mRNA_C-australica_Contig_98.20.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.20.1
Unique NamemRNA_C-australica_Contig_98.20.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:63222..66712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVS8
PFAMsAnk_2,Ank_3,Ank_4
Model size2111
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons10
Evalue3.88e-14
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_002000.1
Descriptionspectrin binding
Cds size630
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.20.1prot_C-australica_Contig_98.20.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 63791..65103 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.534849-UTR-C-australica_Contig_98:63221..633351682588847.534849-UTR-C-australica_Contig_98:63221..63335Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 63222..63335 +
1682588847.5466795-UTR-C-australica_Contig_98:63418..634571682588847.5466795-UTR-C-australica_Contig_98:63418..63457Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 63419..63457 +
1682588847.5567353-UTR-C-australica_Contig_98:63628..637901682588847.5567353-UTR-C-australica_Contig_98:63628..63790Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 63629..63790 +
1682588847.611966-UTR-C-australica_Contig_98:65103..654221682588847.611966-UTR-C-australica_Contig_98:65103..65422Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 65104..65422 +
1682588847.6204884-UTR-C-australica_Contig_98:65530..662571682588847.6204884-UTR-C-australica_Contig_98:65530..66257Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 65531..66257 +
1682588847.6287048-UTR-C-australica_Contig_98:66506..665621682588847.6287048-UTR-C-australica_Contig_98:66506..66562Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 66507..66562 +
1682588847.6371753-UTR-C-australica_Contig_98:66648..667121682588847.6371753-UTR-C-australica_Contig_98:66648..66712Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 66649..66712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588847.5672805-CDS-C-australica_Contig_98:63790..639271682588847.5672805-CDS-C-australica_Contig_98:63790..63927Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 63791..63927 +
1682588847.5767584-CDS-C-australica_Contig_98:64109..642271682588847.5767584-CDS-C-australica_Contig_98:64109..64227Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 64110..64227 +
1682588847.586844-CDS-C-australica_Contig_98:64405..644551682588847.586844-CDS-C-australica_Contig_98:64405..64455Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 64406..64455 +
1682588847.595666-CDS-C-australica_Contig_98:64535..646901682588847.595666-CDS-C-australica_Contig_98:64535..64690Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 64536..64690 +
1682588847.6038864-CDS-C-australica_Contig_98:64933..651031682588847.6038864-CDS-C-australica_Contig_98:64933..65103Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 64934..65103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.20.1

>prot_C-australica_Contig_98.20.1 ID=prot_C-australica_Contig_98.20.1|Name=mRNA_C-australica_Contig_98.20.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=210bp
MLVINTSGMSALSFSSTAKVREILTLGLRRELQMLMQVQGEADKPRLGSL
MSVLAEAELMEDDKAPQQLDMRTCAHMAAIAGLPEVLNMLVKQDFGPGTS
SRWKDVNGWTPLHHCAASSSNAHRECAVILLGSVRGGGGIGDLTHSGKSA
LHLACGGASGDEKSRTAMISLLIQHGASVNQVDGSGLQPLHAAAMAGSPM
LDISLSPSH*
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mRNA from alignment at C-australica_Contig_98:63222..66712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.20.1 ID=mRNA_C-australica_Contig_98.20.1|Name=mRNA_C-australica_Contig_98.20.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3491bp|location=Sequence derived from alignment at C-australica_Contig_98:63222..66712+ (Chrysoparadoxa australica CS_1217)
GGGGGCCATCAGGGGACAAGAGCTTCAGCCTGGGACTCAGCCGCACGTTC
CATAGACCCACTGTCCCCACTGGGAAGGATAGTGATGCGTATTTAGCAGG
CTTTGTGGATGCAGGTCACTGAATACTTGACCTGAACTGAACTGAACTGA
ATTGAACTGAACTGACCCAGGGGTATGTCCCTTAATTCTTGTCTCAGGCT
GCTTGAGAGAGGCTCGTGTGGCTGTGCTGGACCTCGGTAGGTATTCGTTT
GTGGTCAGACCTTGGCACAGCACCCTGCTCATCACTCTTTTGCCCTGCAC
AAAATTGATTGGGTCCATTGCCTCTGTTGCCTTTCGCCCTAGTAGCTGAA
TGGTTGAATGGTTGAATGGCTCTGGATTTACACTACTGAGCAACCACCCA
CCAACAGGCGACATGCAAGGCCATTCAGCTTTATTTTATGCCTCTAGCTG
CAGCAATTGCGATGCAGTCAGATTGCTCGTTAAACTAGGAGCATCTCAGC
ACATAATCTCCGGGGCAGGTGAGGAAGTGCATTTAGTGTAGTGCTGCCCA
ACTACAAAGCGCTGGCCTAATGCTTGTAATCAATACCTCAGGGATGTCGG
CTTTATCCTTCTCTAGCACTGCCAAGGTGCGAGAAATCCTCACTCTGGGA
CTGAGGAGGGAGCTGCAGATGCTGATGCAAGTGCAGGGGGAAGCAGATAA
GCCCAGGTACTCGATCCTGACCTTCCACTGTTGAAAAGGTTCTGCATGAC
CTTCACTAAATGAGTGATATGGATCTGTACTGCACCATTATTGCTACCTT
TCTCCTGCACGCAGTTCAAGCGTTGTTGTTGGATTTCGGCCACCAGGGTG
AGATCAATCGTAAGCTAACAAATGACTGGTGCTTTTAGGCTGGGTAGCTT
AATGTCAGTGCTGGCAGAAGCGGAGCTCATGGAAGATGACAAGGCACCGC
AGCAGCTAGATATGCGCACGTGTGCTCACATGGCTGCCATAGCTGGCCTA
CCCGAGGTGGGTTGCGCGTACTCGTCCCAACCACTTGCTTCAGCTGCTCT
GCCATACAGGCTAATTAGCTCCTCGGTGTGAGAGAGCCCAGACTTCCTGA
TGCTTAGCGGGGTAGAAACCACTCTCCCAGTATCTGCAACCCTGTTACAT
ACTGTATCCACATGCGCTCCAACCTTCCTGCCAGGTGCTCAACATGCTGG
TTAAACAGGACTTTGGCCCAGGCACCAGCAGCAGGTAGGCTAACATAAGT
AAAGGAGAATGGGCAGGTAAGAAGACATTTTTGTGAGAGCTAACCAACCA
AAGGAATGACTCAGGTGGAAGGATGTAAACGGATGGACCCCACTACATCA
CTGTGCGGCTAGCTCTTCCAATGCTCACAGAGAATGTGCTGTGATACTGC
TGGGAAGTGTGAGGGGAGGCGGCGGCATCGGGGATCTGACCCACTCCGGC
AAGAGCGCGCTGCACTTGGGTACGAGAAGCGATGTCAGCTGCATGCTTTG
ACATCACTCACTGATCATGTCATGTCACTCGCTTGGTGCTCATCCTCTCA
CAGCTCAACCTAAGCCAGCACCAGCTGATCCTTAAGCTAGGCAGCCTTAA
CACAACTACAGACTAGGGATCAACTCAATGAATTATTCCCCATAGCCTGT
TCTGTCACACTCACTAGATGAACCATTCTGCTAAGCTAACTCATGCACTT
TTGGGGCCAAAGCATGTGGTGGGGCAAGCGGTGATGAAAAGAGCAGGACG
GCAATGATATCACTACTGATACAGCATGGTGCCAGTGTTAATCAGGTGGA
TGGGTCAGGGCTCCAGCCTCTGCATGCTGCTGCCATGGCAGGTAGCCCGA
TGCTGGACATTTCTCTCTCACCATCCCATTAACTTGCTGCTCATGGCCCC
CTTTGATCATACCCTTTTTTGTCATTTTGCCACACCACTGCGAGGGCAGT
GCTTCGTGCACACTCATTTATGACCTGTTTGTGTTGCACTTCACAAACCA
TGGAGTCCTTCCTCTCTTTACTGTGCTTTTCAGCTAAATGCAACCGCAAC
AACCATAGGCGTATTGATTGTAATTCGTTCTTCCTTTCCCACTCCCACTT
CCACTACAGGCAACTGGAGAGTAGTGACGTGCCTGCTCTGTAACGGGTCA
AAGCTGCATGCCTTGACGCCGAAGAAGTGGAATGCGCTTCACTTTGCTGT
GGTAACACACATTACTTACCTCCCCTCTGTCCCTCTTGCTCTCTCTCTCT
CTCCCCATCTCGCTATTGCCCTCATTCACCGACTCGTGATTGCTTGCTTT
CGCGTGCAGGCTCGCCAGCACACCGATGTGATTAGAGCTCTATGCCGGGC
CGATGCTGAACTTGGGCTTCTCAGGACAGAGCAGAACTCTTCAGGTCCGG
AGACATCAATCACCTGCTAGTCTTACCTACCAGCACTGCTACTCCTACCC
TCTTAACCGCTTTTTCTTCCCAGGAAAAACTCCTGCACATCTTGCTTACT
CAGGGAAGCATCAGCAGGTAGTTAGTTTATGGGACCGTGTTGGTGGTGCT
CCTTGCTCTGCAACTCGCCCTCTGCGGAGTGAAGTGACCCCCCTCCTCCT
CTCATGGAGTGCTGTATCTACAGCGACTGCTGTTTTTTCATCTATTATGG
GTTGCAAAGGCATTATGAGTGACAAGTTCTTTCTGCTCGGCATTTACTGA
CAAATGATGCATGACCAGGCTATGATGACTATGTGGGAGTGTGCAGCATT
GGGGAATGTACAGGGAATAGCTCAGGTCTGCTGATGCTGTCACAGTGCTT
GCAAGGCCTGTTCAGTGACTCTTCCTGACGCTTGCATCCTGCTGTTTGTT
CTCTTCCCTCTCATTTCTTTCACTCAGTGCCTCAGTTGCCCCACCAAAGA
GGGCCTGGAAGCTAAGAGCTCAGGTCAGGGGCTCACTGCATTGCATTTCA
CTATGGTGGGCTTAGGTGCAACGCTCAAGGCTGCTGACTTCATACAAGGT
GGGATAGCATAGCATAGCATAGCATATCATAGCATACTGCACCAGAGAGT
GGGATGGCAGCGACATCCGAGCATACGTTATCATGCATGGGAGAGTGGAT
GGTGGTTGGTAGGGATTGGGGTATAGTGCATCAAGAAGTGAGCTGTATCA
CACCAGAGAGCAGTTGTAGCTAAAGCACATGGCATAGGGGGTACAATGCA
TCTAAGAATGAGTTGTAGCGGCTTGACAGAGTGGGGCATCGTTTGTCTGA
TTGCTGCTTTACTCCCTGATTAAACCTCAACTCACCACCATGTCACCCTA
GGCTCTAAGAAGGCCCCAAAGAGGGGGCTAGTTGCAGATATCCTTCGAAA
GAAACCCAATGCCGAGAGCTATTTCAGGGTGGTGAGTGTTGACTCTGGCT
GCTTTTTCACTTTCCAATTAATTCCTACCTTCTTCCCTCACACCGTCTTC
CTTACACTTCTCCATGCTTTCTACCACGTTTTGACGTTAGG
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Coding sequence (CDS) from alignment at C-australica_Contig_98:63222..66712+

>mRNA_C-australica_Contig_98.20.1 ID=mRNA_C-australica_Contig_98.20.1|Name=mRNA_C-australica_Contig_98.20.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=630bp|location=Sequence derived from alignment at C-australica_Contig_98:63222..66712+ (Chrysoparadoxa australica CS_1217)
ATGCTTGTAATCAATACCTCAGGGATGTCGGCTTTATCCTTCTCTAGCAC
TGCCAAGGTGCGAGAAATCCTCACTCTGGGACTGAGGAGGGAGCTGCAGA
TGCTGATGCAAGTGCAGGGGGAAGCAGATAAGCCCAGGCTGGGTAGCTTA
ATGTCAGTGCTGGCAGAAGCGGAGCTCATGGAAGATGACAAGGCACCGCA
GCAGCTAGATATGCGCACGTGTGCTCACATGGCTGCCATAGCTGGCCTAC
CCGAGGTGCTCAACATGCTGGTTAAACAGGACTTTGGCCCAGGCACCAGC
AGCAGGTGGAAGGATGTAAACGGATGGACCCCACTACATCACTGTGCGGC
TAGCTCTTCCAATGCTCACAGAGAATGTGCTGTGATACTGCTGGGAAGTG
TGAGGGGAGGCGGCGGCATCGGGGATCTGACCCACTCCGGCAAGAGCGCG
CTGCACTTGGCATGTGGTGGGGCAAGCGGTGATGAAAAGAGCAGGACGGC
AATGATATCACTACTGATACAGCATGGTGCCAGTGTTAATCAGGTGGATG
GGTCAGGGCTCCAGCCTCTGCATGCTGCTGCCATGGCAGGTAGCCCGATG
CTGGACATTTCTCTCTCACCATCCCATTAA
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