mRNA_C-australica_Contig_976.4.2 (mRNA) Chrysoparadoxa australica CS_1217
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A2V7WZ83_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7WZ83_9BACT) HSP 1 Score: 86.7 bits (213), Expect = 2.040e-16 Identity = 47/110 (42.73%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 405 EKAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHI----GDHLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASAS 701 +KA FA GC+WG EA FR +PGV STRVG++GGK NP Y+ + H E VEV + Y LL V +D DWG +Y IF S +Q A AS Sbjct: 2 QKATFAAGCFWGVEATFRQIPGVISTRVGYIGGKTENPTYKEVCTDGTGHAEAVEVEFDPSKVAYNELLQVFWENHDPTQVNRQGPDWGTQYRTAIFFHSPEQQAQAEAS 111
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A2V9Y6E8_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9Y6E8_9BACT) HSP 1 Score: 86.7 bits (213), Expect = 2.040e-16 Identity = 49/112 (43.75%), Postives = 60/112 (53.57%), Query Frame = 3 Query: 405 EKAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHI----GDHLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASASGE 707 EKA FA GC+WG EA FR +PGVTSTRVG++GG NP Y+ + H E VEV + Y +LL V +D DWG +Y IF S +Q A AS E Sbjct: 2 EKATFAAGCFWGVEATFRQLPGVTSTRVGYIGGHTENPSYKEVCTDRTGHAEAVEVEFDPAKIPYTDLLKVFWENHDPTQVNRQGPDWGTQYRTAIFFHSPEQQAQALASKE 113
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A534TJB4_9DELT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534TJB4_9DELT) HSP 1 Score: 88.2 bits (217), Expect = 2.210e-16 Identity = 56/139 (40.29%), Postives = 71/139 (51.08%), Query Frame = 3 Query: 324 GKPKPEIVPKQGGYSPAEIAALEPAGSEKAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHIGD----HLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASASGE 707 G+ +P VP Q A + P GSE+A FA+GC+WG E F +V GV +T VG+ GG +NP Y + H EVV VVY Y +LL V +D D G +Y I+TTSE Q K A AS E Sbjct: 18 GRDEPVRVPPQHVVLGAPLLPPFPDGSERAIFAMGCFWGAERKFWNVDGVYTTAVGYAGGFTKNPTYREVCSGQTGHAEVVLVVYDPKRVTYADLLRVFWENHDPTQGMRQGNDVGTQYRSAIYTTSEAQKKAAEASRE 156
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: UPI001FCD94F4 (peptide-methionine (S)-S-oxide reductase MsrA n=1 Tax=Micromonospora echinofusca TaxID=47858 RepID=UPI001FCD94F4) HSP 1 Score: 87.0 bits (214), Expect = 5.730e-16 Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 3 Query: 393 PAGSEKAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHIGD----HLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASASGEGWSGTPVVRTT 740 P GS+ A F +GC+WG E F ++PGV +T VG+ GG +NP YE + H EVV+VVY Y +LL V +D D G +Y I+TT+++Q A AS E ++ P+VR T Sbjct: 37 PTGSQVAVFGMGCFWGAERLFWTLPGVITTSVGYAGGFTQNPTYEEVCSGLTGHTEVVQVVYDPARIAYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYTTTDEQAAAARASREAFN--PIVRAT 161
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A2V9QZN2_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9QZN2_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 2.420e-15 Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 3 Query: 408 KAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHI----GDHLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASAS 701 KA FA GC+WG EA FR +PGVT TRVG+ GG+ +NP Y+ + H E VEV Y Y LLNV +D D+G +Y IF S +Q + A AS Sbjct: 3 KATFAAGCFWGVEATFRQIPGVTGTRVGYTGGEMKNPTYKDVCTDRTGHAEAVEVDYDPAKVSYEALLNVFWENHDPTQLNRQGPDFGTQYRSAIFYHSPEQEQAAHAS 111
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A1N7E0T0_9EURY (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Natronorubrum thiooxidans TaxID=308853 RepID=A0A1N7E0T0_9EURY) HSP 1 Score: 84.7 bits (208), Expect = 4.210e-15 Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 3 Query: 393 PAGSEKAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHIGDHLEVVEVVYTGGPTVYRNLLNVAARTYDFVDWGHRYE-RGIFTTSED-QYKLAS 695 P+ +E A F +GC+WG +A F ++ GV TRVG+ GG NP Y +GDH EVV+VVY G Y LL +D+ H+ + RG+ T +D Q+++A+ Sbjct: 23 PSETETATFGMGCFWGPDARFGAMEGVVRTRVGYAGGTTPNPRYYSLGDHTEVVQVVYDPGTVTYDELLEDCWANHDWTSTAHKRQYRGVILTHDDHQHEVAT 125
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A2V9LLL8_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9LLL8_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 4.630e-15 Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = 3 Query: 405 EKAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHI----GDHLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASASGE 707 EKA FA GC+WG EA FR VPGVT+T VG+ GGK +NP Y+ + H E VEV + Y LL V + +D D G +Y IFT +Q A AS E Sbjct: 2 EKATFAAGCFWGVEAAFRQVPGVTATSVGYTGGKLKNPSYQDVCTDRTGHAEAVEVQFEPSKVTYEQLLEVFWQCHDPTTLDRQGPDVGTQYRSAIFTHDAEQEAAARASKE 113
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A2V9NI39_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9NI39_9BACT) HSP 1 Score: 82.0 bits (201), Expect = 8.630e-15 Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 3 Query: 408 KAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHI----GDHLEVVEVVYTGGPTVYRNLLNVAARTYD-------FVDWGHRYERGIFTTSEDQYKLASAS 701 KA FA GC+WG EA FR +PGVT+TRVG++GG ++P Y+ + H E VEV Y Y +LLNV +D D+G +Y IF S +Q + A AS Sbjct: 3 KATFAAGCFWGVEATFRQIPGVTATRVGYIGGNLKDPTYKDVCTDSTGHAEAVEVEYDPAKVSYGDLLNVFWENHDPSQLNRQGPDFGTQYRSAIFYHSPEQEQAARAS 111
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A2V9WQI0_9BACT (Peptide methionine sulfoxide reductase MsrA n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9WQI0_9BACT) HSP 1 Score: 82.0 bits (201), Expect = 8.840e-15 Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 3 Query: 408 KAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHI----GDHLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASASGE 707 KA FA GC+WG EA FR +PGV STRVG++GG+ NP Y+ + H E VEV Y Y L+ V +D DWG +Y IF + +Q A+AS E Sbjct: 3 KATFAAGCFWGVEATFRQIPGVISTRVGYIGGRTDNPTYKEVCTDRTGHAEAVEVEYDPAKVSYDALVKVFWENHDPTQLNRQGPDWGTQYRSAIFFHTPEQKGAAAASKE 113
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Match: A0A0M2S4Z8_9ACTN (Peptide methionine sulfoxide reductase MsrA n=58 Tax=Micromonosporaceae TaxID=28056 RepID=A0A0M2S4Z8_9ACTN) HSP 1 Score: 83.6 bits (205), Expect = 1.020e-14 Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 3 Query: 369 PAEIAALEPAGSEKAYFAVGCYWGGEANFRSVPGVTSTRVGFMGGKQRNPDYEHIGD----HLEVVEVVYTGGPTVYRNLLNVAARTYDFV-------DWGHRYERGIFTTSEDQYKLASASGEGWSGTPVV 731 P+ + PAG++ A F +GC+WG E F ++PGV +T G+ GG NP YE + H EVV+VVY Y +LL V +D D G +Y I+TT+++Q +A AS + ++ P+V Sbjct: 34 PSSLTGPFPAGAQVAVFGMGCFWGAERLFWTLPGVITTSAGYAGGYTPNPTYEEVCSGLTGHAEVVQVVYDPTKIAYEDLLKVFWENHDPTQGLRQGNDVGSQYRSAIYTTTDEQLAVAQASRDAFA--PIV 163 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_976.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_976.4.2 >prot_C-australica_Contig_976.4.2 ID=prot_C-australica_Contig_976.4.2|Name=mRNA_C-australica_Contig_976.4.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=290bp MRYSAGELLAAMSLMSSYSFSLAFLCHTPCSMSLEEPRSSAQTRRDVLITback to top mRNA from alignment at C-australica_Contig_976:8299..10115- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_976.4.2 ID=mRNA_C-australica_Contig_976.4.2|Name=mRNA_C-australica_Contig_976.4.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1817bp|location=Sequence derived from alignment at C-australica_Contig_976:8299..10115- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_976:8299..10115- >mRNA_C-australica_Contig_976.4.2 ID=mRNA_C-australica_Contig_976.4.2|Name=mRNA_C-australica_Contig_976.4.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=870bp|location=Sequence derived from alignment at C-australica_Contig_976:8299..10115- (Chrysoparadoxa australica CS_1217)back to top |