mRNA_C-australica_Contig_985.7.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: F0Y8H0_AURAN (MYND-type domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8H0_AURAN) HSP 1 Score: 58.9 bits (141), Expect = 1.850e-8 Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 2 Query: 386 ARLNIDEKAVPVVERCARCNAEAAEKLCSRCKMTRYCSRACQQAAWPSHKKTCIQP 553 AR + A P C C A A CSRCK +CSRACQQ+AWP H++TC P Sbjct: 14 ARKRVKLDAAP--PSCFHCGAAPATNRCSRCKAVHFCSRACQQSAWPQHRRTCAPP 67
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A6S9EAT3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EAT3_HETAK) HSP 1 Score: 58.9 bits (141), Expect = 8.940e-8 Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 2 Query: 95 TESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKA---FEEGGHGIKQLMVMDKDFLIGHLCTSGQPE 358 T E+RAH SEE+G+WL + + GG VYDVT L HPGG + D G +A KA FE+ H +M K F+IG L + + E Sbjct: 8 TWDEIRAHDSEEKGVWLCIGNAKTGGPMMVYDVTKYLNDHPGGGDQLLDVTGDNADKAHQMFEDINHTNDARDIMKK-FVIGKLKMTPEEE 97
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: W2SNI2_NECAM (Putative cytochrome b5 (Fragment) n=1 Tax=Necator americanus TaxID=51031 RepID=W2SNI2_NECAM) HSP 1 Score: 57.4 bits (137), Expect = 1.760e-7 Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 2 Query: 182 VYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHLCTSGQPEV-------TPCQGC 379 VYDV+ L HPGGA V+ + GKDAT +FE+ GH K M K++LIG + + P V TP GC Sbjct: 1 VYDVSKFLNEHPGGAEVIAELAGKDATASFEDVGHS-KDAREMAKEYLIGKVQATSAPTVSSVSEKKTPASGC 72
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A0D1Z9E9_9EURO (Uncharacterized protein n=1 Tax=Cladophialophora immunda TaxID=569365 RepID=A0A0D1Z9E9_9EURO) HSP 1 Score: 60.5 bits (145), Expect = 2.420e-7 Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 2 Query: 80 MDNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHL 337 M +R + ++RAH +++ LW+ + + VY+VTT L HPGGA ++++CGG DAT+AFE+ GH + M+ ++G L Sbjct: 1 MPSRYSLEDVRAHATDDD-LWVVIHNK-------VYNVTTYLEEHPGGAEILKECGGTDATEAFEDVGHSERAWAAMES-LIVGEL 77
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: UPI0018CE1C7B (cytochrome b5 n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE1C7B) HSP 1 Score: 55.8 bits (133), Expect = 8.660e-7 Identity = 39/105 (37.14%), Postives = 53/105 (50.48%), Query Frame = 2 Query: 158 PGWGGVK-AVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHLCTSGQPEVTPCQGCLQARLNIDEKAVPVVERCARCNAEAAEKLC 469 P W +K +VYDV+ +L HPGG ++ DCGGKDATKAF E GH + M K + IG + S + T + NI K P ++ A E + C Sbjct: 19 PCWIIIKGSVYDVSKMLKDHPGGEDIILDCGGKDATKAFNEVGHSTDAMQDM-KLYKIG-VVVSDNVKTTNSSPVIN---NISTKVEPQQQKSAPAEKEGFKLFC 118
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A7S4V5J3_9DINO (Peptidylprolyl isomerase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V5J3_9DINO) HSP 1 Score: 58.5 bits (140), Expect = 1.250e-6 Identity = 27/52 (51.92%), Postives = 31/52 (59.62%), Query Frame = 2 Query: 404 EKAVPVVERCARCNAEAAEKLCSRCKMTRYCSRACQQAAWPSHKKTCIQPAQ 559 E+A P C C A LC+RC+ RYCSR+CQQ AWP HK C PAQ Sbjct: 345 EEASPSAPECGACGARC-PLLCTRCRRVRYCSRSCQQRAWPEHKVHCRAPAQ 395
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A1A0HCV0_9ASCO (Outer mitochondrial membrane cytochrome B5 (Fragment) n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HCV0_9ASCO) HSP 1 Score: 54.3 bits (129), Expect = 1.280e-6 Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 2 Query: 95 TESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHL 337 T +E++ H S + LW+ L + VYD T HPGGA V+ DCGG DAT+AFE+ GH K M FL+G + Sbjct: 2 TLAEVKQHGSPDD-LWMILYN-------RVYDFTAFSAQHPGGAEVLFDCGGVDATEAFEDVGHS-KNACEMLAPFLLGRV 73
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A0K0D0W5_ANGCA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0D0W5_ANGCA) HSP 1 Score: 57.8 bits (138), Expect = 1.540e-6 Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 2 Query: 92 ITESELRAHQSEEQGLWLSLSHPGWGGVKA----VYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHLCTSGQPEVTPCQGCL---QARLNI 400 I SE+ H +EE W+ ++ G+ + VYDVTT L HPGGA + + GKDAT AFE+ GH K M +++LIG + + C CL Q R N+ Sbjct: 18 IPMSEVEQHSNEES-CWIIINGKGYPQMYLPLFQVYDVTTFLSEHPGGAEAIMEFAGKDATVAFEDVGHS-KDAGEMTEEYLIG-------AKFSVCSFCLSNLQIRSNL 118
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A7S3V505_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V505_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.600e-6 Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 2 Query: 71 SHEMDNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGHGIKQLMVMDKDFLIGHL 337 S + + IT +E+ H ++E WL + + GG K VYDVTT L HPGGA V+ D G+D+ + FE+ GH ++K L+G L Sbjct: 2 SDKSEKEITMTEVAKHNTQED-CWLVIGNDRTGGPK-VYDVTTYLDDHPGGAEVLLDVSGQDSDEFFEDIGHSKDAREELEK-LLVGVL 87
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Match: A0A7S1YP05_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YP05_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 3.070e-6 Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 2 Query: 83 DNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVVVEDCGGKDATKAFEEGGH 286 + T +++ H + E WL + + GG K VYDVT+ L HPGGA V+ D GGKDA + FE+ GH Sbjct: 40 EKEFTAADVAKHNTAED-CWLIIGNENTGGAK-VYDVTSYLDDHPGGAEVMLDVGGKDADEFFEDIGH 105 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_985.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_985.7.1 >prot_C-australica_Contig_985.7.1 ID=prot_C-australica_Contig_985.7.1|Name=mRNA_C-australica_Contig_985.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=163bp MDNRITESELRAHQSEEQGLWLSLSHPGWGGVKAVYDVTTLLPWHPGGAVback to top mRNA from alignment at C-australica_Contig_985:13851..14681+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_985.7.1 ID=mRNA_C-australica_Contig_985.7.1|Name=mRNA_C-australica_Contig_985.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=831bp|location=Sequence derived from alignment at C-australica_Contig_985:13851..14681+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_985:13851..14681+ >mRNA_C-australica_Contig_985.7.1 ID=mRNA_C-australica_Contig_985.7.1|Name=mRNA_C-australica_Contig_985.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=489bp|location=Sequence derived from alignment at C-australica_Contig_985:13851..14681+ (Chrysoparadoxa australica CS_1217)back to top |