mRNA_C-australica_Contig_99.17.3 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A835YSW0_9STRA (U3-containing 90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.540e-51 Identity = 102/220 (46.36%), Postives = 137/220 (62.27%), Query Frame = 1 Query: 1099 SDVLWACIAKSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSSFVTR-----KNTGKGLKQAPGT---------AAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPEL------GHLKIALY 1698 +D +W + + +EL +PW+E E M + FGAHT+ KLPGYIK+ +P W + + +G +K G A GSPP+++VCSGARRCMEVIKAL+ FRC VLKLFAKH+ EQAKMLR+ F +AVGTPGR+ +LA GA++L TQLL+LD ++ KG SVLD+ G EDLC +L +V+P L G L++ LY Sbjct: 127 ADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEVIKALSPFRCQVLKLFAKHLKPAEQAKMLRRY-FPIAVGTPGRVLKLAAEGAVALGGTQLLLLDAARDAKGRSVLDMAGAREDLCELLRAHVRPHLRSAPGPGALQLGLY 345
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI) HSP 1 Score: 186 bits (472), Expect = 8.970e-50 Identity = 94/195 (48.21%), Postives = 129/195 (66.15%), Query Frame = 1 Query: 1090 EDPSDVLWACIAKSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSSFVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPEL 1674 E+ ++ LWA K ++TPLEL PW+ + +V FGAHT KL G+IK+ +P+W + +N+ A +GSP V++VC+GARRC+EV+K L FRC V+KLFAKH+ +EEQ MLRK F L VGTPGR++ LA G+L L ++ L++LDLEKNVKG SVLD+ GV+ D L+D V+P L Sbjct: 165 EEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSN----------APRGSPSVLIVCTGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 349
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A6U1QK41_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QK41_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.180e-33 Identity = 64/119 (53.78%), Postives = 89/119 (74.79%), Query Frame = 1 Query: 1342 PPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLR-KSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPELGHLKIAL 1695 P V+VVCSGARR ++VIK LA F C V KLF+KH+ +E+Q K+L+ K K LAVGTP R+ +L TG L L+ T ++++D+ K+VK FS+L + GV EDL ++ D++KPEL HLK+AL Sbjct: 13 PRVVVVCSGARRAVDVIKKLAVFGCPVAKLFSKHLKLEDQQKLLQNKRKAPLAVGTPNRLYKLLSTGDLKLRDTSIIIIDMNKDVKNFSILQVHGVCEDLANVIKDFIKPELNHLKVAL 131
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A6G0WCP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCP8_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.520e-30 Identity = 77/187 (41.18%), Postives = 114/187 (60.96%), Query Frame = 1 Query: 1144 MTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSSFVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPELG--HLKIALY 1698 +TP E+ + E HM VP+FG HTL L +++S+ P W S GKG+K K SP +I+VC+ A R +EV KALA+F+C V KLF KH+ V EQ + L++ +A+GTPGRIK L E ALSL+ T +VLD+ ++ K S+L++K ++D ++ D++ L +L +ALY Sbjct: 115 LTPHEIANGLTEA-HMTVVPNFGKHTLESLSRFLRSICPAWKSLFK----GKGIKY-------KASPILIIVCASALRAVEVGKALASFKCHVAKLFGKHIKVSEQVQNLKRF-HPIAIGTPGRIKTLLEMKALSLECTTHVVLDMHRDSKEMSILELKDTSKDTIDIIRDHLLTRLASQNLSLALY 288
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A485LER4_9STRA (Aste57867_20262 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LER4_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.260e-30 Identity = 77/194 (39.69%), Postives = 114/194 (58.76%), Query Frame = 1 Query: 1123 AKSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSSFVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPELGH--LKIALY 1698 AK +TPLE+ + +E H VP+FG H L L +++S+ P+W GKG+K K SP +++VCS A R +EV KA+A F+C V KLFAKH+ + EQ L++ +A+GTPGRIK L E ALSL+ T +VLD+ ++ K S+L++K A+D + +++ P L L +ALY Sbjct: 100 AKLYGDNLTPLEIANGLVE-SHFATVPNFGKHNLDSLSRFLRSLCPKWKLLFK----GKGIKD-------KKSPILLIVCSSALRAVEVGKAIAVFKCHVAKLFAKHLKLSEQVDNLKRF-HPIAIGTPGRIKTLLEMKALSLECTTHVVLDMYRDSKNMSILELKDTAKDTVDCIREHMLPALASQSLSLALY 280
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A6A3I4I1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I4I1_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.520e-29 Identity = 79/196 (40.31%), Postives = 109/196 (55.61%), Query Frame = 1 Query: 1126 KSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSS-FVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPELG----HLKIALY 1698 K G MT LEL E H G H L +LP YI ++P + FV GKG ++ SP +++CS A RC++VIK L F+C V KLFAKH+ V+EQAK L +AVGTP R+K+L E GALSLK T ++ D+EK+ K +VL++K A ++ +L Y P L ++KI L+ Sbjct: 104 KHRGGQMTSLELADGLTET-HFVAPKGLGKHRLDRLPAYIHQLLPSFKKDFV-----GKGKRR-------DKSPYFLILCSSALRCVDVIKHLTPFKCRVAKLFAKHLKVDEQAKQLANMYLPIAVGTPARVKKLLEMGALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFYFTPLLNKEDSNMKIVLF 286
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A484E346_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E346_BRELC) HSP 1 Score: 127 bits (318), Expect = 2.740e-29 Identity = 76/195 (38.97%), Postives = 112/195 (57.44%), Query Frame = 1 Query: 1126 KSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSSFVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPELG----HLKIALY 1698 K G MT LEL ++ + G H + LP YI ++P + R GKG+++ SP +++CS A RC++VIK LA+F+C V KLFAKHM +EQAK L ++ +AVGTP R+K+L ET ALSLK T ++ D++K+ K +VLD+K A ++ +L Y+ P L +KI L+ Sbjct: 99 KHRGGQMTTLEL------VDGLNAPKGLGKHKVELLPAYIHHLLPSFK----RDFIGKGIRR-------DKSPIFLILCSSALRCVQVIKPLASFKCKVAKLFAKHMKADEQAKQLARNFLPIAVGTPARVKKLLETEALSLKHTTHVIFDMQKDKKQLTVLDLKDTASEMVDLLQFYLIPHLNKNDSRMKIVLF 276
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A3M6VRI3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRI3_9STRA) HSP 1 Score: 126 bits (317), Expect = 4.430e-29 Identity = 75/195 (38.46%), Postives = 109/195 (55.90%), Query Frame = 1 Query: 1126 KSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSSFVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPELGH----LKIALY 1698 K G MT LEL L H G H L LP YI ++P + R GKG+++ SP +++CS A RC+E+IK L +F+C V KLF KH+ + QAK L + F +AVGTP R+K+L E GALS+K T+ L+ D+EK+ K ++LD+K A ++ +L + P+L +KI L+ Sbjct: 101 KHRGGQMTSLELADG-LNESHFLVPAGLGKHKLELLPSYIHHLLPTYK----RDFLGKGMRR-------DKSPVFLILCSSALRCVELIKHLTSFKCRVAKLFGKHLKADTQAKQLTDNYFPIAVGTPARVKKLMEMGALSMKFTKRLIFDMEKDKKQLTLLDLKDTATEMMDLLQFHFLPQLNKEDSDMKIVLF 283
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: A0A7S3XUU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK) HSP 1 Score: 123 bits (309), Expect = 9.170e-29 Identity = 71/180 (39.44%), Postives = 107/180 (59.44%), Query Frame = 1 Query: 1105 VLWACIAKSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPK-LPGYIKSVMPEWS-SFVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDL 1638 + WA M G +T LEL E++ + P+ L ++K+ +P W K + +A +GSP V+VVC+GARRC+ ++K LA FRC V KLFAKHM ++EQ K+L+K +AVGTP R+ +LA+ G L L++T+L++ D+ K+VK ++LD+ GV EDL Sbjct: 10 LFWAKYVGVMGGKLTDLELRP-----ENVPEGAFLPVAAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVALLKGLAVFRCPVAKLFAKHMKIQEQQKLLKKCA-PIAVGTPSRLLKLAQFGDLCLESTELIIFDMGKDVKQMTILDVNGVKEDL 183
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Match: W2RI63_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2RI63_PHYPN) HSP 1 Score: 124 bits (312), Expect = 2.520e-28 Identity = 79/195 (40.51%), Postives = 107/195 (54.87%), Query Frame = 1 Query: 1126 KSMAGVMTPLELTSPWLELEHMCQVPSFGAHTLPKLPGYIKSVMPEWSSFVTRKNTGKGLKQAPGTAAVKGSPPVIVVCSGARRCMEVIKALATFRCSVLKLFAKHMNVEEQAKMLRKSKFSLAVGTPGRIKRLAETGALSLKATQLLVLDLEKNVKGFSVLDIKGVAEDLCGMLADYVKPELGH----LKIALY 1698 K G MT LEL L H G H L LP YI +MP + R GKG ++ SP +++CS A RC+EVIK L +F+C+VLKLFAKH EEQAK+L S +AVGTP R+K+L E ALSLK ++ D+EK+ K +VL++ A ++ +L Y P+L +KI L+ Sbjct: 108 KHRGGQMTSLELADG-LNESHFVAPKGVGKHRLDLLPSYIHHLMPSFK----RDFLGKGKRR-------DKSPYFLILCSSALRCLEVIKHLKSFKCNVLKLFAKHKKPEEQAKLLASSYSPIAVGTPARVKKLLEMDALSLKHMTHVIFDMEKDKKQLTVLELNDTATEMVDLLQFYFIPQLNKEDSKMKIVLF 290 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.17.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_99.17.3 >prot_C-australica_Contig_99.17.3 ID=prot_C-australica_Contig_99.17.3|Name=mRNA_C-australica_Contig_99.17.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=298bp MGDDLGGDWAQSPLRAGEAESEVEAEIESESEGKKRGRDIALNDDEQQRKback to top mRNA from alignment at C-australica_Contig_99:59131..61898+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_99.17.3 ID=mRNA_C-australica_Contig_99.17.3|Name=mRNA_C-australica_Contig_99.17.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2768bp|location=Sequence derived from alignment at C-australica_Contig_99:59131..61898+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_99:59131..61898+ >mRNA_C-australica_Contig_99.17.3 ID=mRNA_C-australica_Contig_99.17.3|Name=mRNA_C-australica_Contig_99.17.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=894bp|location=Sequence derived from alignment at C-australica_Contig_99:59131..61898+ (Chrysoparadoxa australica CS_1217)back to top |