mRNA_C-australica_Contig_9762.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9762.1.1
Unique NamemRNA_C-australica_Contig_9762.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: A0A222E462_9RHOB (Leucyl/phenylalanyl-tRNA--protein transferase n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E462_9RHOB)

HSP 1 Score: 251 bits (642), Expect = 2.750e-83
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVGA 378
            MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVGA
Sbjct:    1 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVGA 121
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: A0A0B3RJG4_9RHOB (Leucyl/phenylalanyl-tRNA--protein transferase n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3RJG4_9RHOB)

HSP 1 Score: 225 bits (573), Expect = 9.860e-73
Identity = 105/126 (83.33%), Postives = 117/126 (92.86%), Query Frame = 1 
Query:    1 DFTYLMSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVGA 378
            D+  +MSVTPELLL AYRTGIFPMAER DDP+IFWVDPRRRG+LPL+GFR+SRSLAKRLRRDDY+VTLNADF+GVIDGCADR+ETWIN+EIRDLYHAL  +G AH+LEVWM G LVGGVYGVTVGA
Sbjct:    9 DYPAVMSVTPELLLQAYRTGIFPMAERRDDPDIFWVDPRRRGVLPLEGFRVSRSLAKRLRRDDYEVTLNADFSGVIDGCADREETWINSEIRDLYHALFAQGHAHSLEVWMEGALVGGVYGVTVGA 134
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BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: UPI001C969994 (leucyl/phenylalanyl-tRNA--protein transferase n=3 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C969994)

HSP 1 Score: 220 bits (561), Expect = 4.770e-71
Identity = 104/121 (85.95%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVGA 378
            MSVTP+LLL AYRTGIFPMAER DDP+IFWVDPRRRGILPLDGFR+SRSLAKRLRR DY VTLN DF+GVIDGCADR ETWINAEIRDLYHALH +G AH+LEVWM G LVGGVYGV VGA
Sbjct:    1 MSVTPDLLLQAYRTGIFPMAERQDDPDIFWVDPRRRGILPLDGFRVSRSLAKRLRRQDYSVTLNTDFSGVIDGCADRQETWINAEIRDLYHALHAQGHAHSLEVWMDGTLVGGVYGVAVGA 121
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: A0A238KYJ7_9RHOB (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238KYJ7_9RHOB)

HSP 1 Score: 216 bits (551), Expect = 1.630e-69
Identity = 102/121 (84.30%), Postives = 109/121 (90.08%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVGA 378
            MSVTP+LLLHAYRTGIFPMAER DDPEIFWVDPRRRG+LPLDGF ISRSLA+RLRR  Y  TLNADF GVIDGCA+R ETWINAEIR LYHALH++G AH+LEVWM G LVGGVYGVTVGA
Sbjct:    1 MSVTPDLLLHAYRTGIFPMAERRDDPEIFWVDPRRRGVLPLDGFHISRSLARRLRRGGYSATLNADFLGVIDGCAERQETWINAEIRALYHALHVQGHAHSLEVWMDGALVGGVYGVTVGA 121
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: UPI001AE05A38 (leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001AE05A38)

HSP 1 Score: 209 bits (532), Expect = 1.010e-66
Identity = 101/120 (84.17%), Postives = 107/120 (89.17%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVG 375
            M+VTPELLLHAYR+GIFPMAERHDDPEIFWVDPRRRG+LPLD F +SRSLAKRLRR DY VTLNADF GVIDGCADR ETWINAEIR LY ALH  G+AH+LEVW  G LVGGVYGVTVG
Sbjct:    1 MNVTPELLLHAYRSGIFPMAERHDDPEIFWVDPRRRGVLPLDSFHVSRSLAKRLRRMDYAVTLNADFQGVIDGCADRAETWINAEIRALYGALHDLGQAHSLEVWQDGTLVGGVYGVTVG 120
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: A0A0W7WFD2_9RHOB (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WFD2_9RHOB)

HSP 1 Score: 200 bits (509), Expect = 3.600e-63
Identity = 93/120 (77.50%), Postives = 105/120 (87.50%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVG 375
            MSVT ELLLHAYR+GIFPMAE+ DDP++FWVDPRRRGILPLDGF ISRSLA+RLRR DY+VTLNADF GV++GCADR ETWIN  IR L+  LH+ G AH+LEVWM G+L GGVYGVTVG
Sbjct:    1 MSVTAELLLHAYRSGIFPMAEQRDDPDLFWVDPRRRGILPLDGFHISRSLARRLRRQDYRVTLNADFAGVMEGCADRPETWINETIRALFDELHVTGHAHSLEVWMEGQLAGGVYGVTVG 120
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: A0A2T6ABH3_9RHOB (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Allosediminivita pacifica TaxID=1267769 RepID=A0A2T6ABH3_9RHOB)

HSP 1 Score: 200 bits (508), Expect = 4.950e-63
Identity = 94/121 (77.69%), Postives = 106/121 (87.60%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVGA 378
            MS+TPELLLHAYR+GIFPMAE  DDP+IFWVDPR RGI PLDGF ISRSLA+RLRRDDY+VTLN  F  VIDGCADRDETWINAEIR LY  LH +G+AH++EVWM G+LVGGVYGV +G+
Sbjct:    1 MSMTPELLLHAYRSGIFPMAETRDDPDIFWVDPRWRGIFPLDGFHISRSLARRLRRDDYEVTLNRAFERVIDGCADRDETWINAEIRALYTELHRDGQAHSIEVWMEGDLVGGVYGVVIGS 121
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: A0A8J8B7Q1_9RHOB (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J8B7Q1_9RHOB)

HSP 1 Score: 199 bits (505), Expect = 1.410e-62
Identity = 91/120 (75.83%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVG 375
            M ++P+LLLHAYR+GIFPMAE  DDPE+FWVDPRRRG+LPLDGFR+SRSLAKRLRRDDY+VTLN DF GV++GCADR ETWIN  IRDLY  LH  G AH+LEVW  G LVGGVYGV +G
Sbjct:    1 MDLSPDLLLHAYRSGIFPMAEHRDDPEVFWVDPRRRGVLPLDGFRVSRSLAKRLRRDDYQVTLNRDFLGVLEGCADRTETWINPTIRDLYFDLHSLGHAHSLEVWQDGALVGGVYGVVIG 120
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: A0A1H3JNI2_9RHOB (Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Citreimonas salinaria TaxID=321339 RepID=A0A1H3JNI2_9RHOB)

HSP 1 Score: 198 bits (503), Expect = 3.130e-62
Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 1 
Query:   22 VTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVG 375
            +TP+LLLHAYR+GIFPMAERHDDPEIFWVDPRRRGI+PLDGFRISRSLA+RLRRDDY VTL+  F  V+D CADR ETWIN EIR LY  LH +G+AH+LEVWM G+L GGVYGV +G
Sbjct:    6 ITPQLLLHAYRSGIFPMAERHDDPEIFWVDPRRRGIIPLDGFRISRSLARRLRRDDYSVTLDRAFEDVVDACADRSETWINDEIRSLYTQLHHQGQAHSLEVWMDGQLAGGVYGVCIG 123
[Close]
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Match: UPI000EF4F9AC (leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF4F9AC)

HSP 1 Score: 196 bits (498), Expect = 1.640e-61
Identity = 95/120 (79.17%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:   16 MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSLAKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAHALEVWMAGELVGGVYGVTVG 375
            M+VT +LLLHAYR+GIFPMAE  DDPEIFWV+PRRRGILPLDGF ISRSLAKRLRR+DY VTLNADF GVIDGCADR ETWIN EIR LY  L  + +AH+LEVW  G LVGGVYGVTVG
Sbjct:    1 MTVTTDLLLHAYRSGIFPMAEHRDDPEIFWVEPRRRGILPLDGFHISRSLAKRLRRNDYDVTLNADFQGVIDGCADRQETWINREIRRLYSELFDQSQAHSLEVWADGALVGGVYGVTVG 120
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9762.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E462_9RHOB2.750e-83100.00Leucyl/phenylalanyl-tRNA--protein transferase n=3 ... [more]
A0A0B3RJG4_9RHOB9.860e-7383.33Leucyl/phenylalanyl-tRNA--protein transferase n=5 ... [more]
UPI001C9699944.770e-7185.95leucyl/phenylalanyl-tRNA--protein transferase n=3 ... [more]
A0A238KYJ7_9RHOB1.630e-6984.30Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
UPI001AE05A381.010e-6684.17leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A0W7WFD2_9RHOB3.600e-6377.50Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A2T6ABH3_9RHOB4.950e-6377.69Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A8J8B7Q1_9RHOB1.410e-6275.83Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
A0A1H3JNI2_9RHOB3.130e-6277.12Leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]
UPI000EF4F9AC1.640e-6179.17leucyl/phenylalanyl-tRNA--protein transferase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9762contigC-australica_Contig_9762:1..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog388399.SSE37_10637
Preferred nameaat
PFAMsLeu_Phe_trans
Model size378
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00055,RC00064
KEGG koko:K00684
KEGG ReactionR03813,R11443,R11444
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008914,GO:0016740,GO:0016746,GO:0016755,GO:0044424,GO:0044464,GO:0140096
Exons1
Evalue1.52e-61
EggNOG OGsCOG2360@1|root,COG2360@2|Bacteria,1R9W8@1224|Proteobacteria,2U59K@28211|Alphaproteobacteria
EC2.3.2.6
DescriptionFunctions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
Cds size363
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.8739054-CDS-C-australica_Contig_9762:0..3631682588842.8739054-CDS-C-australica_Contig_9762:0..363Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9762 1..363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.8858035-UTR-C-australica_Contig_9762:363..3781682588842.8858035-UTR-C-australica_Contig_9762:363..378Chrysoparadoxa australica CS_1217UTRC-australica_Contig_9762 364..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9762.1.1prot_C-australica_Contig_9762.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9762 1..363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9762.1.1

>prot_C-australica_Contig_9762.1.1 ID=prot_C-australica_Contig_9762.1.1|Name=mRNA_C-australica_Contig_9762.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=121bp
MSVTPELLLHAYRTGIFPMAERHDDPEIFWVDPRRRGILPLDGFRISRSL
AKRLRRDDYKVTLNADFTGVIDGCADRDETWINAEIRDLYHALHIEGRAH
ALEVWMAGELVGGVYGVTVGA
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mRNA from alignment at C-australica_Contig_9762:1..378-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9762.1.1 ID=mRNA_C-australica_Contig_9762.1.1|Name=mRNA_C-australica_Contig_9762.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=378bp|location=Sequence derived from alignment at C-australica_Contig_9762:1..378- (Chrysoparadoxa australica CS_1217)
GATTTCACATACCTCATGAGCGTTACCCCCGAACTGCTGCTTCATGCCTA
TCGCACCGGAATTTTTCCGATGGCAGAACGTCATGACGATCCGGAAATCT
TTTGGGTCGATCCCCGGCGTCGCGGCATTCTGCCTTTGGACGGGTTTCGC
ATTTCACGCAGTCTGGCCAAGAGGTTGCGCCGAGATGATTACAAGGTCAC
CTTGAACGCCGACTTCACTGGCGTGATCGACGGATGCGCAGACCGCGATG
AAACATGGATCAACGCAGAAATCCGCGACCTTTACCATGCGCTGCACATC
GAGGGCCGCGCCCACGCGTTAGAGGTGTGGATGGCGGGCGAGTTGGTCGG
CGGCGTCTATGGCGTGACCGTGGGCGCG
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Coding sequence (CDS) from alignment at C-australica_Contig_9762:1..378-

>mRNA_C-australica_Contig_9762.1.1 ID=mRNA_C-australica_Contig_9762.1.1|Name=mRNA_C-australica_Contig_9762.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=363bp|location=Sequence derived from alignment at C-australica_Contig_9762:1..378- (Chrysoparadoxa australica CS_1217)
ATGAGCGTTACCCCCGAACTGCTGCTTCATGCCTATCGCACCGGAATTTT
TCCGATGGCAGAACGTCATGACGATCCGGAAATCTTTTGGGTCGATCCCC
GGCGTCGCGGCATTCTGCCTTTGGACGGGTTTCGCATTTCACGCAGTCTG
GCCAAGAGGTTGCGCCGAGATGATTACAAGGTCACCTTGAACGCCGACTT
CACTGGCGTGATCGACGGATGCGCAGACCGCGATGAAACATGGATCAACG
CAGAAATCCGCGACCTTTACCATGCGCTGCACATCGAGGGCCGCGCCCAC
GCGTTAGAGGTGTGGATGGCGGGCGAGTTGGTCGGCGGCGTCTATGGCGT
GACCGTGGGCGCG
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