mRNA_C-australica_Contig_9757.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9757.1.1
Unique NamemRNA_C-australica_Contig_9757.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A2D4S9W6_9GAMM (Uncharacterized protein n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4S9W6_9GAMM)

HSP 1 Score: 101 bits (252), Expect = 1.990e-25
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   58 LPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELASER 264
            LP +G +   VR RFG P R  PAVGDPPITRWDY +FRVFFE++ VLHAVIPG FP I +RDEL S R
Sbjct:   98 LPQQGTTQAAVRARFGDPVRSFPAVGDPPITRWDYQNFRVFFEYNLVLHAVIPGAFPPISNRDELVSGR 166          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A423Q7T6_9GAMM (Uncharacterized protein n=4 Tax=Salinisphaera TaxID=180541 RepID=A0A423Q7T6_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 1.630e-21
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELASER 264
            P RG SM  V   +G P RRH  VG PPITRWDY  +R++FEHDR++HA++P     + HRDELA  R
Sbjct:   45 PPRGTSMARVEREYGEPRRRHAPVGQPPITRWDYPAYRLYFEHDRLIHALVPAAPAPVTHRDELAGPR 112          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: U2FSX2_9GAMM (Uncharacterized protein n=2 Tax=Salinisphaera shabanensis TaxID=180542 RepID=U2FSX2_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 3.280e-21
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 TTGTVVAVPGGSDNAQP-----PALPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELAS 258
            T GTV+ +P G +  Q      P+ P RG++   VR+++G P  +   VG+PPITRWDY  +R++FE+D VLHAV+P  F  + H DEL S
Sbjct:   46 TRGTVLDMPAGENTVQGAATPRPSTPPRGMTKARVRQQYGEPQSKSQPVGNPPITRWDYPGYRLYFEYDHVLHAVVPEHFEPVAHGDELQS 136          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A2W4QXW9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QXW9_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 1.250e-20
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPG 219
            P RG++M  V +RFGAP  RHPAVG PPITRWDY  F VFFE+DRV+HAV+ G
Sbjct:   40 PSRGMTMSAVEKRFGAPTSRHPAVGQPPITRWDYPGFSVFFEYDRVIHAVVTG 92          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A522KGI3_9GAMM (Phosphodiesterase n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A522KGI3_9GAMM)

HSP 1 Score: 87.4 bits (215), Expect = 2.100e-20
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   13 VVAVPGGSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVG-----DPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELAS 258
            V+ +P  ++ A     P +G +M  V   +GAP +++PAVG      PPITRWDYA F VFFEHD V+ AVIPG  P I+H DEL +
Sbjct:   27 VLDLPPSAETATTIDKPVKGSTMAAVEHHYGAPVKKYPAVGGGHPHQPPITRWDYAGFTVFFEHDHVVDAVIPGQPPAIQHSDELQT 113          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A534CN56_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534CN56_9GAMM)

HSP 1 Score: 86.7 bits (213), Expect = 2.890e-20
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGD 222
            P RG++M  V  RFGAPA RHP VG PPITRWDY  F VFFEHDRV+HAV   D
Sbjct:   40 PKRGITMAQVEARFGAPATRHPTVGQPPITRWDYPGFSVFFEHDRVIHAVATAD 93          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A1Z4VS69_9GAMM (Uncharacterized protein n=2 Tax=Thiohalobacter TaxID=1273155 RepID=A0A1Z4VS69_9GAMM)

HSP 1 Score: 86.3 bits (212), Expect = 3.300e-20
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   61 PGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGDFP 228
            P R  SM +VR RFGAP   H A+G+PPITRWDY DF V+FEHDRV+HAV+  D P
Sbjct:   39 PSRSSSMDSVRSRFGAPREAHAAIGEPPITRWDYPDFTVYFEHDRVIHAVVHRDQP 94          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A426QFU1_9GAMM (Uncharacterized protein n=1 Tax=Thiohalobacter thiocyanaticus TaxID=585455 RepID=A0A426QFU1_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 4.680e-20
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   34 SDNAQPPALPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPGD 222
            +D+A  P  P RG SM+TVR RFG P    PAVG+PPITRW Y DF V+FEHDRV+HAV+  D
Sbjct:   31 ADSAAVPT-PARGTSMETVRSRFGEPREALPAVGEPPITRWSYPDFTVYFEHDRVIHAVVRRD 92          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A3N0VIH7_9GAMM (Phosphodiesterase n=1 Tax=Stagnimonas aquatica TaxID=2689987 RepID=A0A3N0VIH7_9GAMM)

HSP 1 Score: 86.3 bits (212), Expect = 5.990e-20
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   13 VVAVPGGSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVG-----DPPITRWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELAS 258
            V+ +P  ++ A     P +G +M  V  ++G P ++HPAVG      PPITRWDY  F VFFEH  V+ AVIPG  P ++HRDEL +
Sbjct:   27 VLDLPAPTETAPHIDKPAKGSTMSAVERQYGQPLKKHPAVGGGRPQQPPITRWDYPGFTVFFEHQHVVDAVIPGQPPPVQHRDELQT 113          
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Match: A0A0S7Z1K8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_30 TaxID=1703404 RepID=A0A0S7Z1K8_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-19
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   31 GSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVGDPPITRWDYADFRVFFEHDRVLHAVIPG 219
            G  +A  PA P RG +M  V  RFG P R++ AVGDPPITRWDY  F VFFEH+  LHAVI G
Sbjct:   28 GDPSASVPARPARGATMAQVEARFGTPVRKYAAVGDPPITRWDYQGFSVFFEHNLALHAVIVG 90          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9757.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4S9W6_9GAMM1.990e-2566.67Uncharacterized protein n=1 Tax=Salinisphaeraceae ... [more]
A0A423Q7T6_9GAMM1.630e-2154.41Uncharacterized protein n=4 Tax=Salinisphaera TaxI... [more]
U2FSX2_9GAMM3.280e-2145.05Uncharacterized protein n=2 Tax=Salinisphaera shab... [more]
A0A2W4QXW9_9PROT1.250e-2067.92Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A522KGI3_9GAMM2.100e-2048.28Phosphodiesterase n=1 Tax=Sinobacteraceae bacteriu... [more]
A0A534CN56_9GAMM2.890e-2068.52Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1Z4VS69_9GAMM3.300e-2064.29Uncharacterized protein n=2 Tax=Thiohalobacter Tax... [more]
A0A426QFU1_9GAMM4.680e-2061.90Uncharacterized protein n=1 Tax=Thiohalobacter thi... [more]
A0A3N0VIH7_9GAMM5.990e-2045.98Phosphodiesterase n=1 Tax=Stagnimonas aquatica Tax... [more]
A0A0S7Z1K8_9GAMM1.370e-1960.32Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9757contigC-australica_Contig_9757:244..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1323663.AROI01000009_gene3609
Model size267
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.61e-19
EggNOG OGs2ENKU@1|root,33G87@2|Bacteria,1NMH6@1224|Proteobacteria,1SGDI@1236|Gammaproteobacteria
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588842.013044-CDS-C-australica_Contig_9757:243..5101682588842.013044-CDS-C-australica_Contig_9757:243..510Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9757 244..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9757.1.1prot_C-australica_Contig_9757.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9757 244..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9757.1.1

>prot_C-australica_Contig_9757.1.1 ID=prot_C-australica_Contig_9757.1.1|Name=mRNA_C-australica_Contig_9757.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=89bp
TTGTVVAVPGGSDNAQPPALPGRGVSMQTVRERFGAPARRHPAVGDPPIT
RWDYADFRVFFEHDRVLHAVIPGDFPTIRHRDELASER*
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mRNA from alignment at C-australica_Contig_9757:244..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9757.1.1 ID=mRNA_C-australica_Contig_9757.1.1|Name=mRNA_C-australica_Contig_9757.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=267bp|location=Sequence derived from alignment at C-australica_Contig_9757:244..510+ (Chrysoparadoxa australica CS_1217)
ACCACCGGCACCGTGGTCGCGGTACCCGGTGGCTCTGACAACGCGCAGCC GCCGGCGTTGCCGGGTCGTGGCGTCTCCATGCAGACCGTGCGTGAGCGCT TCGGCGCGCCGGCACGTCGACATCCGGCGGTGGGCGACCCGCCGATCACC CGCTGGGACTATGCCGATTTCCGGGTGTTCTTCGAACACGACCGGGTGCT GCATGCAGTGATCCCGGGCGATTTCCCCACCATCCGCCACCGCGACGAAC TCGCCAGCGAGCGCTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_9757:244..510+

>mRNA_C-australica_Contig_9757.1.1 ID=mRNA_C-australica_Contig_9757.1.1|Name=mRNA_C-australica_Contig_9757.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=267bp|location=Sequence derived from alignment at C-australica_Contig_9757:244..510+ (Chrysoparadoxa australica CS_1217)
ACCACCGGCACCGTGGTCGCGGTACCCGGTGGCTCTGACAACGCGCAGCC
GCCGGCGTTGCCGGGTCGTGGCGTCTCCATGCAGACCGTGCGTGAGCGCT
TCGGCGCGCCGGCACGTCGACATCCGGCGGTGGGCGACCCGCCGATCACC
CGCTGGGACTATGCCGATTTCCGGGTGTTCTTCGAACACGACCGGGTGCT
GCATGCAGTGATCCCGGGCGATTTCCCCACCATCCGCCACCGCGACGAAC
TCGCCAGCGAGCGCTGA
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