mRNA_C-australica_Contig_973.3.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_973.3.1
Unique NamemRNA_C-australica_Contig_973.3.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_973.3.1 vs. uniprot
Match: A0A5D6XMF2_9STRA (ApaG domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMF2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.070e-8
Identity = 50/171 (29.24%), Postives = 84/171 (49.12%), Query Frame = 1 
Query:  121 ASPIMTGVELVDCIRKTYR--APLRDKTKAGHERCLDDALTAIRNLGESIMLRETSQIHEQGGIRLAATTQYAEHRLVSTPTHNGNLVEQMPMFFYRIRVENTGPKDAVYVLSYRSITYNGEVAHLS----KPPSALGGPPGLVSGDAFEY------QAQRPTAGGILHAM 597
            A  +  GV++   IR+++R  A L+   +   +  LD+A+ A++ L E ++L + S +    G+R+ AT++Y E       TH+ N  + +  F YRI + N    ++V +L  R  T+  E    +      P  +G  P L  G+AFEY       A R +  G LHA+
Sbjct:   80 ARDVAGGVDIAGIIRESFRENAGLQHPQEISDK--LDEAIIALQELSEQLLLAKCSSVTTTRGVRIEATSKYVE-------THS-NPEQNVFRFTYRITITNENAHESVQILG-RQYTFESEKGQRTALPRNSPGVVGATPVLAPGEAFEYASGVDIDAPRGSVSGCLHAL 239
[Close]
BLAST of mRNA_C-australica_Contig_973.3.1 vs. uniprot
Match: A0A2P4WYN6_9STRA (ApaG domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYN6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.290e-6
Identity = 47/163 (28.83%), Postives = 72/163 (44.17%), Query Frame = 1 
Query:  139 GVELVDCIRKTYRAPLRDKTKAGHERCLDDALTAIRNLGESIMLRETSQIHEQGGIRLAATTQYAEHRLVSTPTHNGNLVEQMPMFFYRIRVENTGPKDAVYVLSYRSITYNGE----VAHLSKPPSALGGPPGLVSGDAFEY------QAQRPTAGGILHAM 597
              +++  IR  +R  ++ K        LD+A+ A+  L E ++L   S +    GIR+ AT++Y E+   S P  N         F YR+ + N   + +V VL  R  T+  E    +A     P  +G  P L  G  FEY       A R +  G LHA+
Sbjct:   72 STDVMQSIRLAFRQNMQLKDAKVVSAKLDEAIEALSELSEQLLLARCSSVTVTDGIRIEATSKYLENH--SNPASNTY------RFTYRVTITNQNEECSVQVLG-RQYTFESEKGQRIALQRNSPGIVGATPVLAPGQTFEYASGVDIDAPRGSVVGCLHAV 225
[Close]
BLAST of mRNA_C-australica_Contig_973.3.1 vs. uniprot
Match: V9FHH2_PHYPR (ApaG domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9FHH2_PHYPR)

HSP 1 Score: 56.6 bits (135), Expect = 3.460e-5
Identity = 50/187 (26.74%), Postives = 81/187 (43.32%), Query Frame = 1 
Query:  112 YRPASPIMTGVELVDCIRKTYRAPLRDKTKAGHERCLDDALTAIRNLGESIMLRETSQIHEQGGIRLAATTQYAEHRLVSTPTHNGNLVEQMPMFFYRIRVENTGPKDAVYVLSYRSITYNGE----VAHLSKPPSALGGPPGLVSGDAFEY------QAQRPTAGGILHAMCVFTPVQRMGDELQG 642
            +R  SP    V++V  IR  +R  ++   +      LD+A+ A+  L + ++L   S +    GIR+ A+++Y +    S P  N         F YR+ + N     ++ +L  R  T+  E    +A     P  +G  P L  G  FEY       A R +  G LHA      V++ GD+  G
Sbjct:   77 FRMGSP---SVDIVQSIRVAFRQNMQISDQKAASAKLDEAIEALSELSDQLLLARCSSVTVTDGIRIEASSKYVQSH--SNPASNTY------RFTYRVTITNQNEGCSIQILG-RQYTFESEKGQRIALPRNSPGIVGATPLLSPGQTFEYASGVDIDAPRGSVTGCLHA------VRKTGDDDDG 245
[Close]
BLAST of mRNA_C-australica_Contig_973.3.1 vs. uniprot
Match: A0A2D4C7I9_PYTIN (ApaG domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7I9_PYTIN)

HSP 1 Score: 56.6 bits (135), Expect = 3.530e-5
Identity = 49/173 (28.32%), Postives = 73/173 (42.20%), Query Frame = 1 
Query:  145 ELVDCIRKTYRAPLRDKTKAGHERCLDDALTAIRNLGESIMLRETSQIHEQGGIRLAATTQYAEHRLVSTPTHNGNLVEQMPMFFYRIRVENTGPKDAVYVLSYRSITYNGE----VAHLSKPPSALGGPPGLVSGDAFEY------QAQRPTAGGILHAMCVFTPVQRMGDE 633
            ++ + IR +++A +           LDDA+ A+    E +ML E S I    GIR+ AT+Q+        PTH+ N  + +  + YR+ + N    D V +   R  T+  E     A     P  +G  P L  G  FEY       + R    G LH       V R GD+
Sbjct:   89 DVEEMIRXSFKAKMHLADSKEIASGLDDAIAALHEXSEQLMLAECSSITVTNGIRIEATSQFV-------PTHS-NPEQNLYRYTYRVTITNENEXDTVQITG-RQYTFESERGQRXALPRNSPGIVGNTPVLQPGQTFEYASGVDIDSPRGFVTGCLH-------VVRRGDD 245
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_973.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5D6XMF2_9STRA4.070e-829.24ApaG domain-containing protein n=1 Tax=Pythium bra... [more]
A0A2P4WYN6_9STRA9.290e-628.83ApaG domain-containing protein n=1 Tax=Phytophthor... [more]
V9FHH2_PHYPR3.460e-526.74ApaG domain-containing protein n=10 Tax=Phytophtho... [more]
A0A2D4C7I9_PYTIN3.530e-528.32ApaG domain-containing protein n=1 Tax=Pythium ins... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_973contigC-australica_Contig_973:3638..6691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI50253
PFAMsDUF525
Model size1679
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons16
Evalue7.35e-07
EggNOG OGsCOG2967@1|root,2RIVQ@2759|Eukaryota,3QBG6@4776|Peronosporales
DescriptionApaG domain
Cds size651
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588840.090555-UTR-C-australica_Contig_973:3637..37001682588840.090555-UTR-C-australica_Contig_973:3637..3700Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 3638..3700 +
1682588840.1012142-UTR-C-australica_Contig_973:3765..38341682588840.1012142-UTR-C-australica_Contig_973:3765..3834Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 3766..3834 +
1682588840.2057786-UTR-C-australica_Contig_973:5070..53041682588840.2057786-UTR-C-australica_Contig_973:5070..5304Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 5071..5304 +
1682588840.2140694-UTR-C-australica_Contig_973:5448..55411682588840.2140694-UTR-C-australica_Contig_973:5448..5541Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 5449..5541 +
1682588840.2245498-UTR-C-australica_Contig_973:5678..57791682588840.2245498-UTR-C-australica_Contig_973:5678..5779Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 5679..5779 +
1682588840.2368941-UTR-C-australica_Contig_973:5924..59821682588840.2368941-UTR-C-australica_Contig_973:5924..5982Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 5925..5982 +
1682588840.2459621-UTR-C-australica_Contig_973:6056..61451682588840.2459621-UTR-C-australica_Contig_973:6056..6145Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 6057..6145 +
1682588840.2538702-UTR-C-australica_Contig_973:6218..63401682588840.2538702-UTR-C-australica_Contig_973:6218..6340Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 6219..6340 +
1682588840.2675643-UTR-C-australica_Contig_973:6431..65311682588840.2675643-UTR-C-australica_Contig_973:6431..6531Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 6432..6531 +
1682588840.2770026-UTR-C-australica_Contig_973:6592..66911682588840.2770026-UTR-C-australica_Contig_973:6592..6691Chrysoparadoxa australica CS_1217UTRC-australica_Contig_973 6593..6691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588840.1102188-CDS-C-australica_Contig_973:3834..38411682588840.1102188-CDS-C-australica_Contig_973:3834..3841Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 3835..3841 +
1682588840.1199703-CDS-C-australica_Contig_973:3905..39791682588840.1199703-CDS-C-australica_Contig_973:3905..3979Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 3906..3979 +
1682588840.1299555-CDS-C-australica_Contig_973:4070..41851682588840.1299555-CDS-C-australica_Contig_973:4070..4185Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 4071..4185 +
1682588840.1495762-CDS-C-australica_Contig_973:4274..43561682588840.1495762-CDS-C-australica_Contig_973:4274..4356Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 4275..4356 +
1682588840.1622996-CDS-C-australica_Contig_973:4413..45171682588840.1622996-CDS-C-australica_Contig_973:4413..4517Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 4414..4517 +
1682588840.176286-CDS-C-australica_Contig_973:4629..47061682588840.176286-CDS-C-australica_Contig_973:4629..4706Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 4630..4706 +
1682588840.1850543-CDS-C-australica_Contig_973:4798..49651682588840.1850543-CDS-C-australica_Contig_973:4798..4965Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 4799..4965 +
1682588840.19533-CDS-C-australica_Contig_973:5045..50701682588840.19533-CDS-C-australica_Contig_973:5045..5070Chrysoparadoxa australica CS_1217CDSC-australica_Contig_973 5046..5070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_973.3.1prot_C-australica_Contig_973.3.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_973 3835..5070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_973.3.1

>prot_C-australica_Contig_973.3.1 ID=prot_C-australica_Contig_973.3.1|Name=mRNA_C-australica_Contig_973.3.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=217bp
MTGVELVDCIRKTYRAPLRDKTKAGHERCLDDALTAIRNLGESIMLRETS
QIHEQGGIRLAATTQYAEHRLVSTPTHNGNLVEQMPMFFYRIRVENTGPK
DAVYVLSYRSITYNGEVAHLSKPPSALGGPPGLVSGDAFEYQAQRPTAGG
ILHAMCVFTPVQRMGDELQGQGQGQGRDQEDKSQKKKKHEQQQLENDQIV
MNLSLPFNMPWSKSKP*
back to top

mRNA from alignment at C-australica_Contig_973:3638..6691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_973.3.1 ID=mRNA_C-australica_Contig_973.3.1|Name=mRNA_C-australica_Contig_973.3.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3054bp|location=Sequence derived from alignment at C-australica_Contig_973:3638..6691+ (Chrysoparadoxa australica CS_1217)
ACCTTCGTCCTTCAAAATTGCTTAGGTAACTCTGCGTTGCAAAGCTTTGA
CCACAGCAGCCAGGTGAGGAGAGAAGAGGAGATAAAATGAGCATGCTCGT
CACCTTTTACCTCTTCTTTCCCTCTTAGGACCTCTGGGGACGCTCGATTA
ACATCCTTCCCCCATCGGCCAGACCTTATAGACCCGCGAGCCCTATCATG
ACGGGTAAAGAAATCAAACAGACCATATAGACGTGCGAGCCCTATCATGA
CGATTGCTTCTCCCTCAGGTGTGGAGCTTGTCGATTGCATTAGAAAAACT
TACCGGGCACCTTTAAGAGATAAGACAAAGGCAGGCCATGAGGTATAGAG
AGAGAAGAGTGTAGCGGTCATTCCTTGCCTAGACCTTTTCTTCCCTTCTT
TTCACGTAACCTTCCTTCGCTCCTTTTCAAAAGCGCTGCCTGGATGATGC
TCTCACAGCAATCAGGAACTTAGGGGAAAGCATCATGCTACGGGAGACCA
GCCAGATCCATGAACAAGGGGGCATCAGATTAGCTGCTACCACCCAGTGT
GAGTGCGAACTAAAAGAGAGGGGAACAAAGGCTGGCCTCACTCACTTTTG
GCTGATGATCTCTTCATTGTTTTCATTCATTGCAAAGATGCAGAACATAG
ACTTGTGTCGACCCCGACACATAATGGGAACTTGGTTGAGCAGATGCCCA
TGTTCTTTTACCGAATTAGGTAAGCTTCTGGCTTGTAAGCCTTTTTGCTC
ATTTTTACAATGCTGCCGCCCTTCAGAGTGGAGAATACCGGCCCAAAGGA
CGCGGTCTATGTTCTGTCTTACAGATCCATTACTTACAATGGAGAGGTTG
CCCACCTCTCAAAGCCCCCATCAGCGCTCGGTAGGTCATAAACGAATGGG
AAGATACTCAGCTCCACTCTTTTGCACCACGCTGCCGTTGCTTGCTTGTT
GAAGACATCACCACCCATTGTTGTTGTTTTTTTTTTCCATAGGAGGCCCT
CCGGGTTTAGTCTCCGGGGATGCCTTTGAGTATCAAGCACAGAGGCCGAC
AGCAGGGGGGATCTTACACGTATTGTCAACTTCCCTCTTTCCCTTTCCTA
CGTCTTTTTCTTTCCCCAACTTCTCCTGCCCCTGCCTGGTGCTTCTGGTG
CTTCCTCTCAGGCTATGTGTGTCTTCACCCCAGTCCAGCGCATGGGCGAT
GAGTTACAGGGGCAAGGACAAGGGCAAGGACGGGACCAGGAAGACAAGTC
TCAAAAGAAGAAAAAACATGAGCAACAACAGCTAGAAAATGACCAAATTG
TCATGAACTTGAGTCTCCCTTTTAACATGTGAGTATCCTGATGCATAGCA
ACCCTGTCGTTGCCGTTGTTGTGACCTTGTGACCTCAAATAATTTAATCT
AATCTCAGGCCTTGGTCAAAGTCAAAGCCCTGATCAAGTCTAGAGATCTA
GAGGTCTAAAATAGAGGAAAGCCTTGTGATTGACTTTTTCTGGCGATGAC
CTTACTAGCTGCTCAATGCTCCCCTTTTGTCTCTCCCTTCTCCTCTTTCC
CCTCTCCCTTTAATCCTTCATCTTCCTCCATGACAGTGGCCTCAACTACT
CCTGTGTGCTCTAGTATCATAGTGGGACCCACACGCTCCTTCTCTTCCTT
GATGCAAAAATAGTAGTGCCGCCCTAGCAGGAGCAGAGCGAGTCAGATGA
GGGAGAGAATTACCAAATGAAGCAAGCCTGCAACATCCAATCTGGTTTAA
TTGCTGTTGGAGAAGGGAAGCTTTGGTCTAGTCTTAATAACATGTGTGCT
GAGGCTGTTAGCATATACCCTGTGTGGCAGTGCAAGCACGGCACTTGGTC
TTGGGTTCCTCTGGTGGCGGTGGATTAACCTTGCAGTTCTTTGCTAGGGA
CCCAGCAAGCTCACCTGATTTGGGATAGGGCAGTACACATAGACAGCATT
GAAGAGTGTGTACACAGTGAGATGGAGCAAAAGATGGAGCAAAGCTCAGG
CCATAAAGGCGGTATTGGACGTGGAAGGGTAGATAGATTAGTTACGTTCT
CACCCCAGCAATTGAGCGCATTTGGGTCAGCTCCTGATTGCTTTAGTAGG
TTGCACACCACATAGTGTCCACCGCGCGTTGCCTTGTATTAGGTAATGGA
GGGAGGGCAGCATGGTGAGTAAAGGCTGATGCAGAACACTTGACGGCAGG
AGGTGGAAGGTAATAGAAGTTGAGGCGGACTGGCCGGCAAAGACACGCCA
CACTCAGTCACAATCTTTGGGCTTTTACCTTATGGAGAGGCGTCTCTTTC
TCTCTGTCCAAAGCCCCTACGTCTGACCCACACCCTAGTAACAGGGCGGT
GACCTAGAGTGAGAGGAGGCGGGAGCAAGAAAATGTTAGGGAGCGGATGG
TGTGAGCTGTAAGGAGAAGCTTGTCACCTCTCTGTGCGCGCAGGCATAGT
GCAATGGGGTCTGCCCATTCACATCCAAGGCATTAGCGTTAGCACCGCGC
TGTCAGAAGCGAAGAATTGAGGTGCAGCAAAGCAAGATGATGTGCTGAGG
TTGTAAGGCGGAGCTCTCTCACCTCTAGCAGTGCCATGGCCGCCTCGAAA
TGCCCCGCTGAGGCAGCTATGTGGAGTGGCGTTCTCTCGTTGTAGTCCCT
GCTGTCTACCTTGCAGTCATGCTCCAGCAGCAGCTCGACCAGGTCAAAGT
CATCCTGAGGAAGGGGAAAAGGGAAAAGAGTGTACATATTGTTTTATGTT
GGTGGAACACTGCATCCAAGCCATGCCGTAGTGTACTCAACAAACCTTTT
CAGCTGCTGCATAGTGCAGTGGTCCCCACCGCCCACCACCTCTAGACTCT
ATACTGGCACCACGCTCCAGCAGGAGCTTTGCTGCCAGCACCTTGTGAAA
CCTACCGCAAGTGTAGTGACGTTATGGCAAGGGGTAACTTCTTCATGCAA
GTTAGTCCTTACCGGCACGCCTCTAACAGAGGAGAGCAGTGGAACTGTCC
TCCCTTTCCATCAATGTCGGTTCCGCTGTCCAGATACCTTGCAAGTACCT
CCAG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_973:3638..6691+

>mRNA_C-australica_Contig_973.3.1 ID=mRNA_C-australica_Contig_973.3.1|Name=mRNA_C-australica_Contig_973.3.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=651bp|location=Sequence derived from alignment at C-australica_Contig_973:3638..6691+ (Chrysoparadoxa australica CS_1217)
ATGACGGGTGTGGAGCTTGTCGATTGCATTAGAAAAACTTACCGGGCACC
TTTAAGAGATAAGACAAAGGCAGGCCATGAGCGCTGCCTGGATGATGCTC
TCACAGCAATCAGGAACTTAGGGGAAAGCATCATGCTACGGGAGACCAGC
CAGATCCATGAACAAGGGGGCATCAGATTAGCTGCTACCACCCAGTATGC
AGAACATAGACTTGTGTCGACCCCGACACATAATGGGAACTTGGTTGAGC
AGATGCCCATGTTCTTTTACCGAATTAGAGTGGAGAATACCGGCCCAAAG
GACGCGGTCTATGTTCTGTCTTACAGATCCATTACTTACAATGGAGAGGT
TGCCCACCTCTCAAAGCCCCCATCAGCGCTCGGAGