mRNA_C-australica_Contig_973.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_973.7.1
Unique NamemRNA_C-australica_Contig_973.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: D7FL94_ECTSI (Non-specific serine/threonine protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL94_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 5.910e-145
Identity = 232/374 (62.03%), Postives = 284/374 (75.94%), Query Frame = 3
Query:  375 SHLVVNSISKAEKAGATRSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEGQEGARIAALV------AEA-------------QGEELTSEEQVQEAVFMSSFIPRNLHEVEHIEREAKAIA-----GGETTAHAIAISHMLKPDPGEEE--AIVEAVQP 1418
            S  V N I ++EK+G   SRHTGRDDRAT EQVMDPRTR++LFKLLN+GF ++I+GCLSTGKEANVYYAVG  G+EYA K+YKTSI+VFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNL+RL AAGIPSP+PVLIK+NVL+MDFLGK GWP+PRLRD+ L  ++M   Y QCV  MR M+ KC+LVHGDLSEYNLL  EG LIFIDVSQSME+DHPRAMDFLRMDC+NVT FF++KG      R L++FV    L E +    +  ++      AEA             +G E+ +E ++Q+AVFMSS+IPR+LHEV+++E     I      GG+ TA+AIA++HMLK DP +++  AI ++  P
Sbjct:  167 SQSVRNDIKRSEKSGEKTSRHTGRDDRATVEQVMDPRTRMILFKLLNQGFFRQIDGCLSTGKEANVYYAVGGEGKEYAIKVYKTSILVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLKRLVAAGIPSPAPVLIKNNVLVMDFLGKAGWPAPRLRDVQLGPKKMKDAYIQCVIGMRNMYQKCRLVHGDLSEYNLLYMEGLLIFIDVSQSMENDHPRAMDFLRMDCRNVTAFFKKKGAQPAAARSLFDFVIDSDLQEDRXXXXLKEVLEKEFDEAEAFEDESKNGGVKSEKGAEMAAELEIQDAVFMSSYIPRSLHEVDNVEDRQSRIQQEQREGGKGTAYAIAVTHMLKQDPKKDKHPAINDSTSP 540          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: A0A6U0UH90_9STRA (Serine/threonine-protein kinase RIO1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UH90_9STRA)

HSP 1 Score: 396 bits (1017), Expect = 1.310e-129
Identity = 202/355 (56.90%), Postives = 258/355 (72.68%), Query Frame = 3
Query:  375 SHLVVNSISKAEKAGATRSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEGQEGARIAALVAEAQGEELTSEEQVQEAVFMSSFIPRNLHEVEHIEREAKAIAGG-ETTAHAIAISHMLKPDPGEEEAIVEAVQPEGEKNE 1436
            SH V   + K+EK G  RS +  RD+RATSEQV+DP+TR+VLFK+L++GFL+ + GCLSTGKEANVYYAVG  G+E A KIYKTSI+VFKDRDKYVSGE+R+R+GYCRSNPRKMV VWAEKE+RNLRRLQ AGIP P PVL+K NVL+M FLG EGWP+PRL+D +LS +R+   Y Q V  MR MFH+C+LVHGDLSEYN+L H G+++FIDVSQS+EHDHP A +FLRMDC+NV  FF++ G   M +  L+ F+  DG+ E Q  AR+  L+ +           V EAVFMS+ IPR+L E+E+ E EA+ +  G    A A A+  ML  D   ++  ++     GE+ +
Sbjct:   23 SHSVNKDVVKSEKLGVKRSLYNSRDERATSEQVLDPKTRMVLFKMLSRGFLRELYGCLSTGKEANVYYAVGGAGEELAIKIYKTSILVFKDRDKYVSGEWRFRNGYCRSNPRKMVSVWAEKEIRNLRRLQDAGIPCPEPVLLKRNVLVMKFLGTEGWPAPRLKDANLSLKRLQRCYWQVVRQMRLMFHRCRLVHGDLSEYNMLYHNGEVVFIDVSQSVEHDHPEAFNFLRMDCQNVNAFFKKMGLEPMPVNELFGFIIDDGIEEDQMDARLEELMLQEN-----DRNAVDEAVFMSTHIPRSLFELENHEEEARLVDEGLREPAFAAAVRRMLAVDLRPQDGEMDPSDSSGEEGD 372          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: I2CQR8_NANGC (Serine/threonine-protein kinase RIO1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQR8_NANGC)

HSP 1 Score: 390 bits (1002), Expect = 1.060e-126
Identity = 215/420 (51.19%), Postives = 275/420 (65.48%), Query Frame = 3
Query:  255 EGEMDGMESSLLREGGATKTGVGATGLKQMAAKMDTAPRHSHLVVN-------SISKAEKAGATRSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEGQEGARIAALVAEAQGEELTS---------------------EEQVQEAVFMSSFIPRNLHEVEHIEREAKAIAGGETT-AHAIAISHMLKPDPGEEEAIVEAVQPEGE 1427
            E E   +E  LL EG     G G  G    +A    A   SH  VN        I+++E+    R  HTGRD+RAT+EQV+DPRTRL+L++LL+KGFL  I+GCLSTGKEANVYYA    G+ YA K++KTSI+VFKDRD+YVSGE+R+RHGYCRSNPRKMVK+WAEKEMRNLRRL AAGIP+P PV++K +VL+MDF+G  GWP+PRL+D+ L  RR+   Y  C+ +MR + H C+LVHGDLSEYNLL HEG++I IDVSQS+EHDHP+A DFLR DC NV  FF+R+G  V G RR ++FV   GL   QE  + A    +   +E                        +E+ +EAVFM S+IPR+LHE+ +   EA+ I  GE    +A A+  ML   P ++E    A + EGE
Sbjct:   88 EDEYADLEGLLLGEGSEAMLGGGTRGWGGASAAAAAARLESHRSVNLSQSVRNDITRSERTAEKRVTHTGRDERATTEQVLDPRTRLILWRLLSKGFLASIDGCLSTGKEANVYYAQDPAGKAYAIKVFKTSILVFKDRDRYVSGEFRFRHGYCRSNPRKMVKLWAEKEMRNLRRLAAAGIPAPRPVVLKGHVLVMDFVGTGGWPAPRLKDVQLGPRRLEEAYWSCLGYMRRLHHDCRLVHGDLSEYNLLYHEGQVIVIDVSQSVEHDHPQAWDFLRKDCLNVNAFFQRRGVRVAGTRRTFDFVVDGGLGTSQEEVKAALKSLKETVDEXXXXXXXXXXXXXXXXXXXXXXXLKERQEEAVFMKSYIPRSLHELPNSFEEARRIEAGEREQVYAAAVREMLV--PAKQERRQAACESEGE 505          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: W7T9B1_9STRA (Serine/threonine-protein kinase RIO1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9B1_9STRA)

HSP 1 Score: 388 bits (997), Expect = 2.580e-124
Identity = 217/424 (51.18%), Postives = 274/424 (64.62%), Query Frame = 3
Query:  255 EGEMDGMESSLLREGGATKTGVGATGLKQMAAKMDTAPRHSHLVVN-------SISKAEKAGATRSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEGQEGARIAALVAEAQGEELTSEEQV-------------------------QEAVFMSSFIPRNLHEVEHIEREAKAIAGGETT-AHAIAISHMLKPDPGEEEAIVEAVQPEGE 1427
            E E   +E  LL EG     G G  G    +A    A   SH  VN        I+++E+    R  HTGRD+RAT+EQV+DPRTRL+L++LL+KGFL  I+GCLSTGKEANVYYA    G+ YA K++KTSI+VFKDRD+YVSGE+R+RHGYCRSNPRKMVK+WAEKEMRNLRRL AAGIP+P PV++K +VL+MDF+G  GWP+PRL+D+ L  RR+   Y  C+ +MR + H C+LVHGDLSEYNLL HEG++I IDVSQS+EHDHP+A DFLR DC NV  FF+R+G  V G RR ++FV   GL   QE  + A    +    E   EEQ                          +EAVFM S+IPR+LHE+ +   EA+ I  GE    +A A+  ML   P ++E    A + EGE
Sbjct:   88 EDEYADLEGLLLGEGSEAMLGGGTRGWGGASAAAAAARLESHRSVNLSQSVRNDITRSERTAEKRVTHTGRDERATTEQVLDPRTRLILWRLLSKGFLASIDGCLSTGKEANVYYAQDPAGKAYAIKVFKTSILVFKDRDRYVSGEFRFRHGYCRSNPRKMVKLWAEKEMRNLRRLAAAGIPAPRPVVLKGHVLVMDFVGTGGWPAPRLKDVQLGPRRLEEAYWSCLGYMRRLHHDCRLVHGDLSEYNLLYHEGQVIVIDVSQSVEHDHPQAWDFLRKDCLNVNAFFQRRGVRVAGTRRTFDFVVDGGLGTSQEEVKAALKSLK----ETVDEEQEGGPXXXXXXXXXXXXXXXXXXXXXQEEAVFMKSYIPRSLHELPNSFEEARRIEAGEREQVYAAAVREMLV--PAKQERRQAACESEGE 505          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: A0A7S1C556_9STRA (Serine/threonine-protein kinase RIO1 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C556_9STRA)

HSP 1 Score: 372 bits (956), Expect = 1.990e-120
Identity = 197/331 (59.52%), Postives = 246/331 (74.32%), Query Frame = 3
Query:  417 GATRSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEGQ-EGARIAALVAEAQGE--ELTSEEQVQEAVFMSSFIPRNLHEVEHIEREAKAIAGGETT-AHAIAISHMLKPDPGEEEA 1397
            GA  SRHTGRDDRAT+EQVMDPRTRL+LFKLLN GF+Q I GC+STGKEANVYYAV   G E A KI+KTSI+VFKDRD+YVSGE+R++ GY +SNPRKMV+VWAEKEMRNL+RL AA IP P+P+L+++NVL MDF+G++GWP+PRL+D +LS  ++S  Y Q V  MR MF   +LVH DLSEYN+L   G++I IDVSQS+E DHPRAMDFLRMDC+NVTDFF RK    M  R L++FV+   LP  + E A +A +   A+      T+E++V  AVFM S+IPR+L ++   ERE   +A GET  A   A++ ML    G  EA
Sbjct:   21 GARASRHTGRDDRATTEQVMDPRTRLILFKLLNSGFIQEINGCVSTGKEANVYYAVKPDGAELAIKIFKTSILVFKDRDRYVSGEHRFKTGYSKSNPRKMVRVWAEKEMRNLKRLHAADIPCPNPLLVRANVLAMDFVGRDGWPAPRLKDAALSSGQVSSAYSQVVDLMRRMFQVTRLVHADLSEYNMLWQRGRVIIIDVSQSVESDHPRAMDFLRMDCQNVTDFFARKKLATMTPRELFDFVTHLSLPTKEAEEAYLAEMSRRARDRPRNATAEDEVSHAVFMQSYIPRSLADIHDHEREGDKMAAGETDGAFYEALATMLPAASGGVEA 351          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: A0A6P8ZXP6_THRPL (Serine/threonine-protein kinase RIO1 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZXP6_THRPL)

HSP 1 Score: 370 bits (951), Expect = 4.010e-118
Identity = 182/315 (57.78%), Postives = 234/315 (74.29%), Query Frame = 3
Query:  375 SHLVVNSISKAEKAGATRSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEGQEGA---RIAALVAEAQGEELTSEEQVQEAVFMSSFIPRNLHEVEHIERE 1310
            +H     I    KA A R R   + DRAT+EQVMDPRTR++LFKLLN+G +  I GC+STGKEANVY+A G  G+  A KIYKTSI+VFKDRDKYVSGE+R+R+GYCRSNPRKMV+ WAEKEMRNL R+  A +P P P+L++ +VL+MDF+G EGW +P+L+D  LS  R   LY  CV  M TMF+KC+LVH DLSE+NLL HEG +  IDVSQS+EHDHPRA DFLR DC N+TDFF+++G   M ++ L++F++   + E    A   R++A  AE +G+ELT+EEQV+E VF + +IPR L EV H+ER+
Sbjct:  159 NHAANKLIENTRKADAGRIRTKDKQDRATAEQVMDPRTRMILFKLLNRGIVLEINGCISTGKEANVYHATGKDGKNLAIKIYKTSILVFKDRDKYVSGEFRFRNGYCRSNPRKMVRTWAEKEMRNLVRMHTANLPVPEPILLRGHVLVMDFIGHEGWAAPKLKDAELSNSRACKLYRDCVVMMWTMFNKCRLVHADLSEFNLLYHEGMVYVIDVSQSVEHDHPRAADFLRKDCSNITDFFKKQGVATMLVKELFDFITDPTVTEANMEAYLDRVSAQAAE-RGDELTAEEQVKEEVFKNVYIPRRLEEVAHVERD 472          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: A0A835YHG6_9STRA (Serine/threonine-protein kinase RIO1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHG6_9STRA)

HSP 1 Score: 369 bits (948), Expect = 2.920e-117
Identity = 188/310 (60.65%), Postives = 236/310 (76.13%), Query Frame = 3
Query:  477 DPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAV-GSGGQ----EYAAK------IYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEGQEGARIAALVAEAQGEELTSEEQVQEAVFMSSFIPRNLHEVEHIEREAKAIA-GGETTAHAIAISHML 1370
            DPRTRL+LFKLLN GF+ +I+GCLSTGKEANVYYAV GS G     E+A K      I+KTSI+VFKDRDKYVSGE+RYRHGYCRSNPRKMVKVWAEKEMRNLRRL AAGIPSP+PV++KSNVL+M+FLG+ GWP+PR        +RM  +Y+QC+THM TM+ +C+LVHGDLSEYN+L H+G+L  IDVSQSME DHP A+DFLRMDC+NV DFF+R+G  ++G   L++ +    L      ARI  L  +    E  ++E+V EAVFMSSFIPR+L+++++ E EA+ IA GG    +  A++ ML
Sbjct:  163 DPRTRLILFKLLNSGFISKIDGCLSTGKEANVYYAVAGSKGASITGEFAIKVHMLSNIFKTSILVFKDRDKYVSGEFRYRHGYCRSNPRKMVKVWAEKEMRNLRRLTAAGIPSPAPVMVKSNVLVMEFLGENGWPAPR--------QRMQEMYDQCITHMTTMYRECRLVHGDLSEYNMLYHQGRLYIIDVSQSMEQDHPHALDFLRMDCRNVNDFFKRQGADIVGTHDLFDLIRDTALAAEDVVARIKQLQVDHASRESGNKEEVDEAVFMSSFIPRSLYQLDNCEAEAQQIADGGREHVYTKAVAQML 464          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: A0A6J1S147_FRAOC (Serine/threonine-protein kinase RIO1 n=2 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1S147_FRAOC)

HSP 1 Score: 368 bits (945), Expect = 3.160e-117
Identity = 182/322 (56.52%), Postives = 237/322 (73.60%), Query Frame = 3
Query:  375 SHLVVNSISKAEKAGATRSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCLVMGMRRLYEFVSGDGLPEG---QEGARIAALVAEAQGEELTSEEQVQEAVFMSSFIPRNLHEVEHIEREAKAIAGG 1331
            +H     I  A+KA A R R   + DRAT+EQVMDPRTR++LFKLLN+G +  I GC+STGKEANVY+A G  G+  A KIYKTSI+VFKDRDKYVSGE+R+RHGYCRSNPRKMV+ WAEKEMRNL R+  A +  P P+L++ +VL+MDF+G EGW +P+L+D  LS  R   LY  CV  M  MF+KC LVH DLSE+NLL HEG +  IDVSQS+EHDHPRA+DFLR DC N+T+FF+++G   M ++ L++F++   + E    Q   R++A  AE +G++L++E+QVQE VF + +IPRNL EV HIER+ +    G
Sbjct:  154 NHATNKLIQNAKKADADRIRTKDKQDRATAEQVMDPRTRMILFKLLNRGVVTEINGCISTGKEANVYHATGKDGKNLAIKIYKTSILVFKDRDKYVSGEFRFRHGYCRSNPRKMVRTWAEKEMRNLVRMHTANLTVPEPILLRGHVLVMDFIGHEGWAAPKLKDAELSNSRACKLYRDCVVMMWAMFNKCHLVHADLSEFNLLYHEGMVYVIDVSQSVEHDHPRALDFLRKDCTNITEFFKKQGVATMLVKELFDFITDPTVTENNMEQYLDRVSAQAAE-RGDDLSAEQQVQEEVFKNVYIPRNLEEVVHIERDIRQAKEG 474          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: A0A7S2KXF4_9STRA (Serine/threonine-protein kinase RIO1 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXF4_9STRA)

HSP 1 Score: 362 bits (929), Expect = 2.110e-115
Identity = 208/372 (55.91%), Postives = 258/372 (69.35%), Query Frame = 3
Query:  375 SHLVVNSISKAEKAGAT-RSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYY--AVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCL-VMGMRRLYEFVS----GDGLPEGQEGARIAALVA-EAQGEELTSE-----------EQVQEAVFMSSFIPRNLHEVEHIE-REAKAIAGGETTAHAIAISHMLKPDPGEEEAIVEAVQPEGE 1427
            SH V N++ K +K  +T  ++HTGRDDRAT EQ +DPRTRL+LF+LL+ G+  +IEGCLSTGKEANVYY  + G+G  E A KIYKTSI+VFKDRDKYVSGE+R+R GYC+SNPRKMVKVWAEKEMRN +RL AAGIP P P L+KSNVLIM FLG+ GWPSPRLRD  LS +R+   Y Q V  MR MF +CKLVHGDLSEYNLL H  ++  IDVSQS+E DHP A+DFLR D  NV DFFR+ G L VM  R+L+EF++    GD  PE +  A    ++A +A GE L  E           E+V EAVFMS F+PR+L++V   +  + +     ET A+A+A         G EE I   ++ +GE
Sbjct:   82 SHKVNNNVQKMQKMESTVHAKHTGRDDRATVEQCLDPRTRLILFRLLSNGYFTKIEGCLSTGKEANVYYGRSGGNGENECAIKIYKTSILVFKDRDKYVSGEHRWRKGYCKSNPRKMVKVWAEKEMRNYKRLHAAGIPCPEPHLLKSNVLIMQFLGENGWPSPRLRDAGLSNKRIREAYVQTVIIMRRMFQRCKLVHGDLSEYNLLWHNNEVYVIDVSQSVESDHPSALDFLRKDVANVNDFFRKAGDLDVMSTRQLFEFITSIVFGD-TPEAESHALDEIMLAVQANGERLEQESEQIRREEQQQEKVDEAVFMSQFLPRSLNQVADYDIAQLQKGQAEETYANAVAAL------TGNEEVINTVIKQKGE 446          
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Match: A0A5D6Y4P1_9STRA (Serine/threonine-protein kinase RIO1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4P1_9STRA)

HSP 1 Score: 358 bits (920), Expect = 8.770e-115
Identity = 180/305 (59.02%), Postives = 235/305 (77.05%), Query Frame = 3
Query:  426 RSRHTGRDDRATSEQVMDPRTRLVLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFKDRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPVLIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKCKLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFFRRKGCL-VMGMRRLYEFVSGDGLPEGQEGARIAALVAEAQGEEL--TSEEQVQEAVFMSSFIPRNLHEVEHIEREAKAIAGG 1331
            R++HTGRDDRAT EQV+DPRTR++L+K+LN+G +  I GCLSTGKEANVY+A    G+E A K+YKTSI+VFKDR+KYVSGE+R+RHGY +SNPRKMVK+WAEKEMRNLRRL+ AGI +P+P++++S+VL+MDF+G+EG+P+P+L+D  LS  R    Y  CV  MRTM+ KCKLVHGDLSEYN+L ++ +L FIDVSQS+EH+HP A DFLR DC+NVTD+F + G L  M  + L++FV+   L +     R+  + A      +  T+E+QV EAVFMS+FIPR+L EV H ERE  A   G
Sbjct:   28 RTKHTGRDDRATQEQVLDPRTRMILYKMLNQGVVSEINGCLSTGKEANVYHARFPDGREGALKVYKTSILVFKDREKYVSGEFRFRHGYSKSNPRKMVKLWAEKEMRNLRRLRDAGIFAPNPIMLRSHVLLMDFIGREGYPAPKLKDAKLSETRYRECYLYCVKMMRTMYQKCKLVHGDLSEYNILYYQQQLYFIDVSQSVEHEHPSAADFLRKDCRNVTDYFTKYGGLNPMTTQELFDFVTDPALADADVDDRLDRMQAVIASRPVGRTNEQQVDEAVFMSTFIPRSLGEVLHSEREQLAYMEG 332          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_973.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL94_ECTSI5.910e-14562.03Non-specific serine/threonine protein kinase n=2 T... [more]
A0A6U0UH90_9STRA1.310e-12956.90Serine/threonine-protein kinase RIO1 n=1 Tax=Pingu... [more]
I2CQR8_NANGC1.060e-12651.19Serine/threonine-protein kinase RIO1 (Fragment) n=... [more]
W7T9B1_9STRA2.580e-12451.18Serine/threonine-protein kinase RIO1 n=2 Tax=Monod... [more]
A0A7S1C556_9STRA1.990e-12059.52Serine/threonine-protein kinase RIO1 (Fragment) n=... [more]
A0A6P8ZXP6_THRPL4.010e-11857.78Serine/threonine-protein kinase RIO1 n=1 Tax=Thrip... [more]
A0A835YHG6_9STRA2.920e-11760.65Serine/threonine-protein kinase RIO1 n=1 Tax=Tribo... [more]
A0A6J1S147_FRAOC3.160e-11756.52Serine/threonine-protein kinase RIO1 n=2 Tax=Frank... [more]
A0A7S2KXF4_9STRA2.110e-11555.91Serine/threonine-protein kinase RIO1 (Fragment) n=... [more]
A0A5D6Y4P1_9STRA8.770e-11559.02Serine/threonine-protein kinase RIO1 n=1 Tax=Pythi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_973contigC-australica_Contig_973:13748..17924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL94
Preferred nameRIOK1
PFAMsRIO1
Model size1711
Max annot lvl2759|Eukaryota
KEGG koko:K07178
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001932,GO:0001933,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008406,GO:0009791,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0014013,GO:0014015,GO:0016070,GO:0016072,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030490,GO:0030684,GO:0030688,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036093,GO:0036211,GO:0040026,GO:0040028,GO:0042127,GO:0042254,GO:0042274,GO:0042325,GO:0042326,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045595,GO:0045597,GO:0045935,GO:0045936,GO:0046483,GO:0046578,GO:0046579,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051056,GO:0051057,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0061062,GO:0061063,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1990234,GO:1990904,GO:2000026,GO:2000232,GO:2000234
Exons18
Evalue6.04e-146
EggNOG OGsCOG1718@1|root,KOG2270@2759|Eukaryota
Ec32 ortholog descriptionRIO-like kinase
Ec32 orthologEc-15_004790.1
EC2.7.11.1
Descriptionpositive regulation of rRNA processing
Cds size1665
COG categoryDT
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588840.6345344-CDS-C-australica_Contig_973:13747..138071682588840.6345344-CDS-C-australica_Contig_973:13747..13807Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 13748..13807 -
1682588840.6460311-CDS-C-australica_Contig_973:14039..141091682588840.6460311-CDS-C-australica_Contig_973:14039..14109Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 14040..14109 -
1682588840.6544209-CDS-C-australica_Contig_973:14280..144231682588840.6544209-CDS-C-australica_Contig_973:14280..14423Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 14281..14423 -
1682588840.6630943-CDS-C-australica_Contig_973:14515..146351682588840.6630943-CDS-C-australica_Contig_973:14515..14635Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 14516..14635 -
1682588840.6720757-CDS-C-australica_Contig_973:14752..148041682588840.6720757-CDS-C-australica_Contig_973:14752..14804Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 14753..14804 -
1682588840.6806417-CDS-C-australica_Contig_973:14909..149951682588840.6806417-CDS-C-australica_Contig_973:14909..14995Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 14910..14995 -
1682588840.689547-CDS-C-australica_Contig_973:15166..152321682588840.689547-CDS-C-australica_Contig_973:15166..15232Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 15167..15232 -
1682588840.7023714-CDS-C-australica_Contig_973:15401..154501682588840.7023714-CDS-C-australica_Contig_973:15401..15450Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 15402..15450 -
1682588840.7151515-CDS-C-australica_Contig_973:15605..156711682588840.7151515-CDS-C-australica_Contig_973:15605..15671Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 15606..15671 -
1682588840.7281685-CDS-C-australica_Contig_973:15876..159331682588840.7281685-CDS-C-australica_Contig_973:15876..15933Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 15877..15933 -
1682588840.7380793-CDS-C-australica_Contig_973:16089..161891682588840.7380793-CDS-C-australica_Contig_973:16089..16189Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 16090..16189 -
1682588840.7487297-CDS-C-australica_Contig_973:16424..165001682588840.7487297-CDS-C-australica_Contig_973:16424..16500Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 16425..16500 -
1682588840.7568548-CDS-C-australica_Contig_973:16754..168631682588840.7568548-CDS-C-australica_Contig_973:16754..16863Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 16755..16863 -
1682588840.7648542-CDS-C-australica_Contig_973:16964..171001682588840.7648542-CDS-C-australica_Contig_973:16964..17100Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 16965..17100 -
1682588840.772892-CDS-C-australica_Contig_973:17177..172691682588840.772892-CDS-C-australica_Contig_973:17177..17269Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 17178..17269 -
1682588840.7825496-CDS-C-australica_Contig_973:17343..174551682588840.7825496-CDS-C-australica_Contig_973:17343..17455Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 17344..17455 -
1682588840.7961862-CDS-C-australica_Contig_973:17535..176731682588840.7961862-CDS-C-australica_Contig_973:17535..17673Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 17536..17673 -
1682588840.8041117-CDS-C-australica_Contig_973:17747..178801682588840.8041117-CDS-C-australica_Contig_973:17747..17880Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 17748..17880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588840.8119946-UTR-C-australica_Contig_973:17880..179241682588840.8119946-UTR-C-australica_Contig_973:17880..17924Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 17881..17924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_973.7.1prot_C-australica_Contig_973.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_973 13748..17880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_973.7.1

>prot_C-australica_Contig_973.7.1 ID=prot_C-australica_Contig_973.7.1|Name=mRNA_C-australica_Contig_973.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=555bp
MVMDRSSTQVKPSRLDGVVPNQFDDEGVMPDEEPAEEPAVQRRQDLTSML
FDMAPRESVVVENESSESESEGEMDGMESSLLREGGATKTGVGATGLKQM
AAKMDTAPRHSHLVVNSISKAEKAGATRSRHTGRDDRATSEQVMDPRTRL
VLFKLLNKGFLQRIEGCLSTGKEANVYYAVGSGGQEYAAKIYKTSIMVFK
DRDKYVSGEYRYRHGYCRSNPRKMVKVWAEKEMRNLRRLQAAGIPSPSPV
LIKSNVLIMDFLGKEGWPSPRLRDISLSRRRMSLLYEQCVTHMRTMFHKC
KLVHGDLSEYNLLLHEGKLIFIDVSQSMEHDHPRAMDFLRMDCKNVTDFF
RRKGCLVMGMRRLYEFVSGDGLPEGQEGARIAALVAEAQGEELTSEEQVQ
EAVFMSSFIPRNLHEVEHIEREAKAIAGGETTAHAIAISHMLKPDPGEEE
AIVEAVQPEGEKNETGKLRAGSLGEGYENPGRGSNGSIDEGTSPEDEMGS
GSESDSDWEDERPRKPGNYSTMTPEERGAAKAAAKVARKLAKEDQKEKRK
TKLKK
back to top

mRNA from alignment at C-australica_Contig_973:13748..17924-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_973.7.1 ID=mRNA_C-australica_Contig_973.7.1|Name=mRNA_C-australica_Contig_973.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4177bp|location=Sequence derived from alignment at C-australica_Contig_973:13748..17924- (Chrysoparadoxa australica CS_1217)
GTTTTACCCTAGAGAGAAGGGTGGGAAGTCTCTCTCACGCCTGAATGGTG ATGGACCGCAGCAGCACCCAAGTTAAGCCCAGCAGGCTTGACGGAGTGGT GCCAAACCAGTTCGATGATGAGGGAGTCATGCCAGACGAGGAGCCGGCTG AGGAGCCGGCTGTGCAGCGGAGGCAAGGTAGCCATCCTCCCGACCTCTGC CTAGCCTCACTCTCACCCCCCTGGAGCTGACAGTCCCCCCTCTTGCCCCA GACCTCACCTCCATGCTGTTTGACATGGCCCCACGGGAGTCTGTTGTGGT GGAGAACGAGAGCTCTGAGAGTGAGAGCGAAGGCGAAATGGATGGCATGG AGTCTTCTTTGTTGAGGGAAGGGGGAGCCACAAAGACAGGTGAATGGGTT GTTTGCCTTGGATGGTCCCTTCTGGTTGTTTGCAGCACCGCTATAGCTCA ACCATGCTTATCGTATCAGGAGTTGGAGCCACAGGGCTCAAGCAAATGGC AGCCAAGATGGACACAGCCCCTAGGCATTCGCATTTGGTGGTCAACAGCA TAAGCAAGGCTGAAAAGGCAGGAGCGACAAGGTGAACTTGGTCTGACCCT GCTCTGCTAAACATTGGCTTGCTGGGCCTCACCTACACTCAACTAACTCG GATAGGTCCCGACACACCGGCCGTGATGACCGTGCCACCAGCGAGCAAGT GATGGACCCTCGTACCAGGCTGGTGTTGTTCAAACTTCTCAACAAGGGTA TGCACTCTGTAAAGCTCTATCCCCGAGCCACTTGGATGTTATGTAAGAGA CGCATCAAACTCTCGCTCCTGCAGGGTTCTTGCAGCGCATAGAGGGGTGC TTGAGTACGGGTAAGGAAGCCAATGTGTACTATGCAGTCGGCTCCGGAGG GCAAGAGTACGCTGCTAAGATTTACAAGACTAGCATCATGGTCTTCAAAG ATAGGGACAAGTAAAGTTCAGCAAGCCTCCCTCTCCATACACACACAAAG GGAGATACACCCACATACTGAATGTCATACCTGCTCTTGCATGCTTCCTC TTCTCCTTAAGGTACGTCAGTGGTGAGTATAGGTACCGCCATGGCTACTG CAGGAGCAACCCTCGCAAGATGGTCAAGGTCTGGGCCGAAAAAGAAATGA GAAATTTGAGGAGGCTCCAGGTGGGTGACCTAAGGGTTGATGCTCAACTA GAAAGTGCGTGGGTCATGTCATTATCTCACCTGAGTAGGGAGTTTTGTTG TGAACGCCTTCTGGTGCTGGACAGTGAGAGGTTAAGTGAGGTGTGAGATG AGAGAGAGTTGACACGGGGAAAGTTGAGTGCCAGAAGGAAAATGCCTGTG TTATCTATCTATAATTACACTGCTTCCCGTTCCTAGTTTGATTGTCTCTG CTCATCTCATCCACACACCCAAAGGCGGCAGGTATCCCATCGCCCAGTCC CGTATTGATCAAGAGCAATGTCCTTATTATGGACTTCCTGGGCAAGGAGG GTAAGCACACACCTCACCTTACTATCTATCGGCTTGTGTTATTTCAGACG GGCACCTACAGTTCAGATGCATGAAGTAACCCATGCTACAACTAGCACTA CACGCAATACTCCCTGTTAACTGGACCCTCATTTAATTTGTATCACCCCT TGCCCACTTTAACTCACTTGGCTCAGCACGTGCTGGCAGTCATTACATAC TCAGCAGCCTCAACAAACTCCACACATACTGCCAGGCTGGCCGTCACCAC GCCTGCGGGATATCTCACTGAGCCGACGAAGGATGTCACTGCTGTACGAG CAGTGCGTCACGCACATGAGGACCATGTTCCACAAGTAAGGAAGGGCTAG CACTGCTGCGCCACACGTAGCTGCACTCGACTGCCCCAAGTCTATGTGTG CCAGGGGCCAAGTGCCAGCCTCTCTCTCCCCATCAAATCATTTGCATGTC AGCTTGGGTACTGAAATGACTGATTGGTGCCAATGTTCCAGGTGTAAGCT GGTGCACGGCGATCTCAGTGAGTATAACCTGCTTCTTCATGAGGGGAAGT AAGTCAGAGCTGCCAATCAATATGTGACATAGTCCAGCCTACTTCAAGCT CCTCCCATCTCATGATGCCATAGCAAGATCACCTTGCACCATCCTAATGT CACTTGTGTTCCTGAAATTAAACACCCTGATTTGCCAGCCAGCCACCCAC CCTGCCAGCTGGTATCAACGGCTAAGCCTGGACCCGTTCATTACTGCACT CAGGTTAATTTTCATTGATGTGAGTCAGTCCATGGAGCATGACCATCCAC GTGCCATGGACTTTCTCAGGTCAGTGTTATCCCTCTCATGCCTTACCTAA CATTACCGCTTGTCACAGAGGCCTTGGGCCTTGTCTTTCCCATCTCGTGA AATATCTTCGGTGTACAGCAGCATGCTCATGTTTATGCTCAATGATACCA CTTCACCACCGCTGTTGCCTCTAGGATGGATTGCAAGAACGTCACAGACT TCTTTCGAAGAAAAGGCTGCTTGGTAACCACGGCCAGGCTCATTCATCCG TTGCCATTGCGTCCTATCCCACCCCAATACTGTTGCTTCTCACCTAACCT ACACCCTGGCCTGGTACCAATCATCCTAACGCAAGACTCAAGACGGCTGG CTGCACATATTCCCCATCTGACGTATTACCACCCACCTAAAGGTGATGGG TATGAGACGCCTCTATGAATTTGTCTCGGGGGATGGGTTGCCAGAAGGTC AAGAAGGGGTATGTACTATGTACTACATTGATTGTCCCCGATCTCCAGTA ATGTGGGTGGAATACAGAGTGGTTGAGGTGGTTGTGGTGGAAGTGTTGCT AGTGGTTCAAGAGTTATTATCATAGTGATAGTGGTCCTTGTCTGTGACTC ATCTTTTCTCAATATATTATATCAATCAGGCCAGAATAGCTGCGCTCGTA GCAGAGGCGCAAGGAGAGGAGCTGACTAGCGAAGAGCAAGTACAGGAAGC AGTCTTCATGAGCAGGTGAGTTGCTGGAGCACTCACTATTTGTGCTGGAT GCCACCCCTCTGCCTTCGTTTTACTTTGTTCTTTTTTTTTCCGCTTTGAC CAAGCTACCACTCCTCTCAGTTTTATCCCCAGGAACTTGCATGAAGTTGA ACATATTGAGCGAGAAGCTAAGGTGCAAAGTGCTTTCCTAAAATGACCTG ACCCATGAGCTTCCTTCCATGCCTCCCATCACCCTCTCTCCTTTCTCTGC TCCCTTTGCACCTCACTTCCGCATCTGCACCTCCATCAGGCCATAGCAGG GGGTGAGACGACAGCGCATGCCATTGCCATCAGCCATATGCTCAAGCCAG ACCCAGGGGAGGAAGAGGCGATTGTAGAAGCAGTGCAGCCTGAGGGAGAA AAGAATGAGGTGGGTCGAGTCGGTACGAAGCACTTAAGAAGTGTGGAAAT AGGCAGCTAATCCTCTTCTCTTCCACCGCCTTATTAAACTCTGACTCGCA GACGGGCAAGTTGAGAGCTGGTTCTCTCGGGGAAGGCTATGAAAACCCTG GCAGAGGTAGTAATGGCAGCATTGATGAAGGCACCAGCCCTGAAGATGAG ATGGGGTCTGGGTCCGAGTCTGACTCTGATTGGGAAGATGAGAGGTAACG TGGACAAGCTTTCACTGCCCTTCACGTACTCAATGAGCAACGCACCTGCT CTTCAAAACATAAAATTTTGACCTCCCTCTTTGAGATGCCTTTGCCAAAT GTGGCACTCCACAAATTGCTTTGCAAGTGTGCCCTGTTTCATATACAGCT TTGTTGTTGTTCCAGGCCTCGGAAGCCGGGCAACTACAGCACCATGACTC CCGAGGAGCGTGGAGCAGCTAAAGCGGCGGCAAAGGTACTGACCCCGCTG CAGAGATAAGAAGAGTTGTGCTTGATGAGATGAGATGAGATGAGATGGGA TATCTGGGTGGTGTGAGTGGGGTAGAGGTGGGCAGATATGGCAAGCACCT GCTAGATGCCACAAGGCGAGAGAGTTTTAGTGGGCAACAGTGAGAGAGTT TTAGTGGGCAACAGTGGGGACGTTGGGCCCATTGCTCAGTGATGGTGTTG CTCTGCTCTCAACCCAGGTGGCGCGAAAGCTTGCTAAGGAGGACCAGAAG GAGAAGCGGAAGACGAAGCTAAAAAAG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_973:13748..17924-

>mRNA_C-australica_Contig_973.7.1 ID=mRNA_C-australica_Contig_973.7.1|Name=mRNA_C-australica_Contig_973.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1665bp|location=Sequence derived from alignment at C-australica_Contig_973:13748..17924- (Chrysoparadoxa australica CS_1217)
ATGGTGATGGACCGCAGCAGCACCCAAGTTAAGCCCAGCAGGCTTGACGG
AGTGGTGCCAAACCAGTTCGATGATGAGGGAGTCATGCCAGACGAGGAGC
CGGCTGAGGAGCCGGCTGTGCAGCGGAGGCAAGACCTCACCTCCATGCTG
TTTGACATGGCCCCACGGGAGTCTGTTGTGGTGGAGAACGAGAGCTCTGA
GAGTGAGAGCGAAGGCGAAATGGATGGCATGGAGTCTTCTTTGTTGAGGG
AAGGGGGAGCCACAAAGACAGGAGTTGGAGCCACAGGGCTCAAGCAAATG
GCAGCCAAGATGGACACAGCCCCTAGGCATTCGCATTTGGTGGTCAACAG
CATAAGCAAGGCTGAAAAGGCAGGAGCGACAAGGTCCCGACACACCGGCC
GTGATGACCGTGCCACCAGCGAGCAAGTGATGGACCCTCGTACCAGGCTG
GTGTTGTTCAAACTTCTCAACAAGGGGTTCTTGCAGCGCATAGAGGGGTG
CTTGAGTACGGGTAAGGAAGCCAATGTGTACTATGCAGTCGGCTCCGGAG
GGCAAGAGTACGCTGCTAAGATTTACAAGACTAGCATCATGGTCTTCAAA
GATAGGGACAAGTACGTCAGTGGTGAGTATAGGTACCGCCATGGCTACTG
CAGGAGCAACCCTCGCAAGATGGTCAAGGTCTGGGCCGAAAAAGAAATGA
GAAATTTGAGGAGGCTCCAGGCGGCAGGTATCCCATCGCCCAGTCCCGTA
TTGATCAAGAGCAATGTCCTTATTATGGACTTCCTGGGCAAGGAGGGCTG
GCCGTCACCACGCCTGCGGGATATCTCACTGAGCCGACGAAGGATGTCAC
TGCTGTACGAGCAGTGCGTCACGCACATGAGGACCATGTTCCACAAGTGT
AAGCTGGTGCACGGCGATCTCAGTGAGTATAACCTGCTTCTTCATGAGGG
GAAGTTAATTTTCATTGATGTGAGTCAGTCCATGGAGCATGACCATCCAC
GTGCCATGGACTTTCTCAGGATGGATTGCAAGAACGTCACAGACTTCTTT
CGAAGAAAAGGCTGCTTGGTGATGGGTATGAGACGCCTCTATGAATTTGT
CTCGGGGGATGGGTTGCCAGAAGGTCAAGAAGGGGCCAGAATAGCTGCGC
TCGTAGCAGAGGCGCAAGGAGAGGAGCTGACTAGCGAAGAGCAAGTACAG
GAAGCAGTCTTCATGAGCAGTTTTATCCCCAGGAACTTGCATGAAGTTGA
ACATATTGAGCGAGAAGCTAAGGCCATAGCAGGGGGTGAGACGACAGCGC
ATGCCATTGCCATCAGCCATATGCTCAAGCCAGACCCAGGGGAGGAAGAG
GCGATTGTAGAAGCAGTGCAGCCTGAGGGAGAAAAGAATGAGACGGGCAA
GTTGAGAGCTGGTTCTCTCGGGGAAGGCTATGAAAACCCTGGCAGAGGTA
GTAATGGCAGCATTGATGAAGGCACCAGCCCTGAAGATGAGATGGGGTCT
GGGTCCGAGTCTGACTCTGATTGGGAAGATGAGAGGCCTCGGAAGCCGGG
CAACTACAGCACCATGACTCCCGAGGAGCGTGGAGCAGCTAAAGCGGCGG
CAAAGGTGGCGCGAAAGCTTGCTAAGGAGGACCAGAAGGAGAAGCGGAAG
ACGAAGCTAAAAAAG
back to top