mRNA_C-australica_Contig_993.18.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_993.18.1
Unique NamemRNA_C-australica_Contig_993.18.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_993.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_993contigC-australica_Contig_993:16990..17350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size361
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588861.2567992-CDS-C-australica_Contig_993:16989..173251682588861.2567992-CDS-C-australica_Contig_993:16989..17325Chrysoparadoxa australica CS_1217CDSC-australica_Contig_993 16990..17325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588861.2729-UTR-C-australica_Contig_993:17325..173501682588861.2729-UTR-C-australica_Contig_993:17325..17350Chrysoparadoxa australica CS_1217UTRC-australica_Contig_993 17326..17350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_993.18.1prot_C-australica_Contig_993.18.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_993 16990..17325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_993.18.1

>prot_C-australica_Contig_993.18.1 ID=prot_C-australica_Contig_993.18.1|Name=mRNA_C-australica_Contig_993.18.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=112bp
GGACCNFITKYFTYFDAHNAHPLLGARRLTSTTGLLLVCIAFRPCTFPGA
TTSAPFLNIVIGCYLPFSSTNGSEASNVAASACTFLSSFLTLCPSSKGLQ
IDAPLTAFCKA*
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mRNA from alignment at C-australica_Contig_993:16990..17350+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_993.18.1 ID=mRNA_C-australica_Contig_993.18.1|Name=mRNA_C-australica_Contig_993.18.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=361bp|location=Sequence derived from alignment at C-australica_Contig_993:16990..17350+ (Chrysoparadoxa australica CS_1217)
GGGGGAGCATGCTGCAACTTTATTACGAAGTACTTCACGTATTTTGATGC
ACATAATGCACATCCATTGCTAGGAGCCAGGAGGCTCACCTCCACGACTG
GTCTTCTGTTGGTCTGCATTGCCTTCAGACCCTGTACCTTCCCAGGTGCA
ACAACTTCAGCACCCTTCTTAAACATAGTCATTGGTTGCTACCTGCCCTT
CTCTTCAACAAACGGCAGCGAAGCATCAAACGTGGCAGCCAGCGCTTGCA
CCTTCTTGAGCAGCTTCCTGACGCTCTGCCCCAGCTCCAAAGGACTGCAA
ATTGACGCTCCCCTTACCGCCTTCTGCAAAGCTTGATGTTAAGGTGCTTG
CTGACTGCCCC
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Coding sequence (CDS) from alignment at C-australica_Contig_993:16990..17350+

>mRNA_C-australica_Contig_993.18.1 ID=mRNA_C-australica_Contig_993.18.1|Name=mRNA_C-australica_Contig_993.18.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=336bp|location=Sequence derived from alignment at C-australica_Contig_993:16990..17350+ (Chrysoparadoxa australica CS_1217)
GGGGGAGCATGCTGCAACTTTATTACGAAGTACTTCACGTATTTTGATGC
ACATAATGCACATCCATTGCTAGGAGCCAGGAGGCTCACCTCCACGACTG
GTCTTCTGTTGGTCTGCATTGCCTTCAGACCCTGTACCTTCCCAGGTGCA
ACAACTTCAGCACCCTTCTTAAACATAGTCATTGGTTGCTACCTGCCCTT
CTCTTCAACAAACGGCAGCGAAGCATCAAACGTGGCAGCCAGCGCTTGCA
CCTTCTTGAGCAGCTTCCTGACGCTCTGCCCCAGCTCCAAAGGACTGCAA
ATTGACGCTCCCCTTACCGCCTTCTGCAAAGCTTGA
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