mRNA_C-australica_Contig_979.5.1 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI) HSP 1 Score: 236 bits (602), Expect = 3.530e-62 Identity = 130/296 (43.92%), Postives = 182/296 (61.49%), Query Frame = 2 Query: 968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816 VQAEM+ + A ++ ++ GP+ SW+ SF+ WA G +D FY +L+ FL RF D+ F ++G I ISR + VD ++++ AL D R+ + STL+P+PFA+S +EQF+VI EL ++F L L AV LSL +LG + LL + V+D E+LG +Y+W L+V+SIT I LIMAVGLVVDY VH + YFLHQDP I ++ R A AL E+G SV G TTFL I+ LAF+ N +FRVFF+MF I+ HG+V +PV+L+ +P Sbjct: 602 VQAEMQSVDAEMIETKNVDGPLDSWLASFIVWAEANTTYSANVGTSGGYPVYDDRDTFYTALSAFLADEDNARFVPDVVFDDEGLIKISRSDMYLVNLVDTENNVDALRDTREVADQSTLDPQPFAYSGVFVFSEQFVVIYNELLSSFGLALLAVLALSLFVLGKVTIVLLVCLTLVVIDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPRIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGFFHGVVFIPVMLSILP 897
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI) HSP 1 Score: 229 bits (585), Expect = 2.060e-60 Identity = 130/296 (43.92%), Postives = 178/296 (60.14%), Query Frame = 2 Query: 968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816 VQAEM+ ++ E GPV SW+ SF+ WA G ++ FY +L+ F RF D+ F +DGTI ISR F G D + ++ AL R+ V+ S L+P PFA+S+ +EQF+VI GEL ++F L LAAVF LSLL+LG + +L + +VD E+LG +Y + L+V+SIT I LIMAVGLVVDY VH + YFLHQDP ++ R A AL E+G S+ G TTFL I+ L F+ N +FRVFF+MF I+ HG+V +PV+L+ +P Sbjct: 492 VQAEMQSTDDLLLENEFVEGPVDSWLTSFIEWAESSDTYSANVGTSGGYVVYEDRATFYTALSAFTEDGANARFLGDVVFNDDGTIKISRSDMFLVGLTDTEKNVDALRGTREVVDQSALDPAPFAYSEVFVSSEQFVVIYGELMSSFGLALAAVFALSLLVLGKVAVVVLVCVTLVIVDAELLGFVYLYGLDVNSITVIQLIMAVGLVVDYMVHLVHYFLHQDPRTPKDTRIADALGEIGPSLLMGAGTTFLGIMPLVFAHNVIFRVFFKMFLVIISFGFYHGVVFVPVMLSILP 787
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI) HSP 1 Score: 225 bits (574), Expect = 2.420e-58 Identity = 125/296 (42.23%), Postives = 179/296 (60.47%), Query Frame = 2 Query: 968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816 VQAEM+ + ++ ++ + P+ SW+ SF+ WA G +D FY +L+ FL RF D+ F ++G I ISR + VD ++ L D R+ + STL+P+PFA+S +EQ++VI EL ++F L L AV LSL +LG + LL + ++D E+LG +Y+W L+V+SIT I LIMAVGLVV+Y VH + YFLHQDP+I ++ R A AL E+G SV G TTFL I+ LAF+ N +FRVFF+MF I+ HG+V +PVLL+ +P Sbjct: 630 VQAEMQSVDEEMLELKNVAAPLDSWLVSFIVWAEVNTTYSANIGTSGGYPVYDDRDTFYTALSAFLADEDNARFLADVVFDDEGIIKISRSEMYLINLVDTDKNVDVLRDTREVADQSTLDPQPFAYSAVFLFSEQYVVIYNELLSSFGLALLAVLVLSLFVLGKVTVVLLVCVTLIIIDVELLGFVYHWNLDVNSITVIELIMAVGLVVEYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGFFHGVVFIPVLLSMLP 925
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY88_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY88_ECTSI) HSP 1 Score: 215 bits (548), Expect = 2.430e-55 Identity = 124/282 (43.97%), Postives = 168/282 (59.57%), Query Frame = 2 Query: 968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWA-------------GPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVI 1774 VQAE++ + ++ + GPV SW+ SF+ WA G +D FY +L+ FL RF D+ F +DG I ISR F VD +++ AL D R+ + STL+P+PFA+S TEQ+LVI EL +F L L AV LSL +LG + +L + ++D E+LG +Y+W L V+SIT I LIMAVGLVVDY VH + YFLHQDP+I ++ R A AL E+G SV G TTFL I+ LAF+ N +FRVFF+MF I+ V+ Sbjct: 553 VQAEIQSIDDEMLELNNVDGPVDSWLASFIVWAEANTTYSANVGTSGGYPVYDDRDTFYTALSAFLEDEDNARFLEDVVFDDDGLIKISRSEMFLINLVDTDNNLDALLDTREVSDQSTLDPQPFAYSDVFGFTEQYLVIYDELLASFGLALLAVLILSLFVLGKVAIVVLVCVTLVIIDVELLGFVYHWNLNVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIADALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVIISFGVV 834
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A6H5L5K0_9PHAE (SSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K0_9PHAE) HSP 1 Score: 214 bits (544), Expect = 2.560e-55 Identity = 120/277 (43.32%), Postives = 166/277 (59.93%), Query Frame = 2 Query: 968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRWAGPAATFDTPT-------------KFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIV 1759 VQAEM+ + A ++ ++ GP+ SW+ SF+ WA T+ FY +L+ FL RF D+ F ++G I ISR + VD ++++ AL D RD + STL+P+PFA+S +EQF+VI EL ++F L L AV LSL +LG + +D E+LG +Y+W L+V+SIT I LIMAVGLVVDY VH + YFLHQDP+I ++ R A AL E+G SV G TTFL I+ LAF+ N +FRVFF+MF I+ Sbjct: 469 VQAEMQSVDAEMIETKNVDGPLDSWLASFIVWAEANTTYSANVGTSGGYPVYNDRDTFYTALSAFLADEDNARFVPDVIFDDEGLIKISRSDMYLVNLVDTENNVDALRDTRDVADQSTLDPQPFAYSGVFVFSEQFVVIYNELLSSFGLALLAVLALSLFVLGKVM-----------IDVELLGFVYHWNLDVNSITVIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMVGAATTFLGIMPLAFANNVIFRVFFKMFLVII 734
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI) HSP 1 Score: 209 bits (532), Expect = 3.550e-53 Identity = 116/284 (40.85%), Postives = 172/284 (60.56%), Query Frame = 3 Query: 18 VKARRVLSCGGIYLILLSVVAGYGLASAFGIPFTSLAGILPFVLLGVGVDNMFIIISSCDSINKALPTYERVGLGLRRCGMSVLNTTSVNFLAFMLGSLTSLPGVKFFTLYAGLSVLTTGVLSMTAFVALVAWDLERQSNGIYDVLCCVTKAPKVSN----------------GGLGRSRSPSPYKADSTGEKSE-SALGKWVKERYAPSLMSPVGKALVMLLSLALLGTSVYGVTQVQDGFELLDLVPDKSFARDFISGAREYNLFIDDFFVPAAIYYEDIDY 818 VK R L GG+ L++ + +A YG+ S F IPFT L+ ILPF+L+G+GVD+MF+I+++ D + +L ER+ LG++RCG+SV T+ NF AFMLGS++SLP V++F LYAG ++L L MTAFVAL+ D RQ G D CC T + +G S D E + S++G+++KE+Y+P ++S GKALV+L S LL +YGVTQ GF+ LDL PD ++ ++ AR Y+ I +++VP +Y +++DY Sbjct: 291 VKRRSWLGVGGVMLVVAAGLAAYGINSGFDIPFTPLSRILPFILIGIGVDDMFVIVAAYDHTDPSLAVEERIALGVKRCGVSVTYTSLTNFFAFMLGSMSSLPAVEYFCLYAGTAILFDFFLQMTAFVALLTMDANRQKAGKIDSCCCFTSKKYLREQERQHQEGVPRGVTLPASIGERVDMSRRALDRKAEVHQISSIGRFMKEKYSPFVLSAKGKALVLLGSAGLLAAGIYGVTQATQGFDALDLAPDGHYSIEYTEKARSYDFDIQEWYVPINVYTQEVDY 574
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: D8LCK9_ECTSI (Similar to Patched domain-containing protein 3, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK9_ECTSI) HSP 1 Score: 197 bits (502), Expect = 3.230e-49 Identity = 114/277 (41.16%), Postives = 158/277 (57.04%), Query Frame = 2 Query: 968 VQAEMRRLQASVVAGEHASGPVLSWMESFLRW-------------AGPAATFDTPTKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIV 1759 VQA+++ + +V GP+ SW+ L W +G ++ FY +LA F RF +D ++ DGTI ISR + ++ I AL+D R+ V STL+P+P AFS +EQFLVI EL NF++ L AV S+ ILG + L + ++D E+LG +Y+W+L+V+S+T I LIMAVGLVVDY VH + YFLHQDP ++ R A L E+G SV G TTFL I +AF+ N VFRVFF+MF I+ Sbjct: 570 VQAQIQGTDSLMVDQRFVVGPITSWLSGLLSWTANHTEYSTNVGTSGGYPVYEDRDTFYTALAEFTQDGDNSRFLSDFVYKTDGTIEISRTTMYLIDLTSTENGINALKDSREVVGESTLDPQPLAFSAYFVFSEQFLVIYDELMMNFVMALVAVAVFSVFILGRWKIIALVCFTLVIIDVELLGFVYHWRLDVNSLTVIELIMAVGLVVDYMVHIVHYFLHQDPDRDKDVRIADGLGEIGPSVVVGAATTFLGITPMAFAANHVFRVFFKMFLIII 846
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A7S2WB03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB03_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.940e-45 Identity = 118/320 (36.88%), Postives = 166/320 (51.88%), Query Frame = 2 Query: 956 HSAEVQAEMRRLQASVVA--GEHASGPVLSWMESFLRWA-GPAATFDTP----------TKFYQSLAVFLGSAVGKRFNTDIDFQEDGTIGI-------SRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIPVSDDEQVASPKAS 1855 H +VQ M L+ ++ G GPV SW+ SF W + ++T T FY+++ F + RF+TD+ F G+ SRV +H G D I A+ D RD ++ + L P FS + E LV+ EL N L AV +SLLIL LL +I V+D EI+G++Y+W L V+++T + L+MAVGLVVDY H L Y+L Q ER ALVE+G SV G TTFL ++ LAF+ + +FR FFRMF SI+V HGL+ LP ++ +P D + P+ S Sbjct: 7 HDQDVQEGMLELEDDFLSLKGGFTEGPVTSWIRSFTTWVQSDTSPYNTSVNADGYLVNETLFYEAVLHFTQLELYTRFDTDVVFHNVTINGVPSLRIRNSRVSAYHVGLGDPLDEIDAMLDSRDLMKKADLPRTPIVFSPTYVNIETELVLPEELTLNLAFALVAVTIVSLLILVRPTAVLLVSMIICVIDVEIIGTMYFWGLNVNTVTVVQLVMAVGLVVDYTAHILHYYLQQPFHKEPMERLRDALVEIGPSVLLGCFTTFLGVMPLAFAQSVIFRTFFRMFLSIIVYGAAHGLIFLPAIIPSLPFGDVSEYVDPEKS 326
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A835YJJ3_9STRA (Patched family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ3_9STRA) HSP 1 Score: 179 bits (455), Expect = 5.690e-43 Identity = 100/274 (36.50%), Postives = 163/274 (59.49%), Query Frame = 3 Query: 18 VKARRVLSCGGIYLILLSVVAGYGLASAFGIPFTSLAGILPFVLLGVGVDNMFIIISSCDSINKALPTYERVGLGLRRCGMSVLNTTSVNFLAFMLGSLTSLPGVKFFTLYAGLSVLTTGVLSMTAFVALVAWDLERQSNGIYDVLCCVTKAPKVSNGGLGRSR--------SPSPYKADSTGEKSESALGKWVKERYAPSLMSPVGKALVMLLSLALLGTSVYGVTQVQDGFELLDLVPDKSFARDFISGAREYNLFIDDFFVPAAIYYEDID 815 VK R L + I++S YGL +AFG+PFTSL +LPF+L+G+G+D+ FI+ + D +N LPT ER+ + RCG+SV T+ +NF+ FMLG+ ++LP +++F +YAG++VL +L + +F+AL+A+D +RQ YD+LCC +P P + +S S S +G+ +K + P+L++ G L L ++ ++GVTQV G E+LDLVPD S+AR++++ AR + +F D P + ++ +D Sbjct: 336 VKGRARLGLICVTCIVISGAGAYGLCAAFGVPFTSLQQVLPFLLIGIGLDDAFIMAGALDLVNPDLPTAERIAEAMGRCGLSVFYTSIINFMVFMLGANSTLPAIEYFCIYAGVAVLFDFLLQVPSFIALLAYDTDRQRARKYDLLCCXXXXXXXXXXXXXXXXXXXXXAQGTPPPVQLESG---STSRVGRVLKRHFIPNLLTVPGALAAGTLLLGIMAVCIWGVTQVGQGLEILDLVPDSSYAREYVTVARAFYMFPYDNVQPLQLVFDALD 606
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Match: A0A6H5JGQ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ4_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.090e-42 Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 2 Query: 1190 ISRVHFFHQGTVDVKSSIQALEDVRDSVESSTLEPKPFAFSKQHTLTEQFLVIKGELATNFLLVLAAVFGLSLLILGYLRHALLAVALIAVVDFEILGSIYYWQLEVSSITGIALIMAVGLVVDYQVHTLFYFLHQDPTISREERAAAALVEVGASVFQGGCTTFLSILALAFSGNQVFRVFFRMFFSIVVLAVIHGLVVLPVLLTFIP 1816 ISR + VD + + LED R+ + STL+P+ FA+S EQ+L I EL ++F L L AV LSL +LG + ++D E+LG +Y+W L+++ IT I LIMAVGLVVDY VH + YFLHQDP+I ++ R A AL E+G SV G TTFL I+ LAF+ N +FRVFF MF I+ HG+V +PV+L+ +P Sbjct: 322 ISRSEMYLINLVDTDNKVDTLEDKREVADQSTLDPQAFAYSDMFLFAEQYLAIYNELLSSFGLALLAVLVLSLFVLGKV-----------IIDVELLGFVYHWNLDMNGITAIELIMAVGLVVDYMVHIVHYFLHQDPSIPKDARIAEALGEIGPSVMAGAATTFLGIMPLAFANNVIFRVFFNMFLVIISFGFFHGVVFIPVVLSILP 519 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_979.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_979.5.1 >prot_C-australica_Contig_979.5.1 ID=prot_C-australica_Contig_979.5.1|Name=mRNA_C-australica_Contig_979.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=346bp MRRLQASVVAGEHASGPVLSWMESFLRWAGPAATFDTPTKFYQSLAVFLGback to top mRNA from alignment at C-australica_Contig_979:10768..15159- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_979.5.1 ID=mRNA_C-australica_Contig_979.5.1|Name=mRNA_C-australica_Contig_979.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4392bp|location=Sequence derived from alignment at C-australica_Contig_979:10768..15159- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_979:10768..15159- >mRNA_C-australica_Contig_979.5.1 ID=mRNA_C-australica_Contig_979.5.1|Name=mRNA_C-australica_Contig_979.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1038bp|location=Sequence derived from alignment at C-australica_Contig_979:10768..15159- (Chrysoparadoxa australica CS_1217)back to top |