mRNA_C-australica_Contig_983.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A835YMG5_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.360e-15 Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 +LP GYPDSV P Y Y+RWQ SMV +SA+GV+STQALLHAVGLG+GA+P Sbjct: 85 ILPAGYPDSVRPGYARYVRWQLSSMVCTSAAGVLSTQALLHAVGLGAGAVP 135
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A835YUA2_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA2_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.710e-14 Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 +LP GYP++V Y Y WQF SMV SSA+GV+STQALLHAVGLGSGAIP Sbjct: 4 ILPAGYPEAVNAGYGSYTGWQFTSMVFSSAAGVLSTQALLHAVGLGSGAIP 54
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: D8LJS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS3_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 3.340e-12 Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 VLP G+P SV P Y Y WQF M AS+A+GVMSTQALL+A+GLG+GA+P Sbjct: 5 VLPSGFPASVHPPYMAYAGWQFTGMAASAAAGVMSTQALLYAMGLGAGALP 55
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A6H5L0I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I8_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.600e-11 Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 VLP G+P SV P Y Y WQF M AS+A+GVMSTQALL+A+G+G GA+P Sbjct: 176 VLPSGFPGSVHPPYMAYAGWQFTGMAASAAAGVMSTQALLYAMGVGVGALP 226
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: M8AEK8_TRIUA (Uncharacterized protein n=2 Tax=Triticum TaxID=4564 RepID=M8AEK8_TRIUA) HSP 1 Score: 63.5 bits (153), Expect = 4.460e-11 Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 +LP GYP SV Y HY W+ + VAS SGV+STQALL+AVGLG GAIP Sbjct: 64 LLPDGYPHSVSSDYLHYSLWRGVQGVASQISGVLSTQALLYAVGLGKGAIP 114
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A5A8CKM9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKM9_CAFRO) HSP 1 Score: 65.1 bits (157), Expect = 5.580e-11 Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 VLP GYP SV PSY Y W + AS+A+GV+S QALLHAVG G+GA+P Sbjct: 87 VLPQGYPVSVAPSYAQYAAWSAVGSTASAAAGVLSMQALLHAVGAGAGAVP 137
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A0D2WSA8_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WSA8_CAPO3) HSP 1 Score: 65.1 bits (157), Expect = 5.600e-11 Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2 Query: 8 LPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 LP GYP SV P+Y Y RWQ + V + +GV+STQALL+AVGLG+GAIP Sbjct: 328 LPKGYPHSVTPNYMGYSRWQAVQSVTGTMTGVLSTQALLYAVGLGAGAIP 377
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: UPI001F5D0A40 (protein root UVB sensitive 1, chloroplastic-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D0A40) HSP 1 Score: 64.3 bits (155), Expect = 1.040e-10 Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 +LP GYP SV Y HY W+ + VAS SGV+STQALL+AVGLG GAIP Sbjct: 198 LLPDGYPHSVSSDYMHYSLWRGVQGVASQISGVLSTQALLYAVGLGKGAIP 248
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A833VEA6_9POAL (Protein root UVB sensitive 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VEA6_9POAL) HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10 Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 +LPHGYP SV Y Y W+ + +AS SGV+STQALL+AVGLG GAIP Sbjct: 196 MLPHGYPYSVSADYMEYSLWRGVQGIASQVSGVLSTQALLYAVGLGKGAIP 246
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: I1IWN3_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IWN3_BRADI) HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10 Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 2 Query: 5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157 +LP GYP+SV Y HY W+ L VAS SGV+STQALL+AVGLG G IP Sbjct: 206 LLPDGYPNSVSSDYLHYSLWRGLQGVASQISGVLSTQALLYAVGLGKGVIP 256 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_983.2.1 >prot_C-australica_Contig_983.2.1 ID=prot_C-australica_Contig_983.2.1|Name=mRNA_C-australica_Contig_983.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=53bp QGATPWVPGQCPPILPTLHAVAVPIYGCFICLRCHVHTGLAACSWSWLGSback to top mRNA from alignment at C-australica_Contig_983:946..1312+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_983.2.1 ID=mRNA_C-australica_Contig_983.2.1|Name=mRNA_C-australica_Contig_983.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=367bp|location=Sequence derived from alignment at C-australica_Contig_983:946..1312+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_983:946..1312+ >mRNA_C-australica_Contig_983.2.1 ID=mRNA_C-australica_Contig_983.2.1|Name=mRNA_C-australica_Contig_983.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=159bp|location=Sequence derived from alignment at C-australica_Contig_983:946..1312+ (Chrysoparadoxa australica CS_1217)back to top |