mRNA_C-australica_Contig_998.7.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7S2SKC8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKC8_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.570e-22 Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 4 VAKCLA-LSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSDDWYPKYSFDLKEGRDCCAPDSISFDGIKPEMMPWMYHQLY 252 VA CL ++ V PYDTRDA GRERFHPFTP H YRI P D WY KYS DLK+G++CC+ SI+F +KP++M ++ LY Sbjct: 702 VAACLRKVAQVFPYDTRDAHGRERFHPFTPAAHLSYRISPKNPD-WYAKYSSDLKQGKECCSSHSIAFHYVKPQLMRRLHALLY 784
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7S2FZ30_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZ30_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 9.260e-22 Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1 Query: 4 VAKCLA-LSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSDDWYPKYSFDLKEGRDCCAPDSISFDGIKPEMMPWMYHQLY 252 VA+CL ++G++PYDTRDA GRERF PFTP H YR S+DWY KYS DLKEG DCC+ SISF +K +M + LY Sbjct: 42 VARCLKRIAGLVPYDTRDARGRERFLPFTPASHLAYRR---NSNDWYTKYSVDLKEGLDCCSEYSISFHYVKGSLMNGIDTLLY 122
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: D7G568_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G568_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 2.060e-21 Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1 Query: 4 VAKCLALSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSD-DWYPKYSFDLKEGRDCCAPDSISFDGIKPEMMPWMYHQLY 252 VA CL GV+ +DTRD GRERFHPFTPG+H YR+P + DWY YS DLK GR+CC+ S+SF + +M +YH +Y Sbjct: 295 VAACLRQHGVVAHDTRDGLGRERFHPFTPGQHLMYRVPKTNPEKDWYVDYSIDLKIGRECCSRYSLSFHYVDENLMRRLYHLVY 378
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7S2CVB8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVB8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 5.150e-21 Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 4 VAKCLALSGVLPYDTRDAWGRERFHPFTPGEHFDYRIP----PPGSD-DWYPKYS--FDLKEGRDCCAPDSISFDGIKPEMMPWMYHQLY 252 VA CL ++GV+PYDTRD+ G ER+HPFTP H +R P P GS DWY Y+ + LK G +CC+P S++F +KP++MP + L+ Sbjct: 16 VAHCLKVNGVVPYDTRDSAGGERYHPFTPANHLGWRPPAKRKPDGSSPDWYENYNQPWGLKLGLECCSPQSVAFHYVKPDLMPHLNALLF 105
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A1E7FLC2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLC2_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 6.630e-21 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 4 VAKCLALSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSDDWYPKYSFDLKEGRDCCAPDSISFDGIKPEMMPWMYHQLY 252 VAK L +LPYDT+D G ER+ PF PG H+ YR+P S DWY KYS ++KEG D CAP S++F +K EMM ++ Y Sbjct: 187 VAKLLKKEDILPYDTKDDSGGERYMPFLPGHHYSYRLPSDPSKDWYAKYSINIKEGLDHCAPQSVAFHYVKGEMMKRLFALAY 269
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7S0FPS4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FPS4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.470e-19 Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 4 VAKCLALSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSDDWYPKYSFDLKEGRDCCAPDSISFDGIKPEMMPWMYHQLY 252 VA+CL SGVLPYDT+D +G ER+ PF PG H YR P ++DWY D K G D C+ S++F IKP +M M+ LY Sbjct: 117 VARCLRKSGVLPYDTKDEYGAERYMPFQPGHHLTYRPPEDANEDWYALDCIDCKWGLDHCSKQSVAFHYIKPPLMSRMHAILY 199
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7S2EAC8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAC8_TRICV) HSP 1 Score: 90.1 bits (222), Expect = 1.570e-19 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 4 VAKCLALSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSDDWYPKYSFDLKEGRDCCAPDSISFDGIKPEMMPWMYHQLY 252 VA+CL GV+PYDT+D G ER++PF PG H+ YR P DDWY KYS D+K G D CA S++F + P+ M M+ LY Sbjct: 279 VARCLRKYGVVPYDTKDEAGGERYNPFKPGHHYTYRPPANVEDDWYAKYSIDVKWGVDHCAARSVAFHYVDPDFMRRMHAILY 361
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7S2EMN1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EMN1_TRICV) HSP 1 Score: 88.6 bits (218), Expect = 8.360e-19 Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1 Query: 4 VAKCLALSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSDDWYPKYS--FDLKEGRDCCAPDSISFDGIK-PEMMPWMYHQLY 252 +A+CL+ G+ DTRD GRERFHPF PG+H+ ++ P P + DWY Y+ + +K G+DCCAPDS+SF +K P M+ +Y LY Sbjct: 332 IAQCLSSLGIGLTDTRDKDGRERFHPFPPGKHYTWKPPGPKASDWYESYNKEWGIKLGKDCCAPDSVSFHYLKKPAMVRHIYSLLY 417
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7S3STW5_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3STW5_EMIHU) HSP 1 Score: 87.4 bits (215), Expect = 1.820e-18 Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1 Query: 4 VAKCLALS-GVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSD-DWYPKYS--FDLKEGRDCCAPDSISFDGIK-PEMMPWMYHQLY 252 VA+CL + GV DTRDA GRERFHPF+PG H+++R P PG DWY +Y+ + +K GR+CCAPDS+SF IK P M+ ++ LY Sbjct: 235 VAQCLRKALGVNISDTRDAQGRERFHPFSPGTHYNWRPPKPGKPADWYEEYNREWGIKYGRECCAPDSVSFHYIKKPAMVRHLHALLY 322
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Match: A0A7R9U2Z9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2Z9_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.750e-18 Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1 Query: 4 VAKCLA-LSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSD-DWYPKYS-FDLKEGRDCCAPDSISFDGIK-PEMMPWMYHQLY 252 +A+CL +G+LPYDTRD GRERFHPF P HF ++ PG + DWY KYS + + G CCAPDS+SF +K P M+ +Y LY Sbjct: 303 MARCLRDTAGILPYDTRDEQGRERFHPFAPSPHFYWKPAKPGQEKDWYEKYSVWGIGLGAKCCAPDSVSFHYLKRPAMVRHLYSLLY 389 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_998.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_998.7.1 >prot_C-australica_Contig_998.7.1 ID=prot_C-australica_Contig_998.7.1|Name=mRNA_C-australica_Contig_998.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=84bp QVAKCLALSGVLPYDTRDAWGRERFHPFTPGEHFDYRIPPPGSDDWYPKYback to top mRNA from alignment at C-australica_Contig_998:16859..17328- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_998.7.1 ID=mRNA_C-australica_Contig_998.7.1|Name=mRNA_C-australica_Contig_998.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=470bp|location=Sequence derived from alignment at C-australica_Contig_998:16859..17328- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_998:16859..17328- >mRNA_C-australica_Contig_998.7.1 ID=mRNA_C-australica_Contig_998.7.1|Name=mRNA_C-australica_Contig_998.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=252bp|location=Sequence derived from alignment at C-australica_Contig_998:16859..17328- (Chrysoparadoxa australica CS_1217)back to top |