mRNA_C-australica_Contig_985.3.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_985.3.1 vs. uniprot
Match: D7FQA0_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA0_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.360e-25 Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 2 Query: 140 PGYRTIRHGEASIASKILGPEHPTNEDSFASVLDISEELLGEGSPADSIAPLSSFFVVSDGHAGNGVSRMVRDELPKAFALSESFNSLDMPVADSLAGALVGGLKELETKIWDQAARGDPDSSGACLVAVALRGSHLCVANLGDCQALLLPPNGAPVELTK 622
PGY +R S AS L PEHPTNED A V D +L + +P + PL+ F V DGH G+G S+ V + L S + S+D P ++LA A+ G+ +E D + R D+SG C VA+RGS LC AN+GDCQA+L+ GA V L++
Sbjct: 53 PGYPCVRSSTFSSASPFLCPEHPTNEDR-ALVFDDMVSVL-KLAPTGTRGPLACLFGVFDGHGGDGASKFVANHLHHLIGRSAFYESIDYPADEALASAVEEGVASVEQAYTDWSKRSG-DTSGCCACVVAIRGSVLCAANVGDCQAILITDKGAIVSLSR 210
BLAST of mRNA_C-australica_Contig_985.3.1 vs. uniprot
Match: A0A836CMW2_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW2_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 9.430e-10 Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 2 Query: 299 SFFVVSDGHAGNGVSRMVRDELPKAFALSESFNSLDMPVADSLAGALVGGLKELETKIWDQAARGDPDSSGACLVAVALRGSHLCVANLGDCQALL-LPPNGAPVELT 619
S F V DGH G+ S+ + D L + ++S+ + + L GALV LK E K D A + + D SGAC+V H+CVAN+GDC A+L LP + V+L+
Sbjct: 7 SCFAVFDGHGGSRCSQWLADNLEEDLRCADSWRQEGLTLPKRLKGALVQALKRAEYKYLDLAFK-ESDHSGACVVVGLYCEGHVCVANVGDCLAVLYLPGADSHVDLS 113 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_985.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_985.3.1 >prot_C-australica_Contig_985.3.1 ID=prot_C-australica_Contig_985.3.1|Name=mRNA_C-australica_Contig_985.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=214bp MKAPGYRTIRHGEASIASKILGPEHPTNEDSFASVLDISEELLGEGSPADback to top mRNA from alignment at C-australica_Contig_985:7083..7914- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_985.3.1 ID=mRNA_C-australica_Contig_985.3.1|Name=mRNA_C-australica_Contig_985.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=832bp|location=Sequence derived from alignment at C-australica_Contig_985:7083..7914- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_985:7083..7914- >mRNA_C-australica_Contig_985.3.1 ID=mRNA_C-australica_Contig_985.3.1|Name=mRNA_C-australica_Contig_985.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=642bp|location=Sequence derived from alignment at C-australica_Contig_985:7083..7914- (Chrysoparadoxa australica CS_1217)back to top |