mRNA_C-australica_Contig_9910.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A3B0UD99_9ZZZZ (ABC transporter, permease protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0UD99_9ZZZZ) HSP 1 Score: 105 bits (263), Expect = 4.280e-27 Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 1 FLMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 FL E++ ITL +GYVG++ FI+SG L+SMM SF FP FF P V AI ATLVLAI G+LAGYFPARKAAK+ PIEAL+DE Sbjct: 81 FLQESMFITLTAGYVGLVAGFVFIDSGTLSSMMESFSFPMDFFKKPEVSLKGAITATLVLAIFGSLAGYFPARKAAKVEPIEALKDE 167
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: UPI00191FF01A (ABC transporter permease n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191FF01A) HSP 1 Score: 110 bits (276), Expect = 5.630e-27 Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 1 Query: 1 FLMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 FL E++ ITLV+GYVG+++ FI+SG L+ MM SFGFP FF P V A ATLVLA+ G+LAGYFPARKAAK+PPIEALRDE Sbjct: 329 FLQESMFITLVAGYVGLVLGFVFIDSGGLSEMMFSFGFPVDFFKKPEVSLRGAAIATLVLALLGSLAGYFPARKAAKVPPIEALRDE 415
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A3B0VRL9_9ZZZZ (ABC transporter, permease protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0VRL9_9ZZZZ) HSP 1 Score: 107 bits (268), Expect = 6.860e-26 Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1 Query: 1 FLMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 FL E++ ITL +GYVGM+ FI+SG L++MM SF FP FF NP V + AI ATLVLA+ G+LAGYFPARKAAK+ PIEAL+DE Sbjct: 316 FLQESMFITLTAGYVGMVAGFIFIDSGSLSAMMESFSFPMDFFKNPEVSISGAITATLVLAVFGSLAGYFPARKAAKVEPIEALKDE 402
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A7K3XFJ4_9BACT (FtsX-like permease family protein n=1 Tax=Mariniphaga sp. TaxID=1954475 RepID=A0A7K3XFJ4_9BACT) HSP 1 Score: 86.3 bits (212), Expect = 6.510e-18 Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1 Query: 4 LMEALLITLVSGYVGMIVAMAFIE--SGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 L+E++LIT V+GY G+++ + +E + +L M S G FF NP VDF A+A+TL+L ISG LAGY PARKAA + PIEALRDE Sbjct: 331 LLESILITTVAGYTGLVIGVGIMEGINYFLEQMFASGGGDGMFFRNPTVDFGTALASTLILVISGALAGYLPARKAANVKPIEALRDE 418
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A0K8QXI9_9BACT (ABC-type antimicrobial peptide transport system, permease component n=2 Tax=Bacteroidia TaxID=200643 RepID=A0A0K8QXI9_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 6.110e-17 Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 1 Query: 4 LMEALLITLVSGYVGMIVAMAFIE--SGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 L+E++LIT ++GY+G+++ + +E + L M+ S G + FF NP VDF AI+ATL+L +SG LAGY PARKAA + PIEAL DE Sbjct: 331 LLESILITTIAGYIGLVMGVGLMEGFNYALEQMISSGGGDQIFFRNPTVDFGTAISATLILILSGALAGYIPARKAASVKPIEALHDE 418
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A6A0R7D4_9BACT (ABC transporter permease n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6A0R7D4_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 1.130e-16 Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1 Query: 4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 +ME++LIT SGY+GM++ + +E + F P FF+NP VDF AI AT++L ++GTLAG PARKAA I PIEALRDE Sbjct: 332 MMESILITSFSGYIGMVLGVGIVE------LANKFMPPSEFFMNPEVDFQVAITATIILIVAGTLAGLIPARKAASIRPIEALRDE 411
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A2N5Z295_9BACT (FtsX domain-containing protein (Fragment) n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A2N5Z295_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 3.230e-16 Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 L+E++LIT +GYVG+++ + +E +LS FF NP DF AI+AT++L +SG LAG+ PARKAA I PIEALRDE Sbjct: 77 LLESILITAFAGYVGLVLGVGLLE-------LLSPHIQSEFFTNPEADFRIAISATILLILSGALAGFVPARKAASIKPIEALRDE 155
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A081BQC0_9BACT (Putative ABC transporter ATP-binding protein n=1 Tax=Candidatus Moduliflexus flocculans TaxID=1499966 RepID=A0A081BQC0_9BACT) HSP 1 Score: 80.9 bits (198), Expect = 5.570e-16 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1 Query: 4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 L E++L+T VSGY+G++V++ IE ++ M +F +F NP +DF AI AT++L ++G +AGY PAR+AAKI PIEALR E Sbjct: 329 LQESVLLTAVSGYMGLVVSVGLIEG--ISYAMNTFHLQSDYFSNPEIDFKTAIFATMLLVVTGAIAGYIPARQAAKINPIEALRSE 412
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A1G9JG61_9BACT (Putative ABC transport system permease protein n=1 Tax=Catalinimonas alkaloidigena TaxID=1075417 RepID=A0A1G9JG61_9BACT) HSP 1 Score: 80.5 bits (197), Expect = 7.710e-16 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 10 EALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 EA+ IT+V+GY+G++ + IE + ++ S G FF NP +D A+ ATL+L I+G LAG+FPARKAA IPPIEALR+E Sbjct: 333 EAIFITIVAGYLGLLAGVGLIEL--VNYLLQSSGGGVDFFRNPEIDLQTALMATLLLVIAGALAGFFPARKAAAIPPIEALREE 414
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A1Y1CKQ7_9BACT (Uncharacterized protein n=1 Tax=Labilibaculum antarcticum TaxID=1717717 RepID=A0A1Y1CKQ7_9BACT) HSP 1 Score: 80.5 bits (197), Expect = 7.790e-16 Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPES-FFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261 LMEA+ IT SGY+G+I + +E ++ P + +F+NP VD A+ AT+VL I+G LAG+FPARKAA+I PIEALRDE Sbjct: 331 LMEAIFITAASGYIGLIAGVGLLEMITKFDLIYKIYPPAAIYFINPQVDLGVAVGATIVLVITGALAGFFPARKAARIRPIEALRDE 417 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9910.2.1 >prot_C-australica_Contig_9910.2.1 ID=prot_C-australica_Contig_9910.2.1|Name=mRNA_C-australica_Contig_9910.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=86bp MEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANback to top mRNA from alignment at C-australica_Contig_9910:586..849- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9910.2.1 ID=mRNA_C-australica_Contig_9910.2.1|Name=mRNA_C-australica_Contig_9910.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=264bp|location=Sequence derived from alignment at C-australica_Contig_9910:586..849- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9910:586..849- >mRNA_C-australica_Contig_9910.2.1 ID=mRNA_C-australica_Contig_9910.2.1|Name=mRNA_C-australica_Contig_9910.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=258bp|location=Sequence derived from alignment at C-australica_Contig_9910:586..849- (Chrysoparadoxa australica CS_1217)back to top |