mRNA_C-australica_Contig_98.17.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.17.1
Unique NamemRNA_C-australica_Contig_98.17.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:59211..59938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size397
Hectar predicted targeting categoryother localisation
Exons5
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588845.5792153-CDS-C-australica_Contig_98:59210..592661682588845.5792153-CDS-C-australica_Contig_98:59210..59266Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 59211..59266 +
1682588845.5916977-CDS-C-australica_Contig_98:59335..594181682588845.5916977-CDS-C-australica_Contig_98:59335..59418Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 59336..59418 +
1682588845.604752-CDS-C-australica_Contig_98:59490..595801682588845.604752-CDS-C-australica_Contig_98:59490..59580Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 59491..59580 +
1682588845.6165178-CDS-C-australica_Contig_98:59676..597841682588845.6165178-CDS-C-australica_Contig_98:59676..59784Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 59677..59784 +
1682588845.6269526-CDS-C-australica_Contig_98:59880..599361682588845.6269526-CDS-C-australica_Contig_98:59880..59936Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 59881..59936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.17.1prot_C-australica_Contig_98.17.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 59211..59936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.17.1

>prot_C-australica_Contig_98.17.1 ID=prot_C-australica_Contig_98.17.1|Name=mRNA_C-australica_Contig_98.17.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=131bp
PGRSHSPLRAVSPLSPAPRSSKPADTSLSPTAPFSPVLGSRLGSSKGNKE
NAAPRRRGSETGKDEGQPATRRGSISEHVEAAPVTGQVEDTKQKQLGSCV
DKGGEAHRGSSNDRSEKAKENHDHHHKNKNH
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mRNA from alignment at C-australica_Contig_98:59211..59938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.17.1 ID=mRNA_C-australica_Contig_98.17.1|Name=mRNA_C-australica_Contig_98.17.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=728bp|location=Sequence derived from alignment at C-australica_Contig_98:59211..59938+ (Chrysoparadoxa australica CS_1217)
CCTGGGAGATCCCATTCGCCCTTGCGAGCTGTGAGCCCTCTCTCGCCTGC
CCCAAGGTTGACCGACCCTCGTACCCCAGCTCGGCGCCGCCCGTATCTCA
CGACTACCCCTCTGCCCACTGCTAGGTCCTCCAAACCAGCGGACACCAGC
TTATCGCCCACCGCGCCTTTTAGCCCAGTGCTGGGCAGCAGGCTTGGGAG
TAGTAAGGGTGAGACATCCGCCCTTGCCCCGCGTAGAGGCTCATGCCTAA
TTGACGCCTCTCCTTGCTTTTGGCTGGCAGGTAATAAAGAAAATGCTGCC
CCCAGGCGCCGGGGAAGTGAGACAGGCAAAGATGAGGGACAGCCAGCAAC
TAGACGAGGGAGCATTAGCGGTTGGTCTAATCTATTACCGCTGCTCGGCT
AAGCTATCCTCCTTATTTTTATGGACTGAGCTGAGCCGAGCTGAGCTGAC
CAGAGTTTGTTCGCAGAACATGTTGAGGCAGCACCAGTGACAGGACAAGT
AGAAGACACAAAGCAGAAGCAACTAGGGAGTTGTGTTGACAAGGGTGGAG
AGGCACACCGAGGCAGTTCTAATGGTATAATGTGGGATAGCTTTGTCATG
GCTATATCTTTCCTAACGCCCTAGCTGGCCTGACTTGGCCTGACCTGATC
CCTCCTCCATACATGCATAGATCGTAGCGAGAAGGCAAAGGAGAACCATG
ACCACCACCATAAGAATAAAAATCATGG
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Coding sequence (CDS) from alignment at C-australica_Contig_98:59211..59938+

>mRNA_C-australica_Contig_98.17.1 ID=mRNA_C-australica_Contig_98.17.1|Name=mRNA_C-australica_Contig_98.17.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=393bp|location=Sequence derived from alignment at C-australica_Contig_98:59211..59938+ (Chrysoparadoxa australica CS_1217)
CCTGGGAGATCCCATTCGCCCTTGCGAGCTGTGAGCCCTCTCTCGCCTGC
CCCAAGGTCCTCCAAACCAGCGGACACCAGCTTATCGCCCACCGCGCCTT
TTAGCCCAGTGCTGGGCAGCAGGCTTGGGAGTAGTAAGGGTAATAAAGAA
AATGCTGCCCCCAGGCGCCGGGGAAGTGAGACAGGCAAAGATGAGGGACA
GCCAGCAACTAGACGAGGGAGCATTAGCGAACATGTTGAGGCAGCACCAG
TGACAGGACAAGTAGAAGACACAAAGCAGAAGCAACTAGGGAGTTGTGTT
GACAAGGGTGGAGAGGCACACCGAGGCAGTTCTAATGATCGTAGCGAGAA
GGCAAAGGAGAACCATGACCACCACCATAAGAATAAAAATCAT
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