFJ6_9STRA2.350e-2770.5960S ribosomal protein L41 n=1 Tax=Tribonema minus ... [more]
D8LE80_ECTSI1.170e-2266.6760S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID... [more]
A0A0H5RDB8_9EUKA3.440e-1660.7860S ribosomal protein L41 (Fragment) n=1 Tax=Spong... [more]
V9EKG6_PHYPR4.250e-1556.8660S ribosomal protein L41 n=3 Tax=Phytophthora Tax... [more]
D0NRK6_PHYIT5.370e-1556.8660S ribosomal protein L41 n=7 Tax=Peronosporaceae ... [more]
W2KP00_PHYPR1.820e-1456.8660S ribosomal protein L41 (Fragment) n=5 Tax=Phyto... [more]
A0A6A4FFT9_9STRA5.070e-1457.8460S ribosomal protein L41 n=9 Tax=Phytophthora Tax... [more]
A0A6G0NVC9_9STRA1.280e-1357.8460S ribosomal protein L41 n=1 Tax=Phytophthora fra... [more]
A0A8K1CA19_PYTOL2.780e-1353.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J5JFB2_9STRA3.240e-1355.8860S ribosomal protein L41 (Fragment) n=1 Tax=Phyto... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 10..30
score: 36.3
coord: 31..51
score: 45.45
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 1..72
e-value: 1.9E-12
score: 57.3
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 3..73
e-value: 8.0E-11
score: 41.5
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 17.190887
IPR007836Ribosomal protein L41PFAMPF05162Ribosomal_L41coord: 77..99
e-value: 7.4E-8
score: 32.3
NoneNo IPR availableGENE3D3.10.20.90coord: 1..101
e-value: 2.9E-20
score: 73.9
NoneNo IPR availablePANTHERPTHR10666:SF258UBIQUITIN-40S RIBOSOMAL PROTEIN S27Acoord: 1..98
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..98
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_99contigC-australica_Contig_99:62258..62724 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_99.18.1mRNA_C-australica_Contig_99.18.1Chrysoparadoxa australica CS_1217mRNAC-australica_Contig_99 62258..62724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-australica_Contig_99.18.1 ID=prot_C-australica_Contig_99.18.1|Name=mRNA_C-australica_Contig_99.18.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=102bp
MQIFVKTLSATLSLDVSPSTTLGAVKAAVEDSEFIPCDMQRLLCGGVQHQ
ANDLTLEESGINDADTLTLLLRVNGGMRAKWRKKRMRRLRRKRRKMRQRA
R*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin_dom
IPR000626Ubiquitin-like_dom
IPR007836Ribosomal_L41
IPR029071Ubiquitin-like_domsf