mRNA_C-australica_Contig_982.1.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: A0A6J2TQ95_DROLE (Dynactin subunit 6 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2TQ95_DROLE) HSP 1 Score: 110 bits (274), Expect = 3.880e-24 Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 2 Query: 101 AEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN--------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
AE ++ I +V EE+ + G++ I GC+VHP TI+++ I+ GE+C+VEE A I + ++S + IGA N+FEVGC V +A+IGD N F+ KC +G V V GC VGAG+ L T++Y
Sbjct: 3 AESDIKIMPKSVVCEESTLNGDITISSGCVVHPSATIIAEA--PIVLGENCIVEEYATIAHRLKDGAASDASNTLHIGANNVFEVGCTVEAARIGDKNVFESKCFVGSGVTVSSGCVVGAGIQLRTAQVLPENTIVY 137
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: B4M940_DROVI (Dynactin subunit 6 n=8 Tax=Drosophila TaxID=32281 RepID=B4M940_DROVI) HSP 1 Score: 107 bits (267), Expect = 3.510e-23 Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 104 EDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED--------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
E+ + I +V EE+ ++G++ GC+VHP T++++ G IIFGE+C+VEE A I + S+ + IG+ N+FEVGC V +A+IGD N F+ KC +G V V GC +GAG+ + T++Y
Sbjct: 4 ENNIKIFPKSVVCEESTLRGDITFSAGCVVHPSATVIAEAG-PIIFGENCIVEEYATIAHRLSDGASWDANNILSIGSHNVFEVGCTVEAARIGDKNVFESKCFVGKGVTVSSGCVIGAGIRMHTAQVLPENTIVY 138
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: UPI0018CE2538 (dynactin subunit 6 isoform X1 n=2 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE2538) HSP 1 Score: 107 bits (267), Expect = 3.800e-23 Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 2 Query: 98 MAEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNE------------SSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
MA +++ + +V E++ +QG++ I PGC++HP TI+++ G II GE+C+VEE A I S+ ++IGA N+FEVGC V + +IG+ N F+ KC +GP V + GC +GAG+ + TV+Y
Sbjct: 1 MAGNDIKVMAKSIVCEDSILQGDITILPGCVIHPSVTIIAEAG-PIILGENCIVEEYASIVYRQQMKTSSTGNASSATPLVIGANNVFEVGCTVEAHRIGEKNVFECKCYVGPNVGISSGCIIGAGVQIESAQDLPENTVIY 141
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: UPI00096B5543 (dynactin subunit 6-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B5543) HSP 1 Score: 106 bits (264), Expect = 4.410e-23 Identity = 58/145 (40.00%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 134 LVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED---------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGN-ITAQSGTVLYYDSNEVDAFRVNIPPHN 538
LV EE+ ++G++ IG ++HP TI+++ G II G+ C++EE+ I + D M+IG+ N FEV C + S+KIG+ N F+ KC +GP+V V DGCTVGAG +LTG I ++ + D D F PP+N
Sbjct: 12 LVCEESKLRGDITIGAETVIHPHVTIIAEAG-PIIIGDHCLIEEKTQIIHRLPFDQPRRDTTPVMIIGSYNTFEVDCMIESSKIGNDNLFESKCYVGPKVTVTDGCTVGAGCMLTGEQILPENIVITGSDCIRRDGFEA--PPNN 153
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: A0A6P4JGM0_DROKI (Dynactin subunit 6 n=11 Tax=melanogaster group TaxID=32346 RepID=A0A6P4JGM0_DROKI) HSP 1 Score: 105 bits (261), Expect = 2.260e-22 Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = 2 Query: 101 AEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN--------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
+E+ + I +V EE++++G++ GC+VHP T+++ G II GE+C++EE A I + +++ + IG N+FEVGC V +A+IGD N F+ KC +G V V GC VGAG+ + + T++Y
Sbjct: 3 SENRIKIFPKSVVCEESNLRGDITFSSGCVVHPSATVIADAG-PIIIGENCIIEEYATIAHRLEPGASWDANNILSIGTHNVFEVGCNVEAARIGDKNVFESKCFVGRGVTVTSGCVVGAGIKMLTSQRLSENTIVY 138
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: U5EX38_9DIPT (Dynactin subunit 6 (Fragment) n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5EX38_9DIPT) HSP 1 Score: 104 bits (259), Expect = 4.540e-22 Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 2 Query: 104 EDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN-------------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
++++ I +V E+++++G++ I GC++HP TI+++ G II GE+C+VEE A I +S ++IGA NLFEVGC V + KIG+ N F+ K + +VVV +GC +GAG L G T TV+Y
