mRNA_C-australica_Contig_996.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: A0A836C894_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C894_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.010e-16 Identity = 135/442 (30.54%), Postives = 190/442 (42.99%), Query Frame = 1 Query: 88 ARLELIEPATSSYVPETIHL-VDDRTIIGRSKSKSDVVLDLDISRT--------QTNTISRQHAE--FTRETRNGRCVFVVHDLKSTNGVFVNDVKIEEEELQDLDLVQFGGAAGVPTGTSFSTTVGGRGDQVHKFAQYRFKLVGE-------------NGQEAESSRKRKRMNEAKTAATRAASS---------PGPYSSLDAAVAEVLESKTKRKLCPSSPSAV--LPDNVPALVEEMERKDGRICTLHRLNGQLQEELHRAKQEKIEARNKLEWQSDERERLQKEVRMLQGYKAGLGKVMADSLSAKRASGSQQSTTSNQAIQTEEATAQESNQAVVAKN--------KNLFADVSCSICHDILLEAAILPCSHGYCSSCWGA---SSASACLICEAECQDV--KPVHSMHLDNAIAILVAELGGKELQKKWERRLQRA 1269
A LEL+ S P+ I L R ++GR+ + SDVVL+ ++ T N ISR HAE F + + R FV DL S NGVFVND+K+ EL D D+VQ GGAA +P G F G R QYRF + NG + RKR M+ +++ SS +SS D E + +K +P + LP PA+ ++ E + QL EL AK ++ L ++D R R + + + K+ D S Q Q + A L A+V+C +C + LL+AA+LPCSH C +CW A + ++AC +C + + SMHLDN IA+LVAELGG E Q++ E R Q A
Sbjct: 14 AVLELVSQGLSQN-PQRIELGAKTRIVLGRAWT-SDVVLN--VANTGPDAEGPPSANIISRSHAEICFIVDEQQRRRWFV-KDLNSVNGVFVNDIKVHSNELFDGDIVQLGGAAMMPVGARF---FGNRAA-----IQYRFSTIAAPPXXXXXXXXXXANG----AKRKRAPMSGSQSPEVTGHSSLHELSASRRKTSHSSSDGLPWEPVGAKEADTGDDGAPGSTEPLPQATPAVTQQSEAQQ------RAREQQLAMELA-AKTAEVAQLQALVAEADARARSAQTAQQNAEAAFTMMKLAGDRASPPPPKQPQLRDAQVQTAVCDSAXXXXXXXXXXXXXXXLKHRLASQLLAEVACCLCEETLLDAALLPCSHAVCGACWTAHCDAHSTACPVCTRKFHSAERRARRSMHLDNVIALLVAELGGAEAQRRMEERAQAA 431
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 3.670e-16 Identity = 60/137 (43.80%), Postives = 80/137 (58.39%), Query Frame = 1 Query: 88 ARLELIEPATSSYVPETIHLVDDRTIIGRSKSKSDVVLDLDISRTQTNTISRQHAE-FTRETRNGRCVFVVHDLKSTNGVFVNDVKIEEEELQDLDLVQFGGAAGVPTGTSFSTTVGGRGDQVHKFAQYRF--KLVG 489
A+L L+ VPE I L + T++GRS DV LD T TISR+HAE F + + G + + DL STNGVFVN+ K++E+ L+ D+VQFGGAA +P GT F GG G ++ +YRF KL G
Sbjct: 6 AKLVLVASTEDYNVPEIIQLSRESTVLGRSSKTCDVTLDA----APTKTISRKHAEIFCGKGKRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRF----GGTGSRI----RYRFEHKLAG 130
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.910e-12 Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 1 Query: 154 DRTIIGRSKSKSDVVLDLDISRTQTNTISRQHAE-FTRETRNGRCVFVVHDLKSTNGVFVNDVKIEEEELQDLDLVQFGGAAGVPTGTSFSTTVGGRGDQV 453
+ T++GRS DV LD T TISR+HAE F R G + + DL STNGVFVN+ K++E+ L+ D+VQFGGAA +P GT F GG G ++
Sbjct: 43 ESTVLGRSSRTCDVTLDA----APTKTISRKHAEIFCGNGRRGPKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRF----GGTGSRI 135
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: A0A7S2TQR2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQR2_9EUKA) HSP 1 Score: 67.8 bits (164), Expect = 9.220e-9 Identity = 45/109 (41.28%), Postives = 69/109 (63.30%), Query Frame = 1 Query: 163 IIGRSKSKSDVVLDLDISRTQTNTISRQHAEFTRETRNGRCVFVVHDLKSTNGVFVNDVKIEEEELQDLDLVQFGGAAGVPTGTSFSTTVGGRGDQVHKFAQYRFKLVG 489
IIGR ++D +LD S+ N ISR+HA E +NG+ +V+ D +STNGVFVN+++++++EL D D++ FGG +GVP VGG +Q+ +RF+L G
Sbjct: 47 IIGRDP-EADYILD---SKRFKNMISRRHAAIKLE-KNGK--WVILDTRSTNGVFVNNIRVQKKELADNDIIVFGGGSGVP--------VGGSREQLDSEFLFRFELHG 140
