mRNA_C-australica_Contig_98.10.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_98.10.1
Unique NamemRNA_C-australica_Contig_98.10.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: A0A485LA40_9STRA (Aste57867_18449 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA40_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.080e-36
Identity = 63/82 (76.83%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKIE 247
            GGAIAMP PL DG VEYEDGTPATVSQMAKDV+ FL W AEPEHD RK  GMQ   GL     LTGYYKR+RWAPLKTRKIE
Sbjct:  189 GGAIAMPAPLEDGKVEYEDGTPATVSQMAKDVSVFLSWAAEPEHDERKKMGMQWCFGLFVTALLTGYYKRMRWAPLKTRKIE 270
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BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: G5AHH7_PHYSP (Cytochrome c domain-containing protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=G5AHH7_PHYSP)

HSP 1 Score: 128 bits (321), Expect = 8.630e-35
Identity = 61/81 (75.31%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKI 244
            GGAIAM   L DG +EYEDGTP T SQMAKDV+ FL W AEPEHDVRK QGMQ  + LLA  ALTGYYKRL+WAPLKTRKI
Sbjct:  186 GGAIAMERQLQDGQIEYEDGTPCTTSQMAKDVSVFLAWAAEPEHDVRKKQGMQTTIALLALCALTGYYKRLKWAPLKTRKI 266
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.800e-34
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKI 244
            GGAIAMPPPL+DG VEYEDGTPATV+QMAKDV+ FL WCAEPEHD RK  G++ +  L   I +T YYKRLRWAP+KTRKI
Sbjct:  188 GGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKI 268
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: H3G7D8_PHYRM (Cytochrome c domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=H3G7D8_PHYRM)

HSP 1 Score: 125 bits (315), Expect = 2.440e-34
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKI 244
            GGAIAM   L DG V+YEDGTP T SQMAKDV+ FL W AEPEHDVRK QGMQ  + LL   ALTGYYKRL+WAPLKTRKI
Sbjct:  146 GGAIAMERQLQDGQVDYEDGTPCTTSQMAKDVSVFLAWAAEPEHDVRKKQGMQTAIALLGLCALTGYYKRLKWAPLKTRKI 226
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: A0A067C0J4_SAPPC (Cytochrome c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C0J4_SAPPC)

HSP 1 Score: 126 bits (317), Expect = 3.590e-34
Identity = 60/81 (74.07%), Postives = 61/81 (75.31%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKI 244
            GG IAM  PL DG VEYEDGTPATVSQMAKDV CFL W AEPEHD RK  GMQ   GL      TGYYKR+RWAPLKTRKI
Sbjct:  188 GGMIAMAQPLNDGQVEYEDGTPATVSQMAKDVACFLSWAAEPEHDERKKMGMQWCFGLFVTALFTGYYKRMRWAPLKTRKI 268
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: A0A0P5MCT1_9CRUS (Cytochrome c1, heme protein, mitochondrial (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0P5MCT1_9CRUS)

HSP 1 Score: 126 bits (316), Expect = 3.730e-34
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKI 244
            GGAIAM   L DG +EYEDGTPAT +QMAKDV  FL W +EPEHDVRK QGMQ +L L A + LTGYYKRL+WAPLKTRKI
Sbjct:  175 GGAIAMERQLRDGQIEYEDGTPATTAQMAKDVAVFLAWASEPEHDVRKKQGMQTVLALSALVLLTGYYKRLKWAPLKTRKI 255
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: M4C0R6_HYAAE (Cytochrome c domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4C0R6_HYAAE)

HSP 1 Score: 124 bits (311), Expect = 2.710e-33
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKIE 247
            GGAIAM   L DG ++YEDGTP T SQMAKDV+ FL W AEPEHDVRK QGMQ ++ L A   LTGYYKRL+WAPLKTRKI 
Sbjct:  186 GGAIAMERQLQDGQIDYEDGTPCTTSQMAKDVSVFLAWAAEPEHDVRKKQGMQAVIVLAALCGLTGYYKRLKWAPLKTRKIS 267
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: W4G561_9STRA (Cytochrome c domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4G561_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.790e-33
Identity = 60/82 (73.17%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKIE 247
            GGAIAM   L DG V YEDGTPAT SQMAKDV+ FL W AEPEHD RK  G+Q  LGL A   LTGYYKRLRWAPLKTRKI 
Sbjct:  189 GGAIAMEKQLEDGKVTYEDGTPATASQMAKDVSVFLAWAAEPEHDERKKMGLQWCLGLFAAAVLTGYYKRLRWAPLKTRKIS 270
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: K3X7N2_GLOUD (Cytochrome c domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X7N2_GLOUD)

HSP 1 Score: 122 bits (306), Expect = 1.520e-32
Identity = 59/81 (72.84%), Postives = 63/81 (77.78%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKI 244
            GGAIAM   L DG +EY DGTPAT SQMAKDV+ FL W AEPEHDVRK QG Q  L L A + LTGYYKRL+WAPLKTRKI
Sbjct:  186 GGAIAMERQLNDGQIEYADGTPATTSQMAKDVSVFLAWAAEPEHDVRKKQGFQTALALGAMVLLTGYYKRLKWAPLKTRKI 266
[Close]
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.540e-32
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 2 
Query:    2 GGAIAMPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVILGLLACIALTGYYKRLRWAPLKTRKIE 247
            GG IAMPPPL DG ++YEDGTPATVSQMAKDV  FL WCAEPEHD RK +G + +L L A +  TG+YKR RW+  KTRK+ 
Sbjct:  193 GGLIAMPPPLDDGQLDYEDGTPATVSQMAKDVVIFLNWCAEPEHDERKKEGFKAVLCLAAALVFTGFYKRFRWSIYKTRKLS 274
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_98.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A485LA40_9STRA2.080e-3676.83Aste57867_18449 protein n=1 Tax=Aphanomyces stella... [more]
G5AHH7_PHYSP8.630e-3575.31Cytochrome c domain-containing protein n=18 Tax=Pe... [more]
A0A835Z587_9STRA1.800e-3472.84Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371... [more]
H3G7D8_PHYRM2.440e-3474.07Cytochrome c domain-containing protein n=2 Tax=Per... [more]
A0A067C0J4_SAPPC3.590e-3474.07Cytochrome c domain-containing protein n=4 Tax=Sap... [more]
A0A0P5MCT1_9CRUS3.730e-3472.84Cytochrome c1, heme protein, mitochondrial (Fragme... [more]
M4C0R6_HYAAE2.710e-3370.73Cytochrome c domain-containing protein n=7 Tax=Per... [more]
W4G561_9STRA5.790e-3373.17Cytochrome c domain-containing protein n=2 Tax=Aph... [more]
K3X7N2_GLOUD1.520e-3272.84Cytochrome c domain-containing protein n=2 Tax=Pyt... [more]
A0A7S1BBA1_9STRA3.540e-3265.85Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_98contigC-australica_Contig_98:34833..35476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008608557.1
Preferred nameCYC1
PFAMsCytochrom_C1
Model size250
Max annot lvl2759|Eukaryota
KEGG koko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
Exons3
Evalue2.53e-32
EggNOG OGsCOG2857@1|root,KOG3052@2759|Eukaryota
DescriptionCytochrome c1
Cds size234
COG categoryC
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588846.4091635-CDS-C-australica_Contig_98:34832..349221682588846.4091635-CDS-C-australica_Contig_98:34832..34922Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 34833..34922 -
1682588846.4234028-CDS-C-australica_Contig_98:35102..351801682588846.4234028-CDS-C-australica_Contig_98:35102..35180Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 35103..35180 -
1682588846.4353147-CDS-C-australica_Contig_98:35394..354601682588846.4353147-CDS-C-australica_Contig_98:35394..35460Chrysoparadoxa australica CS_1217CDSC-australica_Contig_98 35395..35460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588846.4442818-UTR-C-australica_Contig_98:35460..354761682588846.4442818-UTR-C-australica_Contig_98:35460..35476Chrysoparadoxa australica CS_1217UTRC-australica_Contig_98 35461..35476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_98.10.1prot_C-australica_Contig_98.10.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_98 34833..35460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_98.10.1

>prot_C-australica_Contig_98.10.1 ID=prot_C-australica_Contig_98.10.1|Name=mRNA_C-australica_Contig_98.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=78bp
MPPPLVDGAVEYEDGTPATVSQMAKDVTCFLQWCAEPEHDVRKAQGMQVI
LGLLACIALTGYYKRLRWAPLKTRKIE*
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mRNA from alignment at C-australica_Contig_98:34833..35476-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_98.10.1 ID=mRNA_C-australica_Contig_98.10.1|Name=mRNA_C-australica_Contig_98.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=644bp|location=Sequence derived from alignment at C-australica_Contig_98:34833..35476- (Chrysoparadoxa australica CS_1217)
AGGTGGTGCTATAGCAATGCCACCACCACTGGTAGATGGCGCAGTAGAGT
ATGAGGACGGCACTCCTGCTACTGTCAGCCAGGTAAGCCGATGTTGTGCA
TTGTGTCAGTTAATGCAAGATGATGAGTGAGAGTGCCCGGCACAGTCTTC
CGAACGGCTCACTTTACTTGCAACTTCTTTAACTGGCCGTGACGTGAGGA
AAGCAAAGCAAAGAAAGTCTCTGTCTAACCAGCTGTCCTCCACTCTATTC
GTCTTGGTTTGACCCTTAACCCTCAACCCTTGTGTTTTTGTTGCAGATGG
CAAAGGATGTCACGTGCTTTCTTCAATGGTGTGCTGAGCCTGAACATGAT
GTCAGGAAGGCGCAGGGCATGCAGGTATGTACCCAAACCTCTGTTGATAT
TACACCCCCATTCCTATTTCCTCTCTGCATGACTTATCAAATCAATTTAC
ACTTATATTCACATTTATGTGAACGAAGTCTATGAGATAGTTGTGTGATA
CATTTTTGATGTATGCCCTGTGATTTGTCATGACCCACACTTTGCGCTTT
GCAGGTGATCTTGGGCCTGCTTGCTTGCATTGCATTAACTGGGTATTACA
AGAGGCTGCGATGGGCACCACTCAAGACAAGGAAGATTGAGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_98:34833..35476-

>mRNA_C-australica_Contig_98.10.1 ID=mRNA_C-australica_Contig_98.10.1|Name=mRNA_C-australica_Contig_98.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=234bp|location=Sequence derived from alignment at C-australica_Contig_98:34833..35476- (Chrysoparadoxa australica CS_1217)
ATGCCACCACCACTGGTAGATGGCGCAGTAGAGTATGAGGACGGCACTCC
TGCTACTGTCAGCCAGATGGCAAAGGATGTCACGTGCTTTCTTCAATGGT
GTGCTGAGCCTGAACATGATGTCAGGAAGGCGCAGGGCATGCAGGTGATC
TTGGGCCTGCTTGCTTGCATTGCATTAACTGGGTATTACAAGAGGCTGCG
ATGGGCACCACTCAAGACAAGGAAGATTGAGTAA
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