mRNA_C-australica_Contig_978.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_978.2.1
Unique NamemRNA_C-australica_Contig_978.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: A8M7X1_SALAI (Bilirubin oxidase n=7 Tax=Salinispora arenicola TaxID=168697 RepID=A8M7X1_SALAI)

HSP 1 Score: 76.6 bits (187), Expect = 4.720e-14
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:   10 ELEIVLQDRDFVREGS--------DKGRLAYDADFETTGE--PLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVGHLLPVTIIGTD 324
            E+ IV+QDR F R+GS          G     AD+   G+  P+ +PEFF   ++ANG  WP+ +V QR YR+R L+G ++RT +  L +  NP  ++    V   LP+ +IGTD
Sbjct:  300 EIPIVIQDRSFERDGSLFYPSSRAFSGTCTNPADYIPNGDVPPIWVPEFFADTMVANGRTWPRLEVEQRRYRLRLLNGCNTRTLI--LTIAANPTAER---PVDPALPIWLIGTD 409
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: UPI0010413848 (multicopper oxidase domain-containing protein n=1 Tax=Actinomadura fibrosa TaxID=111802 RepID=UPI0010413848)

HSP 1 Score: 72.8 bits (177), Expect = 1.050e-12
Identity = 46/115 (40.00%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:    1 GGCELEIVLQDR--DFVREGSDKGRLAYDADFETTGEPLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVGHLLPVT----IIGTDQ 327
            G  E+ +V+ DR  D    G+  GRL +   +   G+  +   F GPY LANG IWP  DV  RWYR R L+GA++RT+ ++L  E N D        G   PVT     IGT+Q
Sbjct:  227 GAYEIPLVIADRNLDTDASGNFTGRLLHKVGYYDLGDVRVSLPFAGPYNLANGVIWPHLDVEPRWYRFRLLNGANARTYTLELRKE-NTD--------GTSSPVTGAIVQIGTEQ 332
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: UPI001666CDAC (multicopper oxidase domain-containing protein n=1 Tax=Marinobacterium zhoushanense TaxID=1679163 RepID=UPI001666CDAC)

HSP 1 Score: 72.4 bits (176), Expect = 1.440e-12
Identity = 46/122 (37.70%), Postives = 58/122 (47.54%), Query Frame = 1 
Query:   10 ELEIVLQDRDFVREGS----------------DKGRLAYDADFETTGEPLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVGHLLPVTIIGTDQ 327
            EL   +QDR F   G                 D+  +    D    G P  L EFFG ++L NG IWPK+DV  R YRIR L+G DSR   + L +   PD     GQ G  +P  +IG+DQ
Sbjct:  264 ELGFAVQDRMFRSNGELFYPAFPEDPGYFDFIDEEGVELPDDLFPEGGPTALAEFFGDHMLVNGIIWPKYDVEPRQYRIRLLNGCDSRFMRLCLNLVPYPDTTPRTGQ-GSRVPFYVIGSDQ 384
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: UPI00192B79F2 (multicopper oxidase n=2 Tax=unclassified Clostridium TaxID=2614128 RepID=UPI00192B79F2)

HSP 1 Score: 71.6 bits (174), Expect = 2.620e-12
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    1 GGCELEIVLQDRDFVREGSDKGRLAYDADFETTGE---PLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVGHLLPVTIIGTDQ 327
            G  E+ IV+QDR F  +GS    L Y A+         P I+PEFFG  +LANG +WP  DV  R YRIR L+G++SR + ++     NP    V G+  H++    IGTDQ
Sbjct:  186 GDYEIPIVIQDRSFNEDGS----LYYPAEPTPPVPDVYPSIVPEFFGDTILANGKVWPYCDVEPRLYRIRLLNGSNSRFYTLKF----NP----VNGKAPHVMQ---IGTDQ 282
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: UPI001292959A (multicopper oxidase n=1 Tax=Zoogloea sp. 1C4 TaxID=2570190 RepID=UPI001292959A)

HSP 1 Score: 71.6 bits (174), Expect = 2.670e-12
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:   10 ELEIVLQDRDFVREGSDKGRLAYDADFETTGEPLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVG 291
            EL I +QDR F   G+     A D    +   P  LPEFFG  V+ANG  WP+FD   R YR+R L+G+DSR F +  V+E   +      Q+G
Sbjct:  254 ELPICIQDRQFKNTGA-LNYPATDPANPSAPNPTHLPEFFGDVVVANGVPWPRFDCEPRLYRLRLLNGSDSRVFTLSFVLENFANTRLTFWQIG 346
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: UPI001BFD38AB (multicopper oxidase domain-containing protein n=1 Tax=Pseudomonas sp. DB1 TaxID=2822138 RepID=UPI001BFD38AB)

HSP 1 Score: 70.9 bits (172), Expect = 5.000e-12
Identity = 47/126 (37.30%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:   10 ELEIVLQDRDFVREGSDKGRLAYDA-------DFETTGEPLILP-------------EFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVGHLLPVTIIGTDQ 327
            EL  ++QDR F     +KG L Y A       D   TGE +ILP             EFFG +++ NG IWPK +V  R YR+R ++G DSR  ++Q V       D      G  LP  +IG+DQ
Sbjct:  264 ELAYLVQDRMFT----EKGALFYPAFPGDPFYDDFITGEGVILPPEHFPNGGPTALAEFFGDHIVVNGKIWPKANVEPRHYRLRLVNGCDSRFMVLQFVAVAANVTDPNHSSAGAPLPFWVIGSDQ 385
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: A0A849R8K6_9GAMM (Multicopper oxidase family protein n=1 Tax=Methyloglobulus sp. TaxID=2518622 RepID=A0A849R8K6_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 6.810e-12
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   10 ELEIVLQDRDF-VREGSDKGRLAYDADFETTGEPLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVG 291
            EL +V+QDR+  V  GS  G+L +    E  G P    EFFGPY L NG IWPK  V  R YR+R L+G+++RT+ + L+  Q         Q+G
Sbjct:  223 ELPLVIQDRNLDVEAGSFTGKLLHKT--EVNGGPA---EFFGPYTLVNGKIWPKASVEPRLYRLRVLNGSNARTYRLMLLDAQGTSQHGFIWQIG 312
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: A0A846P4T9_9BACT (Multicopper oxidase domain-containing protein n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A846P4T9_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 9.400e-12
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:    1 GGCELEIVLQDRDFVREGSDKGRLAYD---ADFETTGEPL-----ILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVGHLLPVTIIGTD 324
            G  E+EIV+QDR F   G    +L +    A+ E   +PL     I+ EFFG ++L NGA WPKF+V  R YR+R L+G+DSR ++++    Q+ +M       G   P   IGTD
Sbjct:  244 GPYEVEIVIQDRMFDANG----QLFFPSTGAEIEPGFDPLPPGPSIIAEFFGDFILVNGAAWPKFEVEPRKYRLRLLNGSDSRFYVLEF---QDAEMG------GTAQPFHQIGTD 346
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BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: A0A6I4MNT4_9ACTN (Multicopper oxidase domain-containing protein n=3 Tax=Actinomadura TaxID=1988 RepID=A0A6I4MNT4_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 1.260e-11
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:    1 GGCELEIVLQDRDFVREGSD--KGRLAYDADF-ETTGEPLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQL 243
            G  E+ +++ DR+   +  D   GRL +   + +T G  + LP F GPY L NG IWP  DV  RWYR R L+GA+ RT+ ++L
Sbjct:  226 GAYEIPLIIADRNLDTDADDTFNGRLLHKVGYYDTNGRRVSLP-FAGPYNLVNGKIWPYLDVEPRWYRFRVLNGANGRTYTLEL 308
[Close]
BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Match: A0A7C3CCB1_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Phaeodactylibacter sp. TaxID=1940289 RepID=A0A7C3CCB1_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-11
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:    1 GGCELEIVLQDRDFVREGS--------DKGRLAYDADFETTGEPLILPEFFGPYVLANGAIWPKFDVSQRWYRIRWLDGADSRTFLMQL 243
            G  E EIV+QD+ F   GS        D   L +  D     EP I  EFFG Y+L NG +WPK +V    YR+R L+G+DSR ++ +L
Sbjct:  284 GEYEREIVIQDKQFANNGSLYFPALLSDPEALDFPTDPNI--EPTIFTEFFGDYILVNGMVWPKMNVEPTQYRLRLLNGSDSRFYIFKL 370
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_978.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A8M7X1_SALAI4.720e-1438.26Bilirubin oxidase n=7 Tax=Salinispora arenicola Ta... [more]
UPI00104138481.050e-1240.00multicopper oxidase domain-containing protein n=1 ... [more]
UPI001666CDAC1.440e-1237.70multicopper oxidase domain-containing protein n=1 ... [more]
UPI00192B79F22.620e-1241.96multicopper oxidase n=2 Tax=unclassified Clostridi... [more]
UPI001292959A2.670e-1241.49multicopper oxidase n=1 Tax=Zoogloea sp. 1C4 TaxID... [more]
UPI001BFD38AB5.000e-1237.30multicopper oxidase domain-containing protein n=1 ... [more]
A0A849R8K6_9GAMM6.810e-1242.11Multicopper oxidase family protein n=1 Tax=Methylo... [more]
A0A846P4T9_9BACT9.400e-1239.66Multicopper oxidase domain-containing protein n=1 ... [more]
A0A6I4MNT4_9ACTN1.260e-1141.67Multicopper oxidase domain-containing protein n=3 ... [more]
A0A7C3CCB1_9BACT1.310e-1141.57T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_978contigC-australica_Contig_978:3145..4015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog391037.Sare_1405
PFAMsCu-oxidase,Cu-oxidase_2,Cu-oxidase_3
Model size329
Max annot lvl201174|Actinobacteria
KEGG rclassRC01983
KEGG koko:K08100
KEGG ReactionR02394
KEGG Pathwayko00860,ko01110,map00860,map01110
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.74e-15
EggNOG OGsCOG2132@1|root,COG2132@2|Bacteria,2GMJ4@201174|Actinobacteria,4DBBI@85008|Micromonosporales
EC1.3.3.5
DescriptionMulticopper oxidase
Cds size327
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588843.7799358-CDS-C-australica_Contig_978:3144..31741682588843.7799358-CDS-C-australica_Contig_978:3144..3174Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 3145..3174 +
1682588843.7961917-CDS-C-australica_Contig_978:3334..34481682588843.7961917-CDS-C-australica_Contig_978:3334..3448Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 3335..3448 +
1682588843.8074076-CDS-C-australica_Contig_978:3582..36321682588843.8074076-CDS-C-australica_Contig_978:3582..3632Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 3583..3632 +
1682588843.8178244-CDS-C-australica_Contig_978:3715..37781682588843.8178244-CDS-C-australica_Contig_978:3715..3778Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 3716..3778 +
1682588843.8288274-CDS-C-australica_Contig_978:3943..40131682588843.8288274-CDS-C-australica_Contig_978:3943..4013Chrysoparadoxa australica CS_1217CDSC-australica_Contig_978 3944..4013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_978.2.1prot_C-australica_Contig_978.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_978 3145..4013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_978.2.1

>prot_C-australica_Contig_978.2.1 ID=prot_C-australica_Contig_978.2.1|Name=mRNA_C-australica_Contig_978.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=109bp
GGCELEIVLQDRDFVREGSDKGRLAYDADFETTGEPLILPEFFGPYVLAN
GAIWPKFDVSQRWYRIRWLDGADSRTFLMQLVVEQNPDMDKVCGQVGHLL
PVTIIGTDQ
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mRNA from alignment at C-australica_Contig_978:3145..4015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_978.2.1 ID=mRNA_C-australica_Contig_978.2.1|Name=mRNA_C-australica_Contig_978.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=871bp|location=Sequence derived from alignment at C-australica_Contig_978:3145..4015+ (Chrysoparadoxa australica CS_1217)
GGTGGTTGCGAGTTGGAGATCGTCTTGCAGGTGTGCTGATAAGCCTGAGA
TGCTTTGCCACAGGCCCTCGGCCCGACCCAACGCAGTGAAGCACCCCTCC
TAACCACCTAACCAGATGTAACGGGCCTAGTTTACCTAGAAAATTGATCA
AAGATGACTGCAAACTGCAACTCACTTGTTTGTATTACAGGACCGTGACT
TTGTGCGAGAAGGATCAGATAAGGGTAGGCTTGCTTATGATGCCGACTTT
GAAACCACTGGAGAGCCACTGATTCTGCCAGAGTTCTTTGGGCCATATGT
GCTTGTGAGTTCCAGTATAACCTAGTCAAGCCCTAACACAACCTCAACGG
CAGCTCTGGCCCCTACTTGACCCAGACCAAAGCCTTGGGGGCAGTGAAGC
AAACCTTTTACTGCTCATAAAGTCAACTCATCCTACAGGCAAATGGAGCC
ATTTGGCCCAAGTTTGATGTGTCCCAGCGCTGGTATAGGTAAGATGATTG
CTCTGAACGACTAGCTTGCTTATGCTTCAATACTCACCACTAGATCCTTT
TGGCCCCTGCTTGCTCTTCAGAATCAGGTGGCTTGATGGGGCTGACTCCA
GGACATTTTTGATGCAGCTTGTGGTTGAACAGAAGTAAGCACCCGCAACT
TGTAACCTAAATTAGCCAGCCTTGATATATCACTCTATGGCGCTGATTCC
TTACATCATGACTCAGCTGAGGCTGCTTGGTTGCTAAGCCACATGTCAGC
ATCTGGATACATAACGCTTGCTCTTACCACTTCCCCATCTATCTGGCAGC
CCTGATATGGATAAGGTCTGTGGACAGGTCGGCCATCTACTTCCAGTTAC
TATCATTGGTACCGACCAAGG
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Coding sequence (CDS) from alignment at C-australica_Contig_978:3145..4015+

>mRNA_C-australica_Contig_978.2.1 ID=mRNA_C-australica_Contig_978.2.1|Name=mRNA_C-australica_Contig_978.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=327bp|location=Sequence derived from alignment at C-australica_Contig_978:3145..4015+ (Chrysoparadoxa australica CS_1217)
GGTGGTTGCGAGTTGGAGATCGTCTTGCAGGACCGTGACTTTGTGCGAGA
AGGATCAGATAAGGGTAGGCTTGCTTATGATGCCGACTTTGAAACCACTG
GAGAGCCACTGATTCTGCCAGAGTTCTTTGGGCCATATGTGCTTGCAAAT
GGAGCCATTTGGCCCAAGTTTGATGTGTCCCAGCGCTGGTATAGAATCAG
GTGGCTTGATGGGGCTGACTCCAGGACATTTTTGATGCAGCTTGTGGTTG
AACAGAACCCTGATATGGATAAGGTCTGTGGACAGGTCGGCCATCTACTT
CCAGTTACTATCATTGGTACCGACCAA
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