mRNA_C-australica_Contig_9943.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A222DZ62_9RHOB (Homoserine/homoserine lactone efflux protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DZ62_9RHOB) HSP 1 Score: 280 bits (716), Expect = 3.410e-92 Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 3 Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFIL VLAFVPQFIDPT PVLPQFLI Sbjct: 1 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILFVLAFVPQFIDPTLPVLPQFLI 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A222DZ00_9RHOB (Type-4 uracil-DNA glycosylase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DZ00_9RHOB) HSP 1 Score: 268 bits (684), Expect = 1.890e-86 Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 1 Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT 402 QGKPFVG+AGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT Sbjct: 130 QGKPFVGQAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTLT 263
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: UPI001C47A647 (LysE family translocator n=1 Tax=Roseobacteraceae TaxID=2854170 RepID=UPI001C47A647) HSP 1 Score: 263 bits (672), Expect = 1.630e-85 Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 3 Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845 MIVDPILLLAF+P GLALN+TPGPDMMFCLAQGLRGGARCGWAAS GVALGGMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAP + P++A +QGFVVNITNPKFIL VLAFVPQFIDP PVLPQFLI Sbjct: 1 MIVDPILLLAFVPAGLALNLTPGPDMMFCLAQGLRGGARCGWAASTGVALGGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPALTPSRAMRQGFVVNITNPKFILFVLAFVPQFIDPALPVLPQFLI 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A0B3S209_9RHOB (Threonine transporter RhtB n=4 Tax=Mameliella TaxID=1434019 RepID=A0A0B3S209_9RHOB) HSP 1 Score: 256 bits (653), Expect = 1.240e-82 Identity = 131/148 (88.51%), Postives = 138/148 (93.24%), Query Frame = 3 Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845 MIVDPILLLAFIP GLALNVTPGPDMMFCLAQGLRGGARCGWAAS+GVALGGM+HVLLAGLGLGA VAALPGAFDVIRW GAAYLAWIAWKTLRTPIAGSDAP + PA+A +QGFVVNITNPK+IL VLAFVPQFIDP VLPQFL+ Sbjct: 1 MIVDPILLLAFIPAGLALNVTPGPDMMFCLAQGLRGGARCGWAASSGVALGGMLHVLLAGLGLGALVAALPGAFDVIRWAGAAYLAWIAWKTLRTPIAGSDAPPLAPAQAFRQGFVVNITNPKYILFVLAFVPQFIDPAKAVLPQFLV 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A239BL69_9RHOB (Type-4 uracil-DNA glycosylase n=2 Tax=Antarctobacter heliothermus TaxID=74033 RepID=A0A239BL69_9RHOB) HSP 1 Score: 248 bits (634), Expect = 5.800e-79 Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1 Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399 QGKPFVGRAGQLLDRMLAAV LSR D+VYITNVLPWRPPQNRDPKPDEIAML+PFLQRHIALVNPD+LVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTP AKREAW D LAL+A+LR L Sbjct: 124 QGKPFVGRAGQLLDRMLAAVSLSRADTVYITNVLPWRPPQNRDPKPDEIAMLMPFLQRHIALVNPDLLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPHAKREAWGDWLALKARLRAL 256
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: UPI000EF43D56 (LysE family translocator n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF43D56) HSP 1 Score: 241 bits (615), Expect = 7.180e-77 Identity = 120/148 (81.08%), Postives = 132/148 (89.19%), Query Frame = 3 Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845 MIVDP++LLAFIP GLALN+TPGPDM+FCLAQGL+GG R GWAAS GV LGG+VHV LAGLGLGA VAALPGAFDVIRW GAAYLAWIAWKTLRTP+AG DAP M PAKA +QGFVVN+TNPK+IL VLAFVPQF+DP VLPQFL+ Sbjct: 1 MIVDPVMLLAFIPAGLALNITPGPDMLFCLAQGLKGGPRAGWAASTGVGLGGVVHVTLAGLGLGALVAALPGAFDVIRWVGAAYLAWIAWKTLRTPLAGGDAPAMTPAKALRQGFVVNLTNPKYILFVLAFVPQFVDPARAVLPQFLV 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A238K4G4_9RHOB (Type-4 uracil-DNA glycosylase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K4G4_9RHOB) HSP 1 Score: 238 bits (607), Expect = 7.770e-75 Identity = 115/133 (86.47%), Postives = 125/133 (93.98%), Query Frame = 1 Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399 QGKPFVGRAGQLLDRML AVGLSR +SVYITNVLPWRPPQNR+P P+EIAML+PFL+RHIAL +PD+LVIMGNTSAQALLG+RGITRLRG W EAAGRPALPMLHPAYLLRTP AKREAWADLL+LQA+LR L Sbjct: 127 QGKPFVGRAGQLLDRMLGAVGLSRTESVYITNVLPWRPPQNREPTPEEIAMLLPFLRRHIALADPDLLVIMGNTSAQALLGKRGITRLRGTWAEAAGRPALPMLHPAYLLRTPAAKREAWADLLSLQARLRAL 259
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A238K494_9RHOB (Homoserine/homoserine lactone efflux protein n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238K494_9RHOB) HSP 1 Score: 234 bits (597), Expect = 3.830e-74 Identity = 119/148 (80.41%), Postives = 132/148 (89.19%), Query Frame = 3 Query: 402 MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845 MIVDP++LLAF+P LALNVTPGPDMMFCLAQGLRGG RCGWAASAGV + GMVHVLLAGLGLGA VAALPGAFDVIRWGGAAYLAWIAWKTLRTP+AG +A + A+AA+QGFVVN+TNPKFIL VLAFVPQF++P VL QFL+ Sbjct: 1 MIVDPVMLLAFVPASLALNVTPGPDMMFCLAQGLRGGPRCGWAASAGVTVSGMVHVLLAGLGLGALVAALPGAFDVIRWGGAAYLAWIAWKTLRTPLAGVEAAPLSLARAARQGFVVNMTNPKFILFVLAFVPQFVNPAGHVLAQFLV 148
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A3JXS0_9RHOB (Transmembrane amino acid efflux protein n=3 Tax=Sagittula TaxID=58842 RepID=A3JXS0_9RHOB) HSP 1 Score: 234 bits (596), Expect = 6.200e-74 Identity = 118/147 (80.27%), Postives = 132/147 (89.80%), Query Frame = 3 Query: 405 IVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALGGMVHVLLAGLGLGARVAALPGAFDVIRWGGAAYLAWIAWKTLRTPIAGSDAPMMVPAKAAKQGFVVNITNPKFILIVLAFVPQFIDPTFPVLPQFLI 845 IVDP++LLAF+PVGLALNVTPGPDM+FC+AQGLRGG RCGWAASAGVA GGMVHVLLAGLGLGA VAA+PGAFD IRW GAAYL +IAWKT RTP+AG D+P + P AA+QGFVVN+TNPKFIL VLAFVPQF+DP+ PVL QFLI Sbjct: 6 IVDPVMLLAFLPVGLALNVTPGPDMLFCMAQGLRGGPRCGWAASAGVASGGMVHVLLAGLGLGALVAAVPGAFDAIRWAGAAYLVYIAWKTWRTPLAGVDSPPLRPFHAARQGFVVNMTNPKFILFVLAFVPQFVDPSRPVLAQFLI 152
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Match: A0A0B3RXZ6_9RHOB (Type-4 uracil-DNA glycosylase n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3RXZ6_9RHOB) HSP 1 Score: 236 bits (601), Expect = 7.120e-74 Identity = 115/133 (86.47%), Postives = 123/133 (92.48%), Query Frame = 1 Query: 1 QGKPFVGRAGQLLDRMLAAVGLSRVDSVYITNVLPWRPPQNRDPKPDEIAMLIPFLQRHIALVNPDVLVIMGNTSAQALLGRRGITRLRGQWQEAAGRPALPMLHPAYLLRTPGAKREAWADLLALQAKLRTL 399 QGKPFVGRAGQLLDRMLAAVGLSR +SVYITNVLPWRPPQNRDPKPDEIAML+PFL RHIAL +PD+LVIMGNTS QALLGRRGITRLRG W EAA RPALPMLHPAYLLR P AKREAWAD+L+L++KLR L Sbjct: 131 QGKPFVGRAGQLLDRMLAAVGLSRAESVYITNVLPWRPPQNRDPKPDEIAMLLPFLHRHIALADPDLLVIMGNTSCQALLGRRGITRLRGTWVEAAERPALPMLHPAYLLRNPQAKREAWADMLSLKSKLRAL 263 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9943.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9943.1.1 >prot_C-australica_Contig_9943.1.1 ID=prot_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=148bp MIVDPILLLAFIPVGLALNVTPGPDMMFCLAQGLRGGARCGWAASAGVALback to top mRNA from alignment at C-australica_Contig_9943:3..847- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9943.1.1 ID=mRNA_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=845bp|location=Sequence derived from alignment at C-australica_Contig_9943:3..847- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9943:3..847- >mRNA_C-australica_Contig_9943.1.1 ID=mRNA_C-australica_Contig_9943.1.1|Name=mRNA_C-australica_Contig_9943.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=444bp|location=Sequence derived from alignment at C-australica_Contig_9943:3..847- (Chrysoparadoxa australica CS_1217)back to top |