mRNA_C-australica_Contig_982.9.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Match: A0A6A3J6A9_9STRA (FAM194 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J6A9_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.830e-8 Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 1 Query: 1 IGSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKPGKQVRRVDAARFGSYVATHASTKRLLLVVAVSGGDCTGSCKAVVAAEVLNGSLQEEDNIDMVGAAGSGICLGCTPTAANMVVRLSQVVVDVGGSNALAERYNLRSVPSFMIMMSGAPLWSGQAGGAPLKISP 528 +GS EI + + ENP LPR+ +L ASGRY++E GGT+ G+++ + ++ S++ + L++V + D S A E + L E T AA RL V D+ S AL +RY + +VP+F++ + GG L+++P Sbjct: 298 LGSVEIHKMITQENPGLPRTGSLTNASGRYSQELQVAGGGTKPVGERLTTISGSKLDSFLREKCTNDELVVVACLRADD-RHSRAAESMLEQVQVILSERKR---------------TTAAAENKCRL--VKCDLAESAALGDRYQIHAVPTFLMFYDSRLVHVSSLGGIALRVAP 455
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Match: A0A6A4CSC1_9STRA (FAM194 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CSC1_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.960e-8 Identity = 49/176 (27.84%), Postives = 81/176 (46.02%), Query Frame = 1 Query: 1 IGSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKPGKQVRRVDAARFGSYVATHASTKRLLLVVAVSGGDCTGSCKAVVAAEVLNGSLQEEDNIDMVGAAGSGICLGCTPTAANMVVRLSQVVVDVGGSNALAERYNLRSVPSFMIMMSGAPLWSGQAGGAPLKISP 528 +GS EI + + ENP LPR+ +L ASGRY++E GGT+ G+++ + ++ S++ + L++V + D S A E + L E T AA RL V D+ S AL +RY + +VP+F++ + GG L+++P Sbjct: 298 LGSVEIHKMITQENPGLPRTGSLTNASGRYSQELQVAGGGTKPVGERLTTISGSKLDSFLREKCTNDELVVVACLRADD-RHSRAAESMLEQVQVILSERKR---------------TTAAAENKCRL--VKCDLAESAALGDRYQIHAVPTFLMFYDSRLVHVSSLGGIALRVAP 455
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Match: A0A329SKN3_9STRA (FAM194 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SKN3_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.660e-7 Identity = 49/178 (27.53%), Postives = 84/178 (47.19%), Query Frame = 1 Query: 4 GSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKPGKQVRRVDAARFGSYVATHASTKRLLLVVAVSGGDCTGSCKAVVAAEVLNGSLQ---EEDNIDMVGAAGSGICLGCTPTAANMVVRLSQVVVDVGGSNALAERYNLRSVPSFMIMMSGAPLWSGQAGGAPLKISP 528 GS EI + + ENP LPR+ ++ ASGRY++E GGT+ G+++ + ++ ++ + L++V + D + AAE +Q E ++ AAG C RL V D+ S ALA+RY + +VP+F++ + GG L+++P Sbjct: 299 GSVEIHKMIAQENPGLPRTGSITNASGRYSQELQVAGGGTKSVGERLTTIRGSKLDLFLREQFANDELVVVACLRADD-----RQSRAAEAKLEQIQLIISERKLNPATAAGEKKC------------RL--VKCDLTESPALADRYRIHAVPTFLMFYDSRLVNVSSLGGLALRVAP 457
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Match: G4YJQ8_PHYSP (FAM194 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YJQ8_PHYSP) HSP 1 Score: 58.2 bits (139), Expect = 9.060e-7 Identity = 41/158 (25.95%), Postives = 73/158 (46.20%), Query Frame = 1 Query: 1 IGSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKPGKQVRRVDAARFGSYVATHASTKRLLLVVAVSGGDCTGSCKAVVAAEV---LNGSLQEEDNIDMVGAAGSGICLGCTPTAANMVVRLSQVVVDVGGSNALAERYNLRSVPSFMI 465 +GS EI + + ENP LPR+ +L ASGRY++E GGT+ G+ + + ++ S++ + L++V + D + +V L+ ++ + PT A + V D+ S ALA RY + +VP+F++ Sbjct: 279 LGSVEIHKMITQENPGLPRTGSLTNASGRYSQELQVAGGGTKPVGEHLATISGSKLDSFLREKCANDELVVVACLRADDRHSRAAEAMLKQVQLILSKRMRNPER----------------PTTAAADNKCRLVKCDLAESGALAARYQIHAVPTFLM 420
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Match: W2PHG6_PHYPN (FAM194 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PHG6_PHYPN) HSP 1 Score: 57.8 bits (138), Expect = 1.400e-6 Identity = 45/175 (25.71%), Postives = 77/175 (44.00%), Query Frame = 1 Query: 4 GSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKPGKQVRRVDAARFGSYVATHASTKRLLLVVAVSGGDCTGSCKAVVAAEVLNGSLQEEDNIDMVGAAGSGICLGCTPTAANMVVRLSQVVVDVGGSNALAERYNLRSVPSFMIMMSGAPLWSGQAGGAPLKISP 528 GS EI + + ENP LPR+ L ASGRY++E GGT+ G+++ + ++ Y+ S L++V + D ++ + + N TAA RL V D+ S AL +RY + +VP+F++ + GG ++++P Sbjct: 273 GSVEIHKMIAQENPGLPRTGYLTNASGRYSQELQVAGGGTKSAGERLISIHGSKLDLYLREQCSNDELVVVACLRSDDRQSRAAEAKLEQIQMILSKRKQN---------------PATAAEHKCRL--VKCDLVESPALVDRYRIHAVPTFLMFYDSRLVNVSSLGGLAVRVTP 430
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Match: A0A833W6C5_PHYIN (FAM194 protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W6C5_PHYIN) HSP 1 Score: 57.0 bits (136), Expect = 2.570e-6 Identity = 46/176 (26.14%), Postives = 82/176 (46.59%), Query Frame = 1 Query: 4 GSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKP-GKQVRRVDAARFGSYVATHASTKRLLLVVAVSGGDCTGSCKAVVAAEVLNGSLQEEDNIDMVGAAGSGICLGCTPTAANMVVRLSQVVVDVGGSNALAERYNLRSVPSFMIMMSGAPLWSGQAGGAPLKISP 528 GS EI + + ENP LPR+ +L ASGRY++E G + K G+++ + ++ ++ H ++ L++V + D +AV A + E N + + S L V D+ S ALA+RY +R+VP+F++ + GG ++++P Sbjct: 272 GSVEIHRMIAQENPGLPRTGSLTNASGRYSQELRVAGGNSTKSVGERLATISGSKLDPFLREHCASDELVVVACLRADD--RQSRAVEAKLEQIQLILSERNQNPATISKSNCRL---------------VKCDLAESPALADRYRVRAVPTFLMFYDSRLVHVSSLGGLAIRVAP 430
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Match: A0A2P4Y521_9STRA (FAM194 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y521_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 4.000e-5 Identity = 44/173 (25.43%), Postives = 80/173 (46.24%), Query Frame = 1 Query: 1 IGSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKPGKQVRRVDAARFGSYVATHASTKRLLLVVAVSGGDCTGSCKAVVAAEV-LNGSLQEEDNIDMVGAAGSGICLGCTPTAANMVVRLSQVVVDVGGSNALAERYNLRSVPSFMIM---------MSGAPLW 489 +GS EI + + ENP L R+ L ASGRY+++ G T+ G+++ V ++ +++ + L++V + D + ++ L S +E++ +++ A G+ L V D+ S ALA RY + +VP+F++ MSG LW Sbjct: 279 LGSVEIHKMITQENPGLVRTGYLTNASGRYSQQLQVSGGDTKSVGERLITVAGSKLDTFLREKCADNELVVVACLRADDRQSRAAEAMLEQIQLVLSEREQNPLNITAATGNKCRL---------------VKCDLAESPALANRYRIHAVPTFLMYENLCVIADTMSGYLLW 436 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_982.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_982.9.1 >prot_C-australica_Contig_982.9.1 ID=prot_C-australica_Contig_982.9.1|Name=mRNA_C-australica_Contig_982.9.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=176bp IGSQEISQQLHLENPELPRSAALQQASGRYAREYSNPTGGTEKPGKQVRRback to top mRNA from alignment at C-australica_Contig_982:16866..17600+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_982.9.1 ID=mRNA_C-australica_Contig_982.9.1|Name=mRNA_C-australica_Contig_982.9.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=735bp|location=Sequence derived from alignment at C-australica_Contig_982:16866..17600+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_982:16866..17600+ >mRNA_C-australica_Contig_982.9.1 ID=mRNA_C-australica_Contig_982.9.1|Name=mRNA_C-australica_Contig_982.9.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=528bp|location=Sequence derived from alignment at C-australica_Contig_982:16866..17600+ (Chrysoparadoxa australica CS_1217)back to top |