mRNA_C-australica_Contig_989.4.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.730e-49 Identity = 75/102 (73.53%), Postives = 93/102 (91.18%), Query Frame = 2 Query: 86 MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 +++A A K+E++LDL KY+D+GVRVKFQGGRE+ G+LKGYDQLVNLVLDECVEY+RDP DPY++TD TR +G+VVCRGTQVSLI+P+DGTEEIANPF+ EE Sbjct: 20 VAMAQASKKESILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAEE 121
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.010e-48 Identity = 73/95 (76.84%), Postives = 89/95 (93.68%), Query Frame = 2 Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 ++E++LDL KY+D+GVRVKFQGGRE+HG+LKGYDQLVNLVLDE VEY+RDP DPY++T+ TR +G+VVCRGTQVSLI+P+DGTEEIANPFLQ EE Sbjct: 5 RKESILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVEE 99
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.430e-48 Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 2 Query: 104 KKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEE 388 +K+ENVLDL KYLD+GVRVKFQGGRE+ G+LKGYDQLVNLVLD+CVE+IRDP+DPY++TD TR +GLVVCRGTQVSLI+P+DG EEIANPFL E Sbjct: 4 RKKENVLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAE 98
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA) HSP 1 Score: 160 bits (406), Expect = 9.270e-48 Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 2 Query: 92 VADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 +A KRENVLDL KY+D+GVRVKFQGGRE+HG+LKG+DQLVNLVLDE VE++RDP DPY++T+ TR +GLVVCRG QVSLI+PVDG EEIANPFLQ EE Sbjct: 1 MATGGKRENVLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFLQMEE 100
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI) HSP 1 Score: 155 bits (393), Expect = 8.420e-46 Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 2 Query: 86 MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEE 388 M+ K+RE VLDL KYLD+GVRVK QGGRE+HG+LKG+D LVN+VLDEC+E+IRDP DPYKLT+ TR++GLVVCRGTQVSLI+P DG EEI NPF+ E Sbjct: 1 MAEVKKKERETVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPE 101
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: K3WSH5_GLOUD (Sm domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSH5_GLOUD) HSP 1 Score: 154 bits (388), Expect = 6.180e-45 Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 2 Query: 95 ADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 + A +++ +LDL KY+D+ VRVKF GGRE+HG LKGYDQLVNLVLD+CVE++RDP D Y+LT+ TR++GLVVCRGT V LI+PVDGTEEI NPFLQ+EE Sbjct: 12 SSAPRKDPILDLGKYIDQPVRVKFHGGREVHGFLKGYDQLVNLVLDDCVEFLRDPNDEYRLTEETRNVGLVVCRGTSVMLISPVDGTEEIPNPFLQQEE 110
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA) HSP 1 Score: 152 bits (383), Expect = 3.880e-44 Identity = 66/95 (69.47%), Postives = 86/95 (90.53%), Query Frame = 2 Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 K+E++LD+ KY+D+GVRVKFQGGRE+ G LKG+DQLVNLVLD+C E++RDP DPY++TD +R +G+VVCRGTQVSLI+PVDGTEEI+NPF+ + E Sbjct: 17 KKESILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIAQTE 111
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A8K1CTC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTC3_PYTOL) HSP 1 Score: 152 bits (383), Expect = 5.990e-44 Identity = 69/95 (72.63%), Postives = 84/95 (88.42%), Query Frame = 2 Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 +R+ +LDLAKY+D+ VRVKF GGRE+HG LKGYDQLVNLVLD+CVEY+RDP+D ++TD TR +GLVVCRGT V+LI+PVDGTEEI NPFL +EE Sbjct: 33 RRDQILDLAKYIDQPVRVKFFGGREVHGFLKGYDQLVNLVLDDCVEYLRDPSDASRVTDETRKVGLVVCRGTSVTLISPVDGTEEIPNPFLPQEE 127
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA) HSP 1 Score: 149 bits (375), Expect = 4.950e-43 Identity = 68/100 (68.00%), Postives = 86/100 (86.00%), Query Frame = 2 Query: 92 VADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 V A K++ VLDL KYLD+ V V+FQGGRE+ G+L+G+DQL+NLVLDE E +RDP DPY+LTD TR++GLV+CRGTQVSLI+PV+GTEEIANPF+Q E+ Sbjct: 4 VVQATKKDTVLDLNKYLDKAVCVRFQGGREVTGILRGFDQLINLVLDESKETLRDPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAED 103
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: F0WMT1_9STRA (U6 snRNAassociated Smlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMT1_9STRA) HSP 1 Score: 149 bits (375), Expect = 7.610e-43 Identity = 67/95 (70.53%), Postives = 83/95 (87.37%), Query Frame = 2 Query: 107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391 ++EN+LDL KY+D V VKF+GGR++HG LKGYDQLVNLVLDEC+E++R+ D Y+L+D TR IGLVVCRGT V LI+PVDGTEEIANPF+Q+EE Sbjct: 25 RKENILDLDKYIDHSVCVKFRGGRQVHGTLKGYDQLVNLVLDECIEFLREDNDSYRLSDKTRSIGLVVCRGTTVMLISPVDGTEEIANPFIQQEE 119 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_989.4.1 >prot_C-australica_Contig_989.4.1 ID=prot_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=105bp MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDEback to top mRNA from alignment at C-australica_Contig_989:9375..10593+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_989.4.1 ID=mRNA_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1219bp|location=Sequence derived from alignment at C-australica_Contig_989:9375..10593+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_989:9375..10593+ >mRNA_C-australica_Contig_989.4.1 ID=mRNA_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=315bp|location=Sequence derived from alignment at C-australica_Contig_989:9375..10593+ (Chrysoparadoxa australica CS_1217)back to top |