Sbjct: 2 KNDIKIFPRSIVCEDSNLRGSITISSGCVIHPSVTIIAESG-PIILGENCIVEEYAKIIYRIPKQHPLYSDDPDSIPPLIIGADNLFEVGCRVEALKIGERNIFEIKSYVSSDVVVTNGCVIGAGCHLIGEQTLPEKTVIY 141
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: A0A1L8EDD9_HAEIR (Dynactin subunit 6 n=2 Tax=Haematobia irritans TaxID=7368 RepID=A0A1L8EDD9_HAEIR) HSP 1 Score: 103 bits (258), Expect = 7.230e-22 Identity = 56/151 (37.09%), Postives = 89/151 (58.94%), Query Frame = 2 Query: 107 DEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED---------------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY-YDSNEVDA 511
+++ I +V EE+ ++G++ I GC++HP +I+++ G II GE+C+VEE A I +E+ ++IGA N+FEVGC V + KIGD N F+ K +GP+V+V +GC VGA + L TV+Y DS++ +A
Sbjct: 7 NDIKIMNRSIVCEESILRGDITISQGCVIHPSASILAEAG-PIILGENCIVEEYATIAYRLTEEQKLLKETGKFETAPTLVIGASNVFEVGCLVEAHKIGDKNVFECKSYVGPDVIVTNGCIVGAAVSLKCKQQLPESTVIYGRDSSQREA 156
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: Q9VIZ1_DROME (Dynactin subunit 6 n=10 Tax=melanogaster group TaxID=32346 RepID=Q9VIZ1_DROME) HSP 1 Score: 103 bits (257), Expect = 7.810e-22 Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 2 Query: 101 AEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN--------ESSEDMLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
+E+ + I +V EE+ ++G++ GC+VHP T+++ G II GE+C++EE A + + + + + IG N+FEVGC V +AKIGD N F+ KC +GP V V GC G+ + G+ T++Y
Sbjct: 3 SENRIKILPKAVVCEESSLRGDITFSSGCVVHPSATVIADAG-PIIIGENCIIEEYATVAHRLEPGAVWDVNNILSIGTHNVFEVGCQVEAAKIGDKNVFESKCYVGPGVTVSSGCVXXXGIKIHGSQRLPENTIVY 138
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: W7XBT6_TETTS (Dynactin subunit 6 n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=W7XBT6_TETTS) HSP 1 Score: 102 bits (255), Expect = 1.060e-21 Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 2 Query: 134 LVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITNESSED------MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLYYD 493
++S++++I GNV+ G GCI+HP CTI+++GG IIFG+ ++EER I N+ S+D M IG+ NLFEVG + ++ IG+ N F+P+ S+ + + D CT+GA + L + + Y D
Sbjct: 12 ILSQKSEILGNVKFGKGCIIHPNCTILAEGGD-IIFGDYNIIEERVSIVNKKSKDPAKNKNMFIGSYNLFEVGSKIDTSDIGNMNHFEPRSSVEQDCQIKDKCTIGACVKLPQGTIIEDKKIYYPD 136
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Match: B3MNN7_DROAN (Dynactin subunit 6 n=2 Tax=ananassae subgroup TaxID=32347 RepID=B3MNN7_DROAN) HSP 1 Score: 103 bits (256), Expect = 1.090e-21 Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 2 Query: 134 LVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEDCVVEERAVITN-----ESSED---MLIGAGNLFEVGCCVRSAKIGDFNRFQPKCSIGPEVVVCDGCTVGAGLVLTGNITAQSGTVLY 487
+V EE+ ++G++ GC+VHP T++++ G II GE+C+VEE A I + E +D + IG N+FEVGC V +A+IGD N F+ KC +G V V +GC VGAG+ + TV+Y
Sbjct: 15 VVCEESKLRGDITFSSGCVVHPSATVIAEAG-PIIIGENCIVEEYATIAHRLAPGEEYDDNNILSIGTQNVFEVGCNVEAARIGDKNVFESKCFVGKGVSVSNGCVVGAGIKMIARQHLPENTVVY 139 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_982.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_982.1.1 >prot_C-australica_Contig_982.1.1 ID=prot_C-australica_Contig_982.1.1|Name=mRNA_C-australica_Contig_982.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=180bp MAEDEVVIGEGCLVSEEADIQGNVRIGPGCIVHPCCTIVSQGGGAIIFGEback to top mRNA from alignment at C-australica_Contig_982:2468..5649- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_982.1.1 ID=mRNA_C-australica_Contig_982.1.1|Name=mRNA_C-australica_Contig_982.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3182bp|location=Sequence derived from alignment at C-australica_Contig_982:2468..5649- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_982:2468..5649- >mRNA_C-australica_Contig_982.1.1 ID=mRNA_C-australica_Contig_982.1.1|Name=mRNA_C-australica_Contig_982.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=540bp|location=Sequence derived from alignment at C-australica_Contig_982:2468..5649- (Chrysoparadoxa australica CS_1217)back to top |