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: A0A7J6MBZ4_PEROL (FHA domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MBZ4_PEROL) HSP 1 Score: 58.2 bits (139), Expect = 8.720e-6 Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1 Query: 85 EARLELIEPATSSY-VPETIHLVDDRTIIGRSKSKSDVVLDLDISRTQTNTISRQHAEFTRETRNGRCVFVVHDLKSTNGVFVNDVKI-EEEELQDLDLVQFG 387
EA L L+ + VP +HL +R IGR+ +SDV LD S T+SR+HA R G C FV+ DL+S NGV+VN + EE+EL D+V FG
Sbjct: 139 EAHLVLLSSCRPTMDVPHVVHLGRERCFIGRAV-ESDVYLD---SVLYPRTLSREHAVIERR---GPCDFVLKDLRSVNGVYVNGKAVREEQELAPGDVVLFG 234
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: A0A7J6LZB3_PEROL (FHA domain-containing protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LZB3_PEROL) HSP 1 Score: 58.2 bits (139), Expect = 2.040e-5 Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1 Query: 85 EARLELIEPATSSY-VPETIHLVDDRTIIGRSKSKSDVVLDLDISRTQTNTISRQHAEFTRETRNGRCVFVVHDLKSTNGVFVNDVKI-EEEELQDLDLVQFG 387
EA L L+ + VP +HL +R IGR+ +SDV LD S T+SR+HA R G C FV+ DL+S NGV+VN + EE+EL D+V FG
Sbjct: 265 EAHLVLLSSCRPTMDVPHVVHLGRERCFIGRAV-ESDVYLD---SVLYPRTLSREHAVIERR---GPCDFVLKDLRSVNGVYVNGKAVREEQELAPGDVVLFG 360
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: A0A7J6RTD3_PEROL (FHA domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RTD3_PEROL) HSP 1 Score: 57.0 bits (136), Expect = 4.740e-5 Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 1 Query: 85 EARLELIEPATSSY-VPETIHLVDDRTIIGRSKSKSDVVLDLDISRTQTNTISRQHAEFTRETRNGRCVFVVHDLKSTNGVFVNDVKI-EEEELQDLDLVQFG 387
EA L L+ + VP +HL +R IGR+ +SDV LD S T+SR+HA R G C FV+ DL+S NGV+VN + +E+EL D+V FG
Sbjct: 265 EAHLVLLSSCRPTMDVPHVVHLGRERCFIGRAV-ESDVYLD---SVLYPRTLSREHAVIERR---GPCDFVLKDLRSVNGVYVNGKAVRDEQELAPGDVVLFG 360
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Match: A0A7J6PEY5_PEROL (FHA domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PEY5_PEROL) HSP 1 Score: 57.4 bits (137), Expect = 6.030e-5 Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 127 VPETIHLVDDRTIIGRSKSKSDVVLDLDISRTQTNTISRQHAEFTRETRNGRCVFVVHDLKSTNGVFVNDVKI-EEEELQDLDLVQFG 387
VP +HL +R IGR+ +SDV LD S T+SR+HA R G C FV+ DL+S NGV+VN + EE+EL D+V FG
Sbjct: 3 VPHVVHLGRERCFIGRAV-ESDVYLD---SVLYPRTLSREHAVIERR---GPCDFVLKDLRSVNGVYVNGKAVREEQELAPGDVVLFG 83 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_996.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_996.2.1 >prot_C-australica_Contig_996.2.1 ID=prot_C-australica_Contig_996.2.1|Name=mRNA_C-australica_Contig_996.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=498bp LFPFRISASRINVVTHHPSTLRLNPPMLEARLELIEPATSSYVPETIHLVback to top mRNA from alignment at C-australica_Contig_996:2876..5561- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_996.2.1 ID=mRNA_C-australica_Contig_996.2.1|Name=mRNA_C-australica_Contig_996.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2686bp|location=Sequence derived from alignment at C-australica_Contig_996:2876..5561- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_996:2876..5561- >mRNA_C-australica_Contig_996.2.1 ID=mRNA_C-australica_Contig_996.2.1|Name=mRNA_C-australica_Contig_996.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1494bp|location=Sequence derived from alignment at C-australica_Contig_996:2876..5561- (Chrysoparadoxa australica CS_1217)back to top |