mRNA_C-australica_Contig_983.12.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: D7FP01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP01_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.720e-35 Identity = 75/142 (52.82%), Postives = 89/142 (62.68%), Query Frame = 1 Query: 10 MFNFLFQGNLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQ 435
MFNFL QG +GE++AP+QS E QLLIAIQNRQ DKI ELLEVK V A +ND+GV P+HMACQ G LVQRLL+ GA+ QG E RNS +AYDVA DH++RQ+LLPLQL+
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 142
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: A0A835YRJ6_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ6_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.100e-32 Identity = 74/160 (46.25%), Postives = 93/160 (58.13%), Query Frame = 1 Query: 10 MFNFLFQGNLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEAPADQGTTTAPAQYDY 489
MFNFLFQGNLG++IAPIQSPEQQLLIAIQNRQ DK ++ + + D GVTP+HMACQ G +EL++RL + G + D + RN+S S YD+A +H+VRQYLLPLQL+AEA +P YDY
Sbjct: 1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSAAASP--YDY 158
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: A0A6H5KTC0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC0_9PHAE) HSP 1 Score: 139 bits (349), Expect = 3.710e-31 Identity = 76/145 (52.41%), Postives = 90/145 (62.07%), Query Frame = 1 Query: 10 MFNFLFQGNLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEA 444
MFNFL QG +GE++AP+QS E QLLIAIQNRQ DKI ELLEVK V A +ND+GV P+HMACQ G LVQRLL+ GA+ E RNS +AYDVA DH++RQ+LLPLQL+AEA
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSYRLTAYDVATDHVIRQFLLPLQLKAEA 145
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: W7TGZ7_9STRA (Serine threonine-protein phosphatase 6 regulatory n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGZ7_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.200e-27 Identity = 70/158 (44.30%), Postives = 99/158 (62.66%), Query Frame = 1 Query: 10 MFNFLFQGNLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVK---RVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANA-NAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEAPADQGTTTA 471
MF FL QG LGEL+AP+++P QQL AI+ +HDK ++LL+ P D PIH ACQ G + ++ +L++ GA+A +A DR GN LH AA+GG +E ++ + G+ RN+ +AYDVA H+VRQ+LLPLQL+AE G+ A
Sbjct: 22 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGD--ALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEPEPAAGSLAA 177
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: A0A4D9DC57_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC57_9STRA) HSP 1 Score: 124 bits (310), Expect = 8.170e-27 Identity = 69/158 (43.67%), Postives = 97/158 (61.39%), Query Frame = 1 Query: 10 MFNFLFQGNLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVK---RVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANA-NAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEAPADQGTTTA 471
MF FL QG LGEL+AP+++P QQL AI+ +HDK ++LL+ P D PIH ACQ G + ++ +L++ GA+ +A DR GN LH AA+GG +E ++ + G+ RN+ +AYDVA H+VRQ+LLPLQL+ E GT A
Sbjct: 1 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGD--ALPIHTACQAGNQMMIDKLMEMGADVRSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRTEPEPAAGTLAA 156
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: M4BI20_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BI20_HYAAE) HSP 1 Score: 103 bits (257), Expect = 3.090e-20 Identity = 74/218 (33.94%), Postives = 98/218 (44.95%), Query Frame = 1 Query: 10 MFNFLFQG----NLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEAPAD------QGTTTA-------------PAQYDYGAPPQHGQPMHQAHQQPAQQFAPSAVDALMLPGGP 594
MFNF+ + NLGEL+AP +PEQ+L AI+ DK+ LL+ V N+ G PIH A G +++ LL + NA N+ LH+AA E ++ V G P RN G +AYDVA +RQYLLPLQ + E PA G T + P DY P H Q P +A + + GGP
Sbjct: 1 MFNFIAEKLNVKNLGELLAPTLTPEQELHAAIEQGLTDKVLHLLDEGNVDPNAKNEAGNLPIHTAAYHGHVDILTILLTHKVDVNATCPRQNSPLHYAAAQSRDEAVRFLVDNGANPALRNRQGRTAYDVAKGDNIRQYLLPLQFRHEDPAQVASQLPPGITPSVDPMAPRPVIAPPPLSEDYSTMPSHSMMAASPQQMPQNNLYAAATHSAIPRGGP 218
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: A0A662X0F1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0F1_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 7.910e-19 Identity = 57/147 (38.78%), Postives = 74/147 (50.34%), Query Frame = 1 Query: 34 NLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEAPADQGTTTAP 474
NLGEL+AP +PEQ+L AI+ DK LL+ V ND G PIH A G+ ++ LL + N + N+ LHFAA ++ V G P RN SG + YDVA +RQ+LLPLQ + E PA P
Sbjct: 13 NLGELLAPTLTPEQELHAAIEQGMEDKFVRLLDEMNVDPNAKNDAGNLPIHTAAYYGRVSFLEILLAHNVDINVLCPRENSALHFAAAQSREAAVKFLVNNGANPAKRNRSGRTPYDVAKGDNIRQFLLPLQFRHEDPAQAAAMLPP 159
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: A0A7S3JRB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRB0_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.410e-18 Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 31 GNLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPA-GCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVD-RAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEA 444
+GE++AP+Q+ Q+L I+I+ R + HELL V A G + +TP+H+AC + V+ LL GA+ N D RA T LH ARGG + + V +G RN+ + YDVA D +RQ+LLPLQL+AEA
Sbjct: 14 NRIGEVVAPVQNENQELFISIRRRDWPRTHELLSSPNVDALGKNGSVDMTPLHVACAEDFVQCVEYLLVNGADVNVRDTRAHETPLHHGARGGHSRVCRLLVERGASLVARNARNQTPYDVAKDLSLRQWLLPLQLRAEA 153
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: A0A8K1CHA8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA8_PYTOL) HSP 1 Score: 91.3 bits (225), Expect = 3.790e-16 Identity = 54/159 (33.96%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 10 MFNFLFQG----NLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEAPADQGTTTAP 474
MF+F+ NLGE++AP +PEQ+L AI+ DK LL+ V +ND G PIH A G+ +++ LL RG + N + NT ++ + P RN +G + YD+A +RQYLLPLQ + E P + T P
Sbjct: 1 MFSFIADKLNVKNLGEMLAPTYTPEQELHAAIEQGMEDKFLSLLDEHNVSPHATNDGGNMPIHTAAYYGRVRMLETLLVRGIDVNTLGPRDNTXXXXXXXXXXXXXXKFLINNNANPAKRNRNGRTPYDIAKGDGLRQYLLPLQFRHEDPNEAATMLPP 159
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Match: A0A2D4BKW5_PYTIN (Guanylate kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKW5_PYTIN) HSP 1 Score: 87.8 bits (216), Expect = 1.530e-14 Identity = 51/150 (34.00%), Postives = 72/150 (48.00%), Query Frame = 1 Query: 10 MFNFLFQG----NLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSNDKGVTPIHMACQMGQRELVQRLLDRGANANAVDRAGNTVLHFAARGGSVEMTQWAVMQGIRPETRNSSGASAYDVAADHMVRQYLLPLQLQAEAP 447
MFNF+ NLGE++AP +PEQ+L AI+ DK LL+ ++V C N G PIH A G+ +++ L+ RG + N + N P RN +G + YD+A +RQYLLPLQ + E P
Sbjct: 1 MFNFIADKLNVKNLGEMLAPTYTPEQELHAAIEEGLQDKFFRLLDEQQVSPHCPNAGGNMPIHTASYYGRIAMIESLISRGIDVNTLGPRDNXXXXXXXXXXXXXXXXXXXXXXANPAKRNRNGKTPYDIAKGDSIRQYLLPLQFRHEDP 150 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_983.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_983.12.1 >prot_C-australica_Contig_983.12.1 ID=prot_C-australica_Contig_983.12.1|Name=mRNA_C-australica_Contig_983.12.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=540bp MFNFLFQGNLGELIAPIQSPEQQLLIAIQNRQHDKIHELLEVKRVPAGCSback to top mRNA from alignment at C-australica_Contig_983:8352..12118+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_983.12.1 ID=mRNA_C-australica_Contig_983.12.1|Name=mRNA_C-australica_Contig_983.12.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3767bp|location=Sequence derived from alignment at C-australica_Contig_983:8352..12118+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_983:8352..12118+ >mRNA_C-australica_Contig_983.12.1 ID=mRNA_C-australica_Contig_983.12.1|Name=mRNA_C-australica_Contig_983.12.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1620bp|location=Sequence derived from alignment at C-australica_Contig_983:8352..12118+ (Chrysoparadoxa australica CS_1217)back to top |