mRNA_C-australica_Contig_9968.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Match: A0A222E4S1_9RHOB (Uncharacterized protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E4S1_9RHOB) HSP 1 Score: 143 bits (360), Expect = 2.550e-43 Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 1 Query: 1 MSGYEHLEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWAREVLEAEHEDDAEDGFDNMPL 216 MSGYEHLEARIDSLRKEIST+KGKAREDLMEHLDQAVLGLEN+GGTAPAWAREVLEAEHEDDAEDGFDNMPL Sbjct: 1 MSGYEHLEARIDSLRKEISTTKGKAREDLMEHLDQAVLGLENIGGTAPAWAREVLEAEHEDDAEDGFDNMPL 72
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Match: A0A239KGM0_9RHOB (Uncharacterized protein n=1 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239KGM0_9RHOB) HSP 1 Score: 133 bits (335), Expect = 1.670e-39 Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 1 Query: 1 MSGYEHLEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWAREVLEAEHEDDAEDGFDNMPL 216 MSGYEHLEARIDSLRKEIS S GKAREDLMEHLDQAVLGLE+VGGTAPAWAREVL+A HED+AEDGFDNMPL Sbjct: 1 MSGYEHLEARIDSLRKEISASNGKAREDLMEHLDQAVLGLESVGGTAPAWAREVLQAMHEDEAEDGFDNMPL 72
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Match: A0A0B3RUA1_9RHOB (Uncharacterized protein n=2 Tax=Mameliella TaxID=1434019 RepID=A0A0B3RUA1_9RHOB) HSP 1 Score: 100 bits (250), Expect = 1.470e-26 Identity = 46/66 (69.70%), Postives = 60/66 (90.91%), Query Frame = 1 Query: 19 LEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWAREVLEAEHEDDAEDGFDNMPL 216 LEAR++SLR+E++ ++G+AR+DLMEHL+QAVLGLE VG PAWARE++EA HED+AEDGFDNMP+ Sbjct: 5 LEARLESLREELAAAQGEARDDLMEHLEQAVLGLEGVGAEIPAWAREMVEAHHEDEAEDGFDNMPV 70
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Match: UPI001C93B938 (hypothetical protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C93B938) HSP 1 Score: 88.6 bits (218), Expect = 1.120e-21 Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 19 LEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWAREVLEAEHEDDAEDGFDNMPL 216 L AR+ SLR E+ T+ G AR +L++HL+QAVLGL+ VG PAWARE++EA H+D+ EDGFDNMPL Sbjct: 5 LHARLVSLRHELETASGDARTELLDHLEQAVLGLDGVGEEVPAWAREMVEAHHDDEVEDGFDNMPL 70
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Match: A0A238L4L4_9RHOB (Uncharacterized protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L4L4_9RHOB) HSP 1 Score: 84.7 bits (208), Expect = 3.730e-20 Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1 Query: 13 EHLEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWAREVLEAEHEDDAEDGFDNMPL 216 E L+AR++ LRKEI+ ++G R +L+EHL+QAV GLE VG PAWARE++E HE D EDGFDNMP+ Sbjct: 3 EQLKARLEVLRKEIAGTRGDTRLELLEHLEQAVHGLEGVGEEIPAWAREMVEKAHEADVEDGFDNMPV 70
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Match: A0A0P1GKQ8_9RHOB (Uncharacterized protein n=1 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GKQ8_9RHOB) HSP 1 Score: 63.9 bits (154), Expect = 6.100e-12 Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 Query: 19 LEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWAREVLEAEHEDDAEDGFDNMPL 216 LE RI+ L ++I + RE+L++HL+QAVL LE+ G AP WA++ L A + D ED FDNMPL Sbjct: 4 LEERINDLHEQILAAADTQREELLDHLEQAVLTLESKGLPAPHWAKDFLAARIDRDVEDQFDNMPL 69
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Match: A0A238JFT3_9RHOB (Uncharacterized protein n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238JFT3_9RHOB) HSP 1 Score: 58.9 bits (141), Expect = 5.930e-10 Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1 Query: 13 EHLEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWAREVLEAEHEDDAEDGFDNMPL 216 E L+ R+D L +++ + G RE+L++HL+Q VL LE+ P WA+ ++ + ++ ED FDNMP+ Sbjct: 3 EDLKTRLDELHRDLEVANGDQREELLDHLEQVVLALEDKDVDIPGWAKALMASRVDEAVEDMFDNMPV 70 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9968.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9968.1.1 >prot_C-australica_Contig_9968.1.1 ID=prot_C-australica_Contig_9968.1.1|Name=mRNA_C-australica_Contig_9968.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=73bp MSGYEHLEARIDSLRKEISTSKGKAREDLMEHLDQAVLGLENVGGTAPAWback to top mRNA from alignment at C-australica_Contig_9968:506..724- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9968.1.1 ID=mRNA_C-australica_Contig_9968.1.1|Name=mRNA_C-australica_Contig_9968.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=219bp|location=Sequence derived from alignment at C-australica_Contig_9968:506..724- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9968:506..724- >mRNA_C-australica_Contig_9968.1.1 ID=mRNA_C-australica_Contig_9968.1.1|Name=mRNA_C-australica_Contig_9968.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=219bp|location=Sequence derived from alignment at C-australica_Contig_9968:506..724- (Chrysoparadoxa australica CS_1217)back to top |