Homology
BLAST of mRNA_C-australica_Contig_98.2.1 vs. uniprot
Match: A0A835YXZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ0_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.170e-5 Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 3 Query: 27 SDRVLHEAVYALEDAARVCIQPELQRLTHF-HSMRVHEHAAPDGCRVIRIALLLRSRANIDSVLRSIGTGCFLCEILSDVHMD 272
S++ L A +L+ V + PELQRL HF H+ G R +RI + A++D VLR +G GC L +I+ ++ +D
Sbjct: 37 SEQALQTATDSLDKVLTVFLVPELQRLPHFQHTEVTLSPPGAGGIRTVRIRAIFNKNAHLDDVLRRLGIGCRLADIIPELSID 119
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 572 |
Hectar predicted targeting category | other localisation |
Exons | 7 |
Ec32 ortholog description | EF-hand domain pair |
Ec32 ortholog | Ec-11_001660.1 |
Cds size | 558 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1682588845.7223024-UTR-C-australica_Contig_98:9967..9981 | 1682588845.7223024-UTR-C-australica_Contig_98:9967..9981 | Chrysoparadoxa australica CS_1217 | UTR | C-australica_Contig_98 9968..9981 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1682588845.7335331-CDS-C-australica_Contig_98:9981..10001 | 1682588845.7335331-CDS-C-australica_Contig_98:9981..10001 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_98 9982..10001 + |
1682588845.741773-CDS-C-australica_Contig_98:10280..10375 | 1682588845.741773-CDS-C-australica_Contig_98:10280..10375 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_98 10281..10375 + |
1682588845.75621-CDS-C-australica_Contig_98:10598..10663 | 1682588845.75621-CDS-C-australica_Contig_98:10598..10663 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_98 10599..10663 + |
1682588845.7678757-CDS-C-australica_Contig_98:10786..10889 | 1682588845.7678757-CDS-C-australica_Contig_98:10786..10889 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_98 10787..10889 + |
1682588845.7780037-CDS-C-australica_Contig_98:11064..11165 | 1682588845.7780037-CDS-C-australica_Contig_98:11064..11165 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_98 11065..11165 + |
1682588845.7889335-CDS-C-australica_Contig_98:11398..11473 | 1682588845.7889335-CDS-C-australica_Contig_98:11398..11473 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_98 11399..11473 + |
1682588845.802031-CDS-C-australica_Contig_98:11756..11855 | 1682588845.802031-CDS-C-australica_Contig_98:11756..11855 | Chrysoparadoxa australica CS_1217 | CDS | C-australica_Contig_98 11757..11855 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_98.2.1 >prot_C-australica_Contig_98.2.1 ID=prot_C-australica_Contig_98.2.1|Name=mRNA_C-australica_Contig_98.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=186bp
MNETSDRVLHEAVYALEDAARVCIQPELQRLTHFHSMRVHEHAAPDGCRV IRIALLLRSRANIDSVLRSIGTGCFLCEILSDVHMDFFCPLPLSDIFELR KCVLDRKMSCSFEITVSYARDIIVKLLEEWVTLLEHSAYQPQVDSEEHNE EREFHQHRTTDADILPGLQHPLKPPKYLQEFPYHR* back to topmRNA from alignment at C-australica_Contig_98:9968..11855+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-australica_Contig_98.2.1 ID=mRNA_C-australica_Contig_98.2.1|Name=mRNA_C-australica_Contig_98.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1888bp|location=Sequence derived from alignment at C-australica_Contig_98:9968..11855+ (Chrysoparadoxa australica CS_1217) TGGACCTAGATGTGATGAACGAGACCAGTGACAGGTGATAAGCCCCGTTC
TTTCGCCTTCTGCGCATGCTGCATGCGGATGAAGCGGAGCCCACCCTTTC
AGTACGGCCAATCCGAAGTGTTCACACCCAGCAAAGGGTTGGGCATCCTC
ATCTGATTCACTTAAGCTCTCCAAACTGGGAGCCATGGCCTGGGATGATA
TCTTGACCTGCACTCATTGATGGGCATGTGCTCTAGTCCATGTGCCTATG
AAGAATATAGTATTAATTAGGAGACGTACGGCCCAATTTCACGACATGAA
CTTACCATCTCAGAGTACTGCACGAGGCAGTGTATGCCTTGGAGGACGCG
GCAAGGGTATGCATCCAGCCAGAGCTGCAGAGGCTGACTCACTTTCATAG
CATGAGAGGTAACCAGAGCATCGGATGGCCTAACTCTCAGGCTCCTTGCT
GCGAATTAGTGAGGGCTGAGAACATCTCTGAGAGTTGGTCTAGAGGATCA
GCCTACTGCTGTCTCATGGGAAGGGACCTGGATTTACTTCTGGAGCAGTC
ATATAATTGGATGGATGGATGGATGCGTGTATATGGTAGCAATGGTGGCT
TGATAGTCTGATAGCCCTCCATGCCCTACAGTGCACGAGCATGCTGCTCC
TGATGGCTGCCGCGTGATCCGAATAGCCCTTCTCTTGCGCTCCAGGGTGA
GTCCTCGTGCTTTATGTGACCATCCTCTAATCACCGCACCATCCCACGGC
CCTTGCCCCATAGCTTGTGCATCACCCTCCCTGGCTAAAGCATTTGCCAC
TTGTTGCTTTTGTGCCCAGGCAAACATTGACTCGGTGTTGAGAAGCATCG
GGACCGGGTGCTTCCTGTGCGAGATACTTTCTGACGTTCATATGGACTTC
TTCTGCCCTCTCCCTCTCTCTGGTTAGTGAGGAATCGCTCTAATCTCTCT
TGATGCCCACCGGGATCCTTCTTATAGCAAGGGATGTGTGGGTAACGCCA
AGGGTGTGAGCTAGTAGAGAAAACTTAGCTTGGCTCTCGCTCATCATAGC
ACTTGCTCCCTCTCATCCTCTTGTCACTTGTCCCTACCTTGCCTCAGACA
TCTTTGAGCTTCGTAAGTGTGTGTTGGACCGGAAGATGAGCTGCTCCTTT
GAAATAACTGTGTCCTATGCTAGAGACATCATAGTCAAACTATTGGAGGT
GAGGGAAATGCCGAGTATGAGTGCATGAGCGTGGATAGTAAAGTAGCGAT
TTGATTGATTCATTGATTGATTGAGTGAGTGAGTGAGTGTGCTTGCAATT
GTTCAGCTACTTCTGCTCATTTAATGCCAGTATATCAAACCATAGCACAC
GGACCTTGCACGTGCCATTTAAGCCAGAGCGTCATTGCCTGCCTCACTGC
CAACTGTCTGATGACGTTTAATGCCTCTCAGGAGTGGGTGACTCTACTGG
AGCATAGTGCGTACCAGCCCCAAGTTGACTCAGAAGAGCACAATGAGGAG
AGGGAGGTGAGTCAGTGAGATAGCCATAAACAGTCAAACTACTAGTCCCC
ACTTGGATCAGATGTACTCAAGTGAAAGAGCTGCATGTTGGTAGAATGCC
CCCTGCTGCACCTGAACACCAAGGGAGCCATCTCATCCTCGGAAGCAATG
CCGTGTCAGTCACTCATTGTGCATGCCCTACACTCGCGCGAGCTCAAGTT
GGATAACGCTCCAGATGGGCCAGCACCTCTGCCGTCAACCAGTGTGGCTT
GCCTGTGTGACTAATTATGGCATGACCTTTCTCCGCCAGTTTCATCAGCA
CCGCACCACGGATGCTGATATATTGCCAGGCCTGCAGCATCCATTAAAGC
CTCCCAAGTACCTGCAGGAATTTCCCTACCATCGGTAA back to topCoding sequence (CDS) from alignment at C-australica_Contig_98:9968..11855+ >mRNA_C-australica_Contig_98.2.1 ID=mRNA_C-australica_Contig_98.2.1|Name=mRNA_C-australica_Contig_98.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=558bp|location=Sequence derived from alignment at C-australica_Contig_98:9968..11855+ (Chrysoparadoxa australica CS_1217) ATGAACGAGACCAGTGACAGAGTACTGCACGAGGCAGTGTATGCCTTGGA GGACGCGGCAAGGGTATGCATCCAGCCAGAGCTGCAGAGGCTGACTCACT TTCATAGCATGAGAGTGCACGAGCATGCTGCTCCTGATGGCTGCCGCGTG ATCCGAATAGCCCTTCTCTTGCGCTCCAGGGCAAACATTGACTCGGTGTT GAGAAGCATCGGGACCGGGTGCTTCCTGTGCGAGATACTTTCTGACGTTC ATATGGACTTCTTCTGCCCTCTCCCTCTCTCTGACATCTTTGAGCTTCGT AAGTGTGTGTTGGACCGGAAGATGAGCTGCTCCTTTGAAATAACTGTGTC CTATGCTAGAGACATCATAGTCAAACTATTGGAGGAGTGGGTGACTCTAC TGGAGCATAGTGCGTACCAGCCCCAAGTTGACTCAGAAGAGCACAATGAG GAGAGGGAGTTTCATCAGCACCGCACCACGGATGCTGATATATTGCCAGG CCTGCAGCATCCATTAAAGCCTCCCAAGTACCTGCAGGAATTTCCCTACC ATCGGTAA back to top
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