mRNA_C-australica_Contig_982.2.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: D7FZR3_ECTSI (Pentapeptide repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR3_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 2.170e-19 Identity = 94/160 (58.75%), Postives = 104/160 (65.00%), Query Frame = 2 Query: 158 TLAGVLLSFAPLCTPPPTALAISGGGLDYAGLNLKEKDFSKGSYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFEGVGDISGVDFTTALMQPRTQRALCQRPDAKGTNPATGVDTRESLMC 637 TLA VL++ PL P A+AISGGGLDYAGLNL +D SKG YK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + VGDISG DFT AL++ + LC RPDAKGTNP TG DTR+SL+C Sbjct: 76 TLAAVLVAGVPLLVNPSPAVAISGGGLDYAGLNLTGQDLSKGKYKSKDFSGSIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEADLEGTIMTNAVATGSYFGNNMNNVGDISGADFTDALIRKDVAKILCARPDAKGTNPTTGTDTRDSLLC 235
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A6H5KFC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC5_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 8.970e-19 Identity = 102/160 (63.75%), Postives = 111/160 (69.38%), Query Frame = 2 Query: 158 TLAGVLLSFAPLCTPPPTALAISGGGLDYAGLNLKEKDFSKGSYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFEGVGDISGVDFTTALMQPRTQRALCQRPDAKGTNPATGVDTRESLMC 637 TLA VL++ PL P AISGGGLDYAGLNL +D S G YK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + VGDISG DFT AL++ + LC RPDAKGTNP TG DTR+SL+C Sbjct: 19 TLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLEGTIMTNAVATGSYFGNNMNNVGDISGADFTDALIRKDVAKILCARPDAKGTNPTTGTDTRDSLLC 178
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: UPI00096B5543 (dynactin subunit 6-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B5543) HSP 1 Score: 74.7 bits (182), Expect = 4.820e-12 Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = -1 Query: 1414 LHEWPVVEERAVITNESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGN-ITAQSGTVLYYDSNEVDAFRVNIPPHN 1713 +H P + R +++ M+IG+ N FEV C + S+KIG+ N F+ KC +GP+V V DGCTVGAG +LTG I ++ + D D F PP+N Sbjct: 59 IHRLPFDQPR----RDTTPVMIIGSYNTFEVDCMIESSKIGNDNLFESKCYVGPKVTVTDGCTVGAGCMLTGEQILPENIVITGSDCIRRDGFEA--PPNN 153
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A6J2TQ95_DROLE (Dynactin subunit 6 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2TQ95_DROLE) HSP 1 Score: 73.6 bits (179), Expect = 2.150e-11 Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = -1 Query: 1465 CERGS*YPRLMLGLGLAV*YIPAAPSSAKVGSS*SCLHEWPVVEERAVITN--------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 1821 CE + + + G V PS+ + + L E +VEE A I + ++S + IGA N+FEVGC V +A+IGD N F+ KC +G V V GC VGAG+ L T++Y Sbjct: 16 CEESTLNGDITISSGCVV-----HPSATIIAEAPIVLGENCIVEEYATIAHRLKDGAASDASNTLHIGANNVFEVGCTVEAARIGDKNVFESKCFVGSGVTVSSGCVVGAGIQLRTAQVLPENTIVY 137
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A662WJS5_9STRA (Dynactin subunit 6 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJS5_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.990e-10 Identity = 43/118 (36.44%), Postives = 59/118 (50.00%), Query Frame = -1 Query: 1468 CERGS*YPRLMLGLGLAV*YIPAAPSSAKVGSS*SCLHEWPVVEERAVITNESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVL 1821 CE + +G AV P A A G L E VE+RAV++N SSE M IG NLFE GC V+S ++GD N F+PK V+ C +G+G+V+ ++L Sbjct: 17 CEDAELLGAVSIGERCAV--HPGAALRALAGPI--VLGERSFVEDRAVLSNISSEAMAIGRENLFESGCVVQSQRVGDGNHFEPKAETRTGSVIGSNCLIGSGVVVVEGENVPDNSIL 130
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A7S0UFP4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UFP4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.430e-10 Identity = 95/162 (58.64%), Postives = 106/162 (65.43%), Query Frame = 2 Query: 152 AATLAGVLLSFAPLCTPPPTALAISGGGLDYAGLNLKEKDFSKGSYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFEGVGDISGVDFTTALMQPRTQRALCQRPDAKGTNPATGVDTRESLMC 637 A T A +LL+ + T A A+SGGGLD+AGL++ +DFSKG YK XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX G DFT A P+T +C RPD KGTNP TGVDTR+S MC Sbjct: 111 ATTAAALLLASS---TFVQAAFAVSGGGLDFAGLDISNQDFSKGDYKGKDFTQVLARNTNFAGSNLXXXXXXXXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGADFTDAQFPPKTLALMCDRPDMKGTNPTTGVDTRDSAMC 269
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A1L8EDD9_HAEIR (Dynactin subunit 6 n=2 Tax=Haematobia irritans TaxID=7368 RepID=A0A1L8EDD9_HAEIR) HSP 1 Score: 68.9 bits (167), Expect = 1.030e-9 Identity = 49/147 (33.33%), Postives = 72/147 (48.98%), Query Frame = -1 Query: 1441 RRLPCERGS*YPRLMLGLGLAV*YIPAAPSSAKVGSS*SCLHEWPVVEERAVITNESSED---------------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY-YDSNEVDA 1833 R + CE + + G + P+A A+ G L E +VEE A I +E+ ++IGA N+FEVGC V + KIGD N F+ K +GP+V+V +GC VGA + L TV+Y DS++ +A Sbjct: 14 RSIVCEESILRGDITISQGCVI--HPSASILAEAGPI--ILGENCIVEEYATIAYRLTEEQKLLKETGKFETAPTLVIGASNVFEVGCLVEAHKIGDKNVFECKSYVGPDVIVTNGCIVGAAVSLKCKQQLPESTVIYGRDSSQREA 156
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A1B6JNV4_9HEMI (Dynactin subunit 6 (Fragment) n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6JNV4_9HEMI) HSP 1 Score: 66.6 bits (161), Expect = 2.200e-9 Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = -1 Query: 1501 LHEWPVVEERAVITNESSED--------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLT 1713 + E ++EE+ I S E + IG N+FEVGC + + IGD N F+PKC +GP+VV+ +GC +GAG +T Sbjct: 6 IGENNIIEEQTSIIYTSEEKTNIENPVPLTIGVNNVFEVGCEIHAKTIGDHNVFEPKCYVGPDVVIGNGCIIGAGCRVT 84
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A7S2SQY3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY3_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.030e-9 Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 2 Query: 491 SFEGVGDISGVDFTTALMQPRTQRALCQRPDAKGTNPATGVDTRESLMC 637 + + G+I G DFT ++M+ Q+ LC+RPDAKGTNP TGVDTR+SL C Sbjct: 189 TLDQAGNIEGADFTDSIMRETMQKKLCERPDAKGTNPKTGVDTRDSLFC 237
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Match: A0A662XXR0_9STRA (Dynactin subunit 6 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXR0_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 4.430e-9 Identity = 43/118 (36.44%), Postives = 59/118 (50.00%), Query Frame = -1 Query: 1468 CERGS*YPRLMLGLGLAV*YIPAAPSSAKVGSS*SCLHEWPVVEERAVITNESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVL 1821 CE + +G AV P A A G L E VE+RAV++N SSE M IG NLFE GC V+S ++GD N F+PK V+ C +G+G+V+ ++L Sbjct: 17 CEDAELLGSVSIGERCAV--HPGASLRALAGPI--VLGERSFVEDRAVLSNASSEVMAIGRENLFESGCLVQSQRVGDGNHFEPKAEARAGSVIGSNCLIGSGVVVAEGENVPDNSIL 130 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_982.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_982.2.1 >prot_C-australica_Contig_982.2.1 ID=prot_C-australica_Contig_982.2.1|Name=mRNA_C-australica_Contig_982.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=211bp MKGAFAFSLLLAWGVESFFTGPSHLHAGPGVATNLSMAGGSAAQRAAAATback to top mRNA from alignment at C-australica_Contig_982:2468..5649+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_982.2.1 ID=mRNA_C-australica_Contig_982.2.1|Name=mRNA_C-australica_Contig_982.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3182bp|location=Sequence derived from alignment at C-australica_Contig_982:2468..5649+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_982:2468..5649+ >mRNA_C-australica_Contig_982.2.1 ID=mRNA_C-australica_Contig_982.2.1|Name=mRNA_C-australica_Contig_982.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=633bp|location=Sequence derived from alignment at C-australica_Contig_982:2468..5649+ (Chrysoparadoxa australica CS_1217)back to top |