|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1250 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 1125 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588859.963315-UTR-C-australica_Contig_992:8325..8395 | 1682588859.963315-UTR-C-australica_Contig_992:8325..8395 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_992 8326..8395 - |
| 1682588859.9915197-UTR-C-australica_Contig_992:9643..9646 | 1682588859.9915197-UTR-C-australica_Contig_992:9643..9646 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_992 9644..9646 - |
| 1682588860.0104313-UTR-C-australica_Contig_992:9761..9813 | 1682588860.0104313-UTR-C-australica_Contig_992:9761..9813 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_992 9762..9813 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682588859.9732025-CDS-C-australica_Contig_992:8395..9370 | 1682588859.9732025-CDS-C-australica_Contig_992:8395..9370 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_992 8396..9370 - |
| 1682588859.981697-CDS-C-australica_Contig_992:9493..9643 | 1682588859.981697-CDS-C-australica_Contig_992:9493..9643 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_992 9494..9643 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_992.5.1 >prot_C-australica_Contig_992.5.1 ID=prot_C-australica_Contig_992.5.1|Name=mRNA_C-australica_Contig_992.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=375bp
MGQACLKGVLLTPGDAVDQNLLLTRAFTVLLTTGGLVGFIGGEDTKKLTE
VCLTFCNDVRSVKAMWHLKKLSIPSKEGRIVPFRAYSLTVDEIGQSIDTV
VWPEGLEHLVFGDCRHTQWSQLFMHDFSERQVVWPAGLKSLQLGWKFNVS
LVGVTFPESLQELSFSWAFNQPLVGVRFPDSLRVLSFGRRFDQPLVGVSL
PDGLQKLKFGVCFNHPLVGVTLPAGLKALTFGLDFDQSLDGVTLPSGLRE
LTFGWRFNQPVEGVVLPSNLQELTFQGAFNQPLDGVSLPASLKVLILGHR
FNQSLAGTRLPDGLERLSFGHRFQQSLEGIRMPRSLKELQFGWNKPLVGA
NLQNCLRRLMIGEQINQPVDDASL* back to topmRNA from alignment at C-australica_Contig_992:8326..9813- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_992.5.1 ID=mRNA_C-australica_Contig_992.5.1|Name=mRNA_C-australica_Contig_992.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1488bp|location=Sequence derived from alignment at C-australica_Contig_992:8326..9813- (Chrysoparadoxa australica CS_1217)
CGGAAGGGAAAAAATTGCGAATAGTAATCGGGCGCTGCCTTTAAGGAGCT
AGGTAATGTCCTGTATAACACCCCGTAACCATATGAGCCTCTCGCCTGAT
TGTAGTTGATGTACCCCTCTTCCATCAATAATTGCAGCTAACTCCCTCCT
TCTGCTCTCTCTCCTAGACTATGGGACAAGCGTGCTTGAAGGGGGTGCTT
TTAACCCCCGGAGATGCGGTCGACCAGAATCTCCTCCTCACGAGAGCTTT
CACAGTCCTGCTTACAACTGGTGGCCTCGTTGGGTTCATAGGTGGAGAGG
ACACTAAGAAGCTGACTGAGGTACCGCCTTCTCACTTGCTGCTACATCTG
GCCTAATTGCCAACTATAGCGCTCTTGTCATGCCTTGTAAGCCACACCTT
TTCACACACCCCTCTGGCAAAACCTCTGCCTTCTTATCGCCAGGTGTGCC
TGACATTTTGTAATGACGTGAGGTCGGTCAAGGCCATGTGGCATCTCAAG
AAATTGTCTATTCCAAGCAAAGAGGGGCGTATTGTACCATTCAGAGCCTA
CAGCCTGACAGTCGATGAGATTGGGCAAAGCATTGACACAGTGGTCTGGC
CAGAAGGGTTGGAGCACTTGGTCTTTGGGGATTGCCGACATACTCAGTGG
TCCCAGCTATTCATGCACGACTTCAGTGAGAGGCAAGTGGTGTGGCCAGC
CGGGTTGAAGAGCTTGCAACTAGGTTGGAAGTTCAATGTTTCACTGGTGG
GGGTGACGTTTCCGGAGAGCCTGCAGGAGCTTTCATTCAGTTGGGCCTTC
AACCAGCCGCTGGTTGGCGTGCGCTTTCCGGACAGCCTGCGGGTGCTTTC
GTTTGGGAGGCGGTTCGATCAGCCTCTGGTCGGCGTAAGCCTGCCAGACG
GGCTGCAGAAGCTGAAGTTTGGAGTTTGCTTCAACCATCCACTGGTTGGC
GTGACCTTGCCAGCAGGCCTGAAGGCGTTAACGTTTGGTCTGGACTTTGA
CCAGTCATTAGATGGTGTAACTCTGCCGAGCGGACTGCGAGAGCTGACCT
TCGGGTGGCGCTTCAATCAGCCCGTGGAGGGTGTGGTTTTACCGAGCAAT
CTGCAGGAGCTAACGTTCCAGGGGGCCTTCAATCAGCCGTTGGATGGAGT
TTCCTTGCCTGCCAGCCTGAAAGTGTTGATATTAGGCCACCGGTTCAATC
AGTCTCTTGCTGGTACCCGCCTGCCAGATGGACTAGAGAGGCTGTCATTT
GGGCACCGCTTCCAACAATCTCTGGAGGGGATTAGAATGCCTCGCAGCTT
GAAAGAGCTGCAGTTTGGGTGGAATAAGCCACTGGTTGGTGCCAACTTGC
AGAACTGCCTGCGTCGGTTGATGATTGGTGAGCAGATCAATCAGCCAGTG
GATGATGCAAGCCTCTAGACCAGGCGATACGCAAGGTGTTTTCTTTTTAG
AGACAAGAGACGAATTAATTAATGAGATGATGATAAGA back to topCoding sequence (CDS) from alignment at C-australica_Contig_992:8326..9813- >mRNA_C-australica_Contig_992.5.1 ID=mRNA_C-australica_Contig_992.5.1|Name=mRNA_C-australica_Contig_992.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1125bp|location=Sequence derived from alignment at C-australica_Contig_992:8326..9813- (Chrysoparadoxa australica CS_1217)
ATGGGACAAGCGTGCTTGAAGGGGGTGCTTTTAACCCCCGGAGATGCGGT
CGACCAGAATCTCCTCCTCACGAGAGCTTTCACAGTCCTGCTTACAACTG
GTGGCCTCGTTGGGTTCATAGGTGGAGAGGACACTAAGAAGCTGACTGAG
GTGTGCCTGACATTTTGTAATGACGTGAGGTCGGTCAAGGCCATGTGGCA
TCTCAAGAAATTGTCTATTCCAAGCAAAGAGGGGCGTATTGTACCATTCA
GAGCCTACAGCCTGACAGTCGATGAGATTGGGCAAAGCATTGACACAGTG
GTCTGGCCAGAAGGGTTGGAGCACTTGGTCTTTGGGGATTGCCGACATAC
TCAGTGGTCCCAGCTATTCATGCACGACTTCAGTGAGAGGCAAGTGGTGT
GGCCAGCCGGGTTGAAGAGCTTGCAACTAGGTTGGAAGTTCAATGTTTCA
CTGGTGGGGGTGACGTTTCCGGAGAGCCTGCAGGAGCTTTCATTCAGTTG
GGCCTTCAACCAGCCGCTGGTTGGCGTGCGCTTTCCGGACAGCCTGCGGG
TGCTTTCGTTTGGGAGGCGGTTCGATCAGCCTCTGGTCGGCGTAAGCCTG
CCAGACGGGCTGCAGAAGCTGAAGTTTGGAGTTTGCTTCAACCATCCACT
GGTTGGCGTGACCTTGCCAGCAGGCCTGAAGGCGTTAACGTTTGGTCTGG
ACTTTGACCAGTCATTAGATGGTGTAACTCTGCCGAGCGGACTGCGAGAG
CTGACCTTCGGGTGGCGCTTCAATCAGCCCGTGGAGGGTGTGGTTTTACC
GAGCAATCTGCAGGAGCTAACGTTCCAGGGGGCCTTCAATCAGCCGTTGG
ATGGAGTTTCCTTGCCTGCCAGCCTGAAAGTGTTGATATTAGGCCACCGG
TTCAATCAGTCTCTTGCTGGTACCCGCCTGCCAGATGGACTAGAGAGGCT
GTCATTTGGGCACCGCTTCCAACAATCTCTGGAGGGGATTAGAATGCCTC
GCAGCTTGAAAGAGCTGCAGTTTGGGTGGAATAAGCCACTGGTTGGTGCC
AACTTGCAGAACTGCCTGCGTCGGTTGATGATTGGTGAGCAGATCAATCA
GCCAGTGGATGATGCAAGCCTCTAG back to top
|