mRNA_C-australica_Contig_992.8.2 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: A0A836CAI5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI5_9STRA) HSP 1 Score: 146 bits (368), Expect = 5.710e-36 Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 2
Query: 38 GSSLVNYSKLTDRHMDDKRFERELKVKENLEKAAP------SAGAGGGEA----------APSATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERD 367
G S V+YSK++DRH+DDKRFEREL+ K+NLE AAP AGAGG +A APSA YDAF+RM+AGL ERTIADKINDPNR+TW+HFKK N DKLD+ G +LKKM+ YRK+LD ER+
Sbjct: 25 GGSGVDYSKVSDRHVDDKRFERELEHKKNLE-AAPYAIGKGEAGAGGDQASRTKTLLLHAAPSAAYDAFIRMQAGLGERTIADKINDPNRITWDHFKKVNADKLDLVGNDLKKMVEYRKQLDRERE 149
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: D7FSR1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSR1_ECTSI) HSP 1 Score: 140 bits (352), Expect = 5.930e-34 Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 2
Query: 38 GSSLVNYSKLTDRHMDDKRFERELKVKENLEKAAPSAGAGGGEAAPSATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRALKKAK 388
G S+++Y K+ +RHMDDKRFERELK KE L+K A + E APSATYDAF+RM+ G RTIADKINDPNRV+WE F+K+N DKLDI G + KKM+ YR +LD ER+ AL K +
Sbjct: 26 GKSVIDYGKVNERHMDDKRFERELKHKEVLQKQADQGASKESEQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGR 142
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: A0A7S3Y9Y5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Y5_HETAK) HSP 1 Score: 124 bits (310), Expect = 2.400e-29 Identity = 68/114 (59.65%), Postives = 83/114 (72.81%), Query Frame = 2
Query: 50 VNYSKLTDRHMDDKRFERELKVKENL-EKAAPSAGAGGGEAAPSATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRALKKAK 388
VNYS + DRH DD RFEREL+ K+ L E++ GG APSATYDAF+RM G ERTI +KI D NR TW+ +KK++EDKL+IAG ELKKMI YRK+LD R++AL AK
Sbjct: 30 VNYSVIHDRHKDDVRFERELEFKQKLQEESGKMEDEEGGAKAPSATYDAFMRMATGQQERTIQEKIADSNRPTWDQYKKDHEDKLEIAGAELKKMIEYRKQLDANREKALNDAK 143
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: A0A482STU7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STU7_9ARCH) HSP 1 Score: 116 bits (291), Expect = 1.630e-26 Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 2
Query: 50 VNYSKLTDRHMDDKRFERELKVKENLEKAAPSAGAGGGEAAPSATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRALKKAKQ 391
VNY ++ DR + DKRFERE V+E S+GA + S+T+DAF RM AGL RTI+DKINDP R TWE +KKENEDKLDI G E++KM+ YR +LD ERD LK K+
Sbjct: 16 VNYEQVLDRQVGDKRFEREKTVRE-------SSGAAAVKPVMSSTFDAFQRMAAGLEGRTISDKINDPTRPTWEQYKKENEDKLDIVGSEVRKMVEYRAQLDKERDDRLKSRKR 122
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: A0A7S2SNX5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX5_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.770e-23 Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 2
Query: 50 VNYSKLTDRHMDDKRFERELKVKENLEKAAPSAGAGGGE----AAP---SATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRAL 376
V Y K+ DRH+DD RFEREL K++++ P A GE AAP SATYDAF+RM G ERTIADKIND NR TW+ +KK+NE+ LD+ G + +KM+ YRK LD+ R+R L
Sbjct: 36 VRYDKVADRHLDDVRFERELAFKKSMQ---PGGKAEVGEEMQAAAPAQSSATYDAFMRMATGRQERTIADKINDSNRPTWDEYKKKNEELLDMDGVQHRKMMEYRKTLDEAREREL 148
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: A0A5D6Y573_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y573_9STRA) HSP 1 Score: 108 bits (269), Expect = 6.740e-23 Identity = 63/121 (52.07%), Postives = 83/121 (68.60%), Query Frame = 2
Query: 41 SSLVNYSKLTDRHMDDKRFERELKVKENLEKAAPSAGAGGGEAA------PSATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDI-AGKELKKMIAYRKELDDERDRALKK 382
SS VNY+++ DR +DD RFER+ ++ AP+ GG +AA SAT DAF+RM G ERTIAD+I+DPNR TWE +K++N DKLD+ GKE K+M AYRK+LD R++AL K
Sbjct: 15 SSGVNYAQVLDRQVDDVRFERQRAIRAAGAAPAPAVQQGGADAAGKKPPAQSATMDAFMRMVTGKEERTIADRISDPNRPTWEQYKRDNADKLDLFGGKEEKEMAAYRKKLDAAREKALAK 135
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: A0A7S2RE01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RE01_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.430e-21 Identity = 61/132 (46.21%), Postives = 85/132 (64.39%), Query Frame = 2
Query: 26 ESGMGSSLVNYSKLTDRHMDDKRFERELKVKENLEK--------------AAPSAGAGGGEAA-PSATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRAL 376
+SG G VNYS+++DRH+DD R+E+ KE+ A +AG+GG + PSA +A +R+ AG+ ERTIA K+ D NR TWE +KK+NEDKL+I+G + KKM YRK+LD+ERD+ L
Sbjct: 7 KSGSG---VNYSQISDRHVDDARYEKHKAEKESTSSGXXXXXXSGNVRSSANNNAGSGGTTTSVPSAQMEAVMRLMAGMEERTIAQKLADSNRPTWEQYKKDNEDKLNISGVDQKKMEEYRKQLDEERDKIL 135
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: W2QV57_PHYPN (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2QV57_PHYPN) HSP 1 Score: 103 bits (257), Expect = 2.180e-21 Identity = 61/115 (53.04%), Postives = 79/115 (68.70%), Query Frame = 2
Query: 41 SSLVNYSKLTDRHMDDKRFERE--LKVKENLEKAAPSAGAGGGEAAP-SATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRAL 376
SS V+YS++ DR +DD RFER+ ++V + A AG AAP SAT DAF+RM G ERTIAD+I+DPNR TWE +KKEN DKLD++G K+M YRK+LD R++ L
Sbjct: 12 SSGVDYSQVLDRQIDDNRFERQRAIRVASSAPPAEQPKHAGAKAAAPQSATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLSGNGEKEMKEYRKKLDAAREKKL 126
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: A0A3R7J1T7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J1T7_9STRA) HSP 1 Score: 103 bits (256), Expect = 3.130e-20 Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 2
Query: 41 SSLVNYSKLTDRHMDDKRFERELKVKEN-----LEKAAPSAGAGGGEAAP-SATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRAL 376
SS V+YS++ DR +DD RFER+ ++ +EKA PS+ A P SAT DAF+RM G ERTIAD+I+DPNR TWE +KKEN DKLD++G K+M YRK+LD R++AL
Sbjct: 13 SSGVDYSQVLDRQIDDDRFERQRAIRAAAAAPPVEKAKPSSS---NVATPQSATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLSGNGEKEMKEYRKKLDAAREKAL 127
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Match: H3GHF7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHF7_PHYRM) HSP 1 Score: 104 bits (259), Expect = 4.540e-20 Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 2
Query: 41 SSLVNYSKLTDRHMDDKRFERELKVKENLEKAA---PSAGAGGGEAAPSATYDAFVRMEAGLNERTIADKINDPNRVTWEHFKKENEDKLDIAGKELKKMIAYRKELDDERDRAL 376
SS V+YS++ DR +DD+RFER+ ++ A P A G A SAT DAF+RM G ERTIAD+I+DPNR TWE FKKEN DKLD++G K+M YRK+LD R++ L
Sbjct: 12 SSGVDYSQVQDRQVDDERFERQRAIRAASAAAPAEKPQHAAAKGAAPQSATMDAFMRMVTGKEERTIADRISDPNRPTWEQFKKENADKLDLSGNGEKEMKEYRKKLDAAREKRL 126 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_992.8.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_992.8.2 >prot_C-australica_Contig_992.8.2 ID=prot_C-australica_Contig_992.8.2|Name=mRNA_C-australica_Contig_992.8.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=241bp MGSSLVNYSKLTDRHMDDKRFERELKVKENLEKAAPSAGAGGGEAAPSATback to top mRNA from alignment at C-australica_Contig_992:14761..17445- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_992.8.2 ID=mRNA_C-australica_Contig_992.8.2|Name=mRNA_C-australica_Contig_992.8.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2685bp|location=Sequence derived from alignment at C-australica_Contig_992:14761..17445- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_992:14761..17445- >mRNA_C-australica_Contig_992.8.2 ID=mRNA_C-australica_Contig_992.8.2|Name=mRNA_C-australica_Contig_992.8.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=723bp|location=Sequence derived from alignment at C-australica_Contig_992:14761..17445- (Chrysoparadoxa australica CS_1217)back to top |