mRNA_C-australica_Contig_995.1.3 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A835ZAQ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ3_9STRA) HSP 1 Score: 270 bits (689), Expect = 5.350e-80 Identity = 179/457 (39.17%), Postives = 258/457 (56.46%), Query Frame = 2 Query: 2 GSKGSGKSTLLRSMFGDEAASGGVLEDEGVAVMEVDSSISMAGDKALSMGAKDVVVSCASSDVIVFNVLQQDLHRA--GALSELMPALEEALALSEDALEEGPKKKELIIVVRDFDGDSSEEAALAGSALATLEGMWESAARPEAATGAKLADYFTVQMEYLPHHTLASSAFSXXXXXXXXXXXXXSPQA-AAGVLERLQKMSALA-GPDVSAPSAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFP-GLDEEFGEHQDDIAEDVMAEFKDLCSGVGGS-----VVGKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPGLGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAFASTNVRADAMFFEFAPTGEEIEGP 1342 GS+G+GK+TL++SMFG ++ D+G+ ++E +SS S+A + +D + A++DV V+NV QDL R+ L+EL ALE LA S E GPK L+ VRDFDG+ + + + + L+ MW+ A RP L D V +LP H+LA+ ++ + A AA VL+ LQ A A G V + S E+ AA V A Q A++ N V LS + GLD EFG H D I ++ + ++ + V+GKKR EL +AM R+A YA Q LL+AAA KFR+ A +R+ P LGK+M A++ +D Y +A LK K + +ER+ L +DLR A ERLQLAKLQG + + +R RPV + HWLLP+PFGTDA +S+L D+ AF+S ++AD+++FEFAP +E+ GP Sbjct: 48 GSQGTGKTTLMKSMFGPAVEQETLIADDGLVLLEAESSCSLASR---AKAVRDAAAALAAADVAVYNVFMQDLQRSVDATLTELQMALEPFLAASAGQPEGGPKP--LVFAVRDFDGEEASQEQVEAAMTEALQRMWQRAVRPGDFAKKSLEDVLDVSFSFLPSHSLAAGEYAHAAAALRTRLAEGAKSATAADVLKTLQAAPAQATGAPVESTSPAELAAALVAKTAAAQALATFKNRVSALSASLADGLDPEFGAHVDIIVDEALDQYSQGVAAXXXXXXXXXVIGKKRGELRAAMLREAHGLYAAQFRLLRAAAADKFRRSPATLRISPTLGKDMDAAMKESDSYMAESAKGLKSKYLPALLDAERRELGSDLRAVAAERLQLAKLQGMSAAKSR---RPVGIALHWLLPEPFGTDASRSVLGAGDEPAFSSERLKADSLWFEFAPL-DEVPGP 495
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: D7FSH8_ECTSI (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH8_ECTSI) HSP 1 Score: 237 bits (604), Expect = 3.830e-67 Identity = 166/493 (33.67%), Postives = 259/493 (52.54%), Query Frame = 2 Query: 2 GSKGSGKSTLLRSMFGDEAASGGVLEDEGVAVMEVDSSISMAGD-KALSMGAKDVVVSCASSDVIVFNVLQQDLHRAGALSELMPALEEALALSEDALEEGPKKKELIIVVRDF-DGDSSEEAALAGSALATLEGMWESAARPEAATGAKLADYFTVQMEYLPHHTLASSAFSXXXXXXXXXXXXXSPQAAAGVLERL-QKMSALAGPDVSAPSAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFPGLDEEFGEHQDDIAEDVMAEFKDLCSGVGGS--VVGKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPGLGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAFASTNVRADAMFFEF-APTGEEIEGPPTV-------RGVYDSHEFSSIQVRKCPYESHDS*LPPSP 1441 G++GSGKSTL+++MFG A++ +A++E SS + + + +GA +VS A SD ++NVL DL R ALS++ PALEE L L ED + + + K ++ VRD DGD +E G L+ +W +A +PE G+ L+D V++ LPHH+ AS + + A + RL Q++S+ AGP + + + A+ + A +C AS+ +LV + F L+ +FGE D + + V+ E+ + GV G+ V+ +K+ EL R+ R+A+Q+ LL+ AA KF + L+ +RV P +GK+M +A++ ADK+F T + + S S RK L ++REFA ERLQL + QG + +PV + FHW LPKPFG AR+S L + D + +A MF E P+ +E+ P + V + S I VR+ HD L +P Sbjct: 67 GAQGSGKSTLMKTMFGQGASN--------LALLEARSSAAFVPETNEVEVGAGQAMVSLAVSDATIYNVLVHDLRRPDALSDVQPALEELLTLYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGE---RLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFKSLVGRMGAGFEELNTDFGELCDGVIDTVLQEYDEAVDGVSGASGVLSRKKAELKRHCLRELGLRHADQVDLLRTAARAKFDETLSGLRVSPDVGKQMMDAIQEADKFFAKTVRGMNSRHGSWPSNSVRKELRDEMREFASERLQLVQAQGGMVRMQK--RKPVGMAFHWFLPKPFGQQARESRLDLTDPMRYTYKANQASPMFMELLCPSAQEVSLPSEGIEETEIHKDVKQLQKVSQILVRR-----HDERLTKAP 541
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: M2XGH2_GALSU (GTP-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XGH2_GALSU) HSP 1 Score: 114 bits (286), Expect = 2.390e-23 Identity = 115/407 (28.26%), Postives = 186/407 (45.70%), Query Frame = 2 Query: 149 GAKDVVVSCASSDVIVFNVLQQDLHR--AGALSELMPALEEALALSEDALEEGPKKKELIIVVRDFDGDSSEEAALAGSALATLEGMWESAARPEAATGAK-LADYFTVQMEYLPHHTLASSAF---------------SXXXXXXXXXXXXXSPQAAAG-----VLERLQKMSALAGPDVSAPSAKEMKAAAVGGKAVEQCFASYTNLVLGLS-KAFPG-LDEEFGEHQDDIAEDVMAEFKDLCSGVGGS-VVGKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPGLGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVD-DKAAFASTNVR 1288 G V ++ A SDVIV +V +D+ R A L A+E+ + L + KK L++V RD + + + L + + + AR E +TG K ++D F ++ PH+ +F S +P V ERL S L V+AP EM A EQ +Y + V K G + + FG+ ++ +++A + D + G+ +KRK L+ + D Y++ L LK + FR+ L+++++ + K+++ A++ ADKYF S A LKCK SERK L++ +RE A ERLQLA++QGA R+ P++L+ ++L P PFG D+R + +K F N R Sbjct: 113 GESSVRLATAVSDVIVLHVHSRDVGRLEATGLPLFKNAIEDVMKLRSLGVLSSHSKKLLVVVFRDVESEETNREDLITAFIEDCNSLL--GAREEGSTGIKKISDLFDIEFALFPHYVFHRQSFERTATSLRERFREPTSDDYFFIEDRYSNPTPAMEISLHITQVWERLGIESYL----VTAPE-YEMNATFHCDNCFEQALTTYFSRVREWKRKTEEGRIIQNFGKESTELRNEILALYDDEAAQYKGTKAFERKRKSLLERVQLDLYTMYSKLLNKLKEVSFDIFRESLSHIQISDNVEKDVNKAIKAADKYFCSRAELLKCKGTSWQFDSERKELLSVMRENATERLQLARIQGAYVPPARM---PISLSLNYLHPNPFGKDSRYEDFQAEKEKVKFDPGNTR 509
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A7S2FW41_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FW41_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.310e-20 Identity = 104/351 (29.63%), Postives = 163/351 (46.44%), Query Frame = 2 Query: 236 LSELMPALEEALALSEDA-LEEGPKKKELIIVVRDFDGDSSEEAALAGSALATLEGMWESAARPEAATGAKLADYFTVQMEYLPHHTLASSAFSXXXXXXXXXXXXXSPQAAAGVLERLQKMSALAGPDVS-APSAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFPGLD-EEFGEHQDDIAEDVMAEFKDLCSGVGGSVV-GKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPG-LGKEMSNALEVADKYFRSTAPALKCKLVQDSSQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGT-DARQSILSVDDKAAF 1270 LS+L +E LA + D LEEG K + + D + +SSE AL S L MW +A +P A L+D+ V + LP + A + S A+AGV RL + A G AP+ +M++ A+E F ++ + + LS A +D EEFG DD + + F + G+ K KEL+S + + Y +LA L A + ++ + + G L K+M ++ AD +F + A + C+ S+ ER+A+++ +R F ERLQ+ L G R +PVA++ HWL+ P DA Q LS DD+ + Sbjct: 76 LSDLQTKVEALLARTADGTLEEGATK--VFVACSDCEAESSEVEALVRSELVA---MWANAVKPAQYEAAPLSDFVDVDVRVLPDSRNPTCAAAVDGLK--------SALASAGVSNRLDGVVASGGGSGGGAPAQADMESLFACHGAMEGAFQTFVDQLPALSAALAEIDVEEFGAACDDALDAAVQHFNGASAAFDGTASKAAKGKELVSKVHGELRPLYLAKLAELNELANSRLKKSFRKLSITDGSLLKDMEAGVKDADAFFSANAKKMVCRGAGWSANQERRAMVSKMRAFVKERLQVLHLGGKYVPGMR--RKPVAVSLHWLVRHPLQLLDAIQDSLSFDDEMEY 411
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A8J5XDG1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDG1_DIALT) HSP 1 Score: 102 bits (253), Expect = 3.360e-19 Identity = 146/472 (30.93%), Postives = 209/472 (44.28%), Query Frame = 2 Query: 2 GSKGSGKSTLLRSMFG-----DEAASGGVL-EDEGVAVMEVDSSISMAGDKALSMGAKDVVVSCASSDVIVFNV-----LQQDLHRAGALSELMPALEEALALSEDALEEGPKKKELIIVVRDFDGDSSEEA-ALAGSALATLEGMWESAARPEAATGA---KLADYFTVQMEYLPHHTLASSAF----SXXXXXXXXXXXXXSPQAAAGVLERLQKMSALAGPDVSAP--SAKEMKAAAVGGKAVEQCFASYTNLVLGLSKAFPGLDEEFGEHQDDIAED-------VMAEFKDLCSGVGGSVV-GKKRKELMSAMARDASARYAEQLALLKAAATGKFRQELANVRVGPG-LGKEMSNALEVADKYFRSTAPALKCKLVQD--SSQSERKALITDLREFADERLQLAKLQGA-TQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAF---ASTNVRADAMFFE 1309 G + SGK L+ + G +E VL EDE +AV+ GD A D V+ A S V+V L + G LSEL PA+E L +S P+K+ LI+V+R+++ D+S A AL +A LE MW AA P A +G LAD VQ+ LP S+AF S XXXXXXXXXX AA +L L S LA V SA E+ AA +A F + + L D+ E +A++ + + D GS V K+R L SA+ D + L L + A + AN+ G G L ++ A++ FR A L + S E K L +L++ + E ++ A+LQG + R+ P ++ HWL P PFG D R LS D+ ++ A + +R + M F+ Sbjct: 50 GPRKSGKGVLVGKLLGAPVEDEEGELECVLSEDEKLAVLNSAGFGERPGDAPAFDEAADTAVAVALSQVVVLTAFFREFLAEPADAVGRLSELRPAMELLLRMSRQPGASPPRKRSLILVLREYEPDASASAQALRERFVALLEEMW--AALPAARSGGGAPALADLLDVQVAPLPSPKADSAAFTAAASELRXXXXXXXXXXXXXPAAQLLFSLAAASKLASSSVGPGFVSADELAAALACARAASAAFDEFASATATLHARAASRDDPLREPPAALADECSKALGAALRAYDDATVAHAGSDVRAKRRATLRSAILADLRPVHTHALQLARIGAVIDLSKRAANLTAGEGNLHADLQAAVDDVTASFREKAAMLTMREAAGAWSCGLEEKMLQQELQQMSAEMVRRAQLQGLYAPPAGRV---PTGVSLHWLHPNPFGKDLRNDQLSATDRLSYSQKAKSLLRLEPMRFD 516
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Match: A0A6H5JTE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE5_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 9.040e-11 Identity = 49/134 (36.57%), Postives = 65/134 (48.51%), Query Frame = 2 Query: 1064 SQSERKALITDLREFADERLQLAKLQGATQSSNRLFSRPVALNFHWLLPKPFGTDARQSILSVDDKAAFASTNVRADAMFFEF-APTGEEIEGPPTVRGVYDSHE-------FSSIQVRKCPYESHDS*LPPSP 1441 S S RK L ++REFA ERLQL + QG + +PV + FHW LPKPFG AR+S L + D + +A MF E P +E+E P + H+ S I VR+ HD L +P Sbjct: 10 SNSVRKELRDEMREFASERLQLVQAQGGMVRMQK--RKPVGMAFHWFLPKPFGQQARESRLDLTDPMRYTYKANQASPMFMELLCPPAQEVEFPSEGTEETEIHKDVKQLQKVSQILVRR-----HDERLTKAP 136 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_995.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_995.1.3 >prot_C-australica_Contig_995.1.3 ID=prot_C-australica_Contig_995.1.3|Name=mRNA_C-australica_Contig_995.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=462bp MFGDEAASGGVLEDEGVAVMEVDSSISMAGDKALSMGAKDVVVSCASSDVback to top mRNA from alignment at C-australica_Contig_995:35..3150+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_995.1.3 ID=mRNA_C-australica_Contig_995.1.3|Name=mRNA_C-australica_Contig_995.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3116bp|location=Sequence derived from alignment at C-australica_Contig_995:35..3150+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_995:35..3150+ >mRNA_C-australica_Contig_995.1.3 ID=mRNA_C-australica_Contig_995.1.3|Name=mRNA_C-australica_Contig_995.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1386bp|location=Sequence derived from alignment at C-australica_Contig_995:35..3150+ (Chrysoparadoxa australica CS_1217)back to top |