mRNA_C-australica_Contig_9757.1.1 (mRNA) Chrysoparadoxa australica CS_1217
|
Overview
Homology
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A2D4S9W6_9GAMM (Uncharacterized protein n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4S9W6_9GAMM) HSP 1 Score: 101 bits (252), Expect = 1.990e-25 Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 1
Query: 58 LPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELASER 264
LP +G + VR RFG P R PAVGDPPITRWDY +FRVFFE++ VLHAVIPG FP I +RDEL S R
Sbjct: 98 LPQQGTTQAAVRARFGDPVRSFPAVGDPPITRWDYQNFRVFFEYNLVLHAVIPGAFPPISNRDELVSGR 166
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A423Q7T6_9GAMM (Uncharacterized protein n=4 Tax=Salinisphaera TaxID=180541 RepID=A0A423Q7T6_9GAMM) HSP 1 Score: 90.1 bits (222), Expect = 1.630e-21 Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELASER 264
P RG SM V +G P RRH VG PPITRWDY +R++FEHDR++HA++P + HRDELA R
Sbjct: 45 PPRGTSMARVEREYGEPRRRHAPVGQPPITRWDYPAYRLYFEHDRLIHALVPAAPAPVTHRDELAGPR 112
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: U2FSX2_9GAMM (Uncharacterized protein n=2 Tax=Salinisphaera shabanensis TaxID=180542 RepID=U2FSX2_9GAMM) HSP 1 Score: 90.1 bits (222), Expect = 3.280e-21 Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 1 TTGTVVAVPGGSDNAQP-----PALPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELAS 258
T GTV+ +P G + Q P+ P RG++ VR+++G P + VG+PPITRWDY +R++FE+D VLHAV+P F + H DEL S
Sbjct: 46 TRGTVLDMPAGENTVQGAATPRPSTPPRGMTKARVRQQYGEPQSKSQPVGNPPITRWDYPGYRLYFEYDHVLHAVVPEHFEPVAHGDELQS 136
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A2W4QXW9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QXW9_9PROT) HSP 1 Score: 87.4 bits (215), Expect = 1.250e-20 Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPG 219
P RG++M V +RFGAP RHPAVG PPITRWDY F VFFE+DRV+HAV+ G
Sbjct: 40 PSRGMTMSAVEKRFGAPTSRHPAVGQPPITRWDYPGFSVFFEYDRVIHAVVTG 92
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A522KGI3_9GAMM (Phosphodiesterase n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A522KGI3_9GAMM) HSP 1 Score: 87.4 bits (215), Expect = 2.100e-20 Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 13 VVAVPGGSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVG-----DPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELAS 258
V+ +P ++ A P +G +M V +GAP +++PAVG PPITRWDYA F VFFEHD V+ AVIPG P I+H DEL +
Sbjct: 27 VLDLPPSAETATTIDKPVKGSTMAAVEHHYGAPVKKYPAVGGGHPHQPPITRWDYAGFTVFFEHDHVVDAVIPGQPPAIQHSDELQT 113
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A534CN56_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534CN56_9GAMM) HSP 1 Score: 86.7 bits (213), Expect = 2.890e-20 Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGD 222
P RG++M V RFGAPA RHP VG PPITRWDY F VFFEHDRV+HAV D
Sbjct: 40 PKRGITMAQVEARFGAPATRHPTVGQPPITRWDYPGFSVFFEHDRVIHAVATAD 93
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A1Z4VS69_9GAMM (Uncharacterized protein n=2 Tax=Thiohalobacter TaxID=1273155 RepID=A0A1Z4VS69_9GAMM) HSP 1 Score: 86.3 bits (212), Expect = 3.300e-20 Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFP 228
P R SM +VR RFGAP H A+G+PPITRWDY DF V+FEHDRV+HAV+ D P
Sbjct: 39 PSRSSSMDSVRSRFGAPREAHAAIGEPPITRWDYPDFTVYFEHDRVIHAVVHRDQP 94
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A426QFU1_9GAMM (Uncharacterized protein n=1 Tax=Thiohalobacter thiocyanaticus TaxID=585455 RepID=A0A426QFU1_9GAMM) HSP 1 Score: 85.9 bits (211), Expect = 4.680e-20 Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 34 SDNAQPPALPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGD 222
+D+A P P RG SM+TVR RFG P PAVG+PPITRW Y DF V+FEHDRV+HAV+ D
Sbjct: 31 ADSAAVPT-PARGTSMETVRSRFGEPREALPAVGEPPITRWSYPDFTVYFEHDRVIHAVVRRD 92
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A3N0VIH7_9GAMM (Phosphodiesterase n=1 Tax=Stagnimonas aquatica TaxID=2689987 RepID=A0A3N0VIH7_9GAMM) HSP 1 Score: 86.3 bits (212), Expect = 5.990e-20 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 13 VVAVPGGSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVG-----DPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELAS 258
V+ +P ++ A P +G +M V ++G P ++HPAVG PPITRWDY F VFFEH V+ AVIPG P ++HRDEL +
Sbjct: 27 VLDLPAPTETAPHIDKPAKGSTMSAVERQYGQPLKKHPAVGGGRPQQPPITRWDYPGFTVFFEHQHVVDAVIPGQPPPVQHRDELQT 113
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A0S7Z1K8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_30 TaxID=1703404 RepID=A0A0S7Z1K8_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 1.370e-19 Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 31 GSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPG 219
G +A PA P RG +M V RFG P R++ AVGDPPITRWDY F VFFEH+ LHAVI G
Sbjct: 28 GDPSASVPARPARGATMAQVEARFGTPVRKYAAVGDPPITRWDYQGFSVFFEHNLALHAVIVG 90 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_9757.1.1 >prot_C-australica_Contig_9757.1.1 ID=prot_C-australica_Contig_9757.1.1|Name=mRNA_C-australica_Contig_9757.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=89bp TTGTVVAVPGGSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVGDPPITback to top mRNA from alignment at C-australica_Contig_9757:244..510+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_9757.1.1 ID=mRNA_C-australica_Contig_9757.1.1|Name=mRNA_C-australica_Contig_9757.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=267bp|location=Sequence derived from alignment at C-australica_Contig_9757:244..510+ (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_9757:244..510+ >mRNA_C-australica_Contig_9757.1.1 ID=mRNA_C-australica_Contig_9757.1.1|Name=mRNA_C-australica_Contig_9757.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=267bp|location=Sequence derived from alignment at C-australica_Contig_9757:244..510+ (Chrysoparadoxa australica CS_1217)back to top |