mRNA_C-australica_Contig_995.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_995.3.1
Unique NamemRNA_C-australica_Contig_995.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: D8LLC1_ECTSI (MEKK and related serine/threonine protein kinases amardillo repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC1_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.260e-32
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 1
Query:  214 NGTVT----YQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMESSLASMCKKFG 504
            NGTV      QIGQEIGRGGFG VFQALNT TGDFVA+KR+   ++  D+ A IK EIDLLKKLNH NIV+YIDT+ T  +LHIVLEIMESSL++MCKKFG
Sbjct:   41 NGTVPPVGEQQIGQEIGRGGFGVVFQALNTATGDFVAVKRMEMDSVKLDAGASIKGEIDLLKKLNHPNIVQYIDTIQTSEHLHIVLEIMESSLSAMCKKFG 141          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A4D9CQQ2_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQQ2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.780e-32
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  196 ATTRITNGTVTYQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            A TRI N   TYQ+G EIGRGGFG VFQALN +TGDF+A+KR+    +D   LA I+ EI LL+KL H +IVKY+D + T+ +LHIVLE MES SLAS+CKKFG
Sbjct:  102 APTRIANLNATYQLGAEIGRGGFGAVFQALNIETGDFMAVKRLELREVDSQDLASIETEIFLLRKLQHPHIVKYVDAIRTEHHLHIVLEYMESGSLASVCKKFG 205          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A7S1GCW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCW8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.200e-26
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 1
Query:  229 YQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            YQ+G E+GRGGFGTV++ LNT+TGDFVA+K VA  +L    L  ++LEI LL+ LNH NIVKY+DT+ TD +LHI+LE +E+ SLA   KKFG
Sbjct:   57 YQLGDELGRGGFGTVYKGLNTETGDFVAVKSVALRSLSGAELEPLQLEIQLLRSLNHPNIVKYVDTVRTDDHLHIILEFVENGSLAQTIKKFG 149          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A836C8J4_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.470e-26
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 1
Query:  295 TGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMESSLASMCKKFG 504
            +G+ VA+KRVA H ++ DSLA IK+EIDLLKKLNH NIV+YIDT+ TD++LHI+LEIMESSL++MCKKFG
Sbjct:    1 SGELVAVKRVALHDINGDSLASIKMEIDLLKKLNHANIVQYIDTIQTDTHLHIILEIMESSLSAMCKKFG 70          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A3R7HEP5_9STRA (Protein kinase domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HEP5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.950e-24
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  133 NRQSLSRSGRSDRRASRATLDATTRITNGTVTYQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            N QS   S RS+  +SR+T     ++      YQ+G EIGRGGFG V+ AL+   G  VAIK+V+   +DKD L+ I+ EI+LL+KLNH NIVKY DT+ T  YL+IVLE ME+ SLA   KKFG
Sbjct:  238 NSQSRPNSSRSNISSSRSTKKGEEQVRLVGTHYQLGAEIGRGGFGVVYGALDLRNGRSVAIKQVSLRDIDKDDLSSIESEINLLRKLNHENIVKYRDTIKTQGYLYIVLEYMENGSLAQFMKKFG 362          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A421FD48_9STRA (Protein kinase domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FD48_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.720e-24
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  133 NRQSLSRSGRSDRRASRATLDATTRITNGTVTYQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            N QS   S RS+  +SR+T     ++      YQ+G EIGRGGFG V+ AL+   G  VAIK+V+   +DKD L+ I+ EI+LL+KLNH NIVKY DT+ T  YL+IVLE ME+ SLA   KKFG
Sbjct:  541 NSQSRPNSSRSNISSSRSTKKGEEQVRLVGTHYQLGAEIGRGGFGVVYGALDLRNGRSVAIKQVSLRDIDKDDLSSIESEINLLRKLNHENIVKYRDTIKTQGYLYIVLEYMENGSLAQFMKKFG 665          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: K3X170_GLOUD (Protein kinase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X170_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 4.960e-24
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  229 YQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            YQ+G EIGRGGFG VF AL+   G  +AIK+V+ H +DKD L  I+ EI LLKKLNH NIVKY DT+ T +YL+IVLE ME+ SLA   KKFG
Sbjct:   75 YQLGAEIGRGGFGVVFAALDLRNGRSLAIKQVSLHDIDKDELLSIESEISLLKKLNHENIVKYHDTIRTQTYLYIVLEYMENGSLAQFMKKFG 167          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A0G4FXQ4_VITBC (Protein kinase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FXQ4_VITBC)

HSP 1 Score: 107 bits (267), Expect = 6.730e-24
Identity = 53/93 (56.99%), Postives = 75/93 (80.65%), Query Frame = 1
Query:  229 YQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            YQ+G+ IG+GGFG VF+AL+T TG+FVA+K+V  H L K+ L  +++EI LL++LNH NIVKY D+L+  ++L+IVLE +ES SLAS+ KK+G
Sbjct:    9 YQLGEAIGKGGFGVVFKALDTKTGEFVAVKQVPTHNLSKEKLDSLRMEISLLRRLNHRNIVKYHDSLTDGTFLYIVLEYVESGSLASIIKKYG 101          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A8K1FDH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH2_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 6.730e-24
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  229 YQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            YQ+G EIGRGGFG V+ AL+   G  VAIK+V+   +DKD L  I+ EI LL+KLNH NIVKY DT+ T S+LHIVLE+ME+ SLA   KKFG
Sbjct:   47 YQLGAEIGRGGFGVVYAALDLRNGRSVAIKQVSLQDIDKDELLSIESEISLLRKLNHENIVKYYDTIKTQSHLHIVLELMENGSLAQFMKKFG 139          
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Match: A0A3F2RRY7_9STRA (Protein kinase domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRY7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.220e-23
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  139 QSLSRSGRSDRRASRATLDATTRITNGTVTYQIGQEIGRGGFGTVFQALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTLSTDSYLHIVLEIMES-SLASMCKKFG 504
            QS   S RS+  +SR+T     ++      YQ+G EIGRGGFG V+ AL+   G  VAIK+V+   +DKD L+ I+ EI+LL+KLNH NIVKY DT+ T  YL+IVLE ME+ SLA   KKFG
Sbjct:   30 QSRPNSSRSNMSSSRSTKKGEEQVRLVGTHYQLGAEIGRGGFGVVYGALDLRNGRSVAIKQVSLRDIDKDDLSSIESEINLLRKLNHENIVKYRDTIKTQGYLYIVLEYMENGSLAQFMKKFG 152          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_995.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC1_ECTSI1.260e-3270.30MEKK and related serine/threonine protein kinases ... [more]
A0A4D9CQQ2_9STRA2.780e-3262.50Protein kinase domain-containing protein (Fragment... [more]
A0A7S1GCW8_9STRA2.200e-2660.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A836C8J4_9STRA2.470e-2671.43Kinase-like domain-containing protein (Fragment) n... [more]
A0A3R7HEP5_9STRA2.950e-2452.00Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A421FD48_9STRA4.720e-2452.00Protein kinase domain-containing protein n=2 Tax=P... [more]
K3X170_GLOUD4.960e-2462.37Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A0G4FXQ4_VITBC6.730e-2456.99Protein kinase domain-containing protein n=2 Tax=V... [more]
A0A8K1FDH2_PYTOL6.730e-2461.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RRY7_9STRA1.220e-2352.03Protein kinase domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_995contigC-australica_Contig_995:12620..14064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLC1
Preferred nameCDC15
PFAMsPkinase
Model size504
Max annot lvl2759|Eukaryota
KEGG koko:K06683
KEGG Pathwayko04111,ko04113,ko04392,map04111,map04113,map04392
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.11e-34
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota
EC2.7.11.1
DescriptionMAP kinase kinase kinase activity
Cds size375
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_995.3.1prot_C-australica_Contig_995.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_995 12620..13735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588863.3660016-CDS-C-australica_Contig_995:12619..126471682588863.3660016-CDS-C-australica_Contig_995:12619..12647Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 12620..12647 -
1682588863.3754284-CDS-C-australica_Contig_995:12759..128451682588863.3754284-CDS-C-australica_Contig_995:12759..12845Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 12760..12845 -
1682588863.3832028-CDS-C-australica_Contig_995:12989..130611682588863.3832028-CDS-C-australica_Contig_995:12989..13061Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 12990..13061 -
1682588863.3962667-CDS-C-australica_Contig_995:13298..133851682588863.3962667-CDS-C-australica_Contig_995:13298..13385Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 13299..13385 -
1682588863.403736-CDS-C-australica_Contig_995:13633..137351682588863.403736-CDS-C-australica_Contig_995:13633..13735Chrysoparadoxa australica CS_1217CDSC-australica_Contig_995 13634..13735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588863.411532-UTR-C-australica_Contig_995:13735..137681682588863.411532-UTR-C-australica_Contig_995:13735..13768Chrysoparadoxa australica CS_1217UTRC-australica_Contig_995 13736..13768 -
1682588863.4192636-UTR-C-australica_Contig_995:13968..140641682588863.4192636-UTR-C-australica_Contig_995:13968..14064Chrysoparadoxa australica CS_1217UTRC-australica_Contig_995 13969..14064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_995.3.1

>prot_C-australica_Contig_995.3.1 ID=prot_C-australica_Contig_995.3.1|Name=mRNA_C-australica_Contig_995.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=125bp
MNRQSLSRSGRSDRRASRATLDATTRITNGTVTYQIGQEIGRGGFGTVFQ
ALNTDTGDFVAIKRVAQHTLDKDSLAGIKLEIDLLKKLNHVNIVKYIDTL
STDSYLHIVLEIMESSLASMCKKFG
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mRNA from alignment at C-australica_Contig_995:12620..14064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_995.3.1 ID=mRNA_C-australica_Contig_995.3.1|Name=mRNA_C-australica_Contig_995.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1445bp|location=Sequence derived from alignment at C-australica_Contig_995:12620..14064- (Chrysoparadoxa australica CS_1217)
CGGAGGAAGCTGGGGGAGTGCAAGCAGGGCGCTCATACCAGGAGGAGGAC TCTGAGAGCGCGCCCTCCCTCTACTGAGCCCCTCGTTATCCTCATGGTAG GGGCTGCCTCCCTAATATCCTGCCTGGCCTCTCCCTTGCCTTGCTGCTGC TTAACCTCGGAGCCGCCCTGCCCTCGCACCTTACGCTTCACCTCACAGTC ACCCTAACCCCAACCTCCCTCTAACTCCCCCTAACCTCACCCTTCACCTC ACATCTCCTATTTCACTGACCTGCCATCCTCTCTCCTTCTCCCCAGGATG ACTCCAGCCAGGGGGGGTACTGAGAGAGCATGAATAGGCAATCCCTCTCC CGTTCTGGTAGGTCTGATAGGAGGGCCAGCCGGGCAACTCTTGATGCTAC GACGCGCATCACCAACGGCACTGTCACCTACGTGAGTTGCACATACTTTT TGCTCGATCTGCTCCCAGCTGTTGCTCAATTGAACAGTTGGCTACATGAC ACCACGCCAGCTCAGAAATAACATCTCATCAGCCAGCGCATGCCCCGCTC TGCTCTGGTTTACGTATAGCTATGGACGGTAACTCTTGTATACAAGTACT TGTACGGAGGAAAAATCTGTATATATTTGCCGAGGTGGCTACTTCCTCAT TGCTCTGCACTGCTGCTACCTATCAACAGCAAATTGGGCAAGAGATTGGC AGGGGTGGGTTTGGGACAGTGTTCCAGGCGCTTAATACGGACACTGGTGA CTTTGTGGCCATCAAGGTGACCTATTACTTCCCCATTAAGAGAATGCACA GAAGGCAGACCTCAAACTGTGAGGGCGCAAGGCAGGGGCCTTGAGTGTGG ATCTATGAGAGTAGAGTTGATTTAGCTCTTACGAAAGCCAAAGCAGGCCT GCCACGGCTCGTGGCTGGCAAGCTTTTTGTTGCTTTCAGGAGCGTGGTAC GAGTCAAACTGCACATTTCTTCAAGTAACTTGCTCTTGCTCTTGCTCTCA CAGAGGGTAGCCCAGCACACGCTTGATAAGGACTCACTGGCCGGCATCAA GCTGGAGATTGACCTGTTGAAAAAGGTCTTACAGCACACACCCAAGCCTT ACCCAGCCTGCCTCACTCGAAACTGAAGCCGAATGTTCCATGAGCCTCAG AGCTAGTGATAGAGGATAGCTGAAGCTCTTGGCTCTCTCTCATCCCAAGT TGCTCTCCCGCGTCTTCAGCTGAACCATGTCAACATTGTCAAGTACATCG ACACGCTGTCAACGGACAGCTACCTGCACATTGTGCTGGAGATAATGGAG AGCAGGTCAGAGCTAGCATGCTTATCCACCCTCAGCACTCGAACTGAGCC TTCCCAGTGAGCGTGTTGAGTAGCCAGCCAGTCAAGCTCATGCCTCCACT CCCCTTCCCTTCTTCAGCCTTGCTTCCATGTGCAAAAAGTTTGGC
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Coding sequence (CDS) from alignment at C-australica_Contig_995:12620..14064-

>mRNA_C-australica_Contig_995.3.1 ID=mRNA_C-australica_Contig_995.3.1|Name=mRNA_C-australica_Contig_995.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=375bp|location=Sequence derived from alignment at C-australica_Contig_995:12620..14064- (Chrysoparadoxa australica CS_1217)
ATGAATAGGCAATCCCTCTCCCGTTCTGGTAGGTCTGATAGGAGGGCCAG
CCGGGCAACTCTTGATGCTACGACGCGCATCACCAACGGCACTGTCACCT
ACCAAATTGGGCAAGAGATTGGCAGGGGTGGGTTTGGGACAGTGTTCCAG
GCGCTTAATACGGACACTGGTGACTTTGTGGCCATCAAGAGGGTAGCCCA
GCACACGCTTGATAAGGACTCACTGGCCGGCATCAAGCTGGAGATTGACC
TGTTGAAAAAGCTGAACCATGTCAACATTGTCAAGTACATCGACACGCTG
TCAACGGACAGCTACCTGCACATTGTGCTGGAGATAATGGAGAGCAGCCT
TGCTTCCATGTGCAAAAAGTTTGGC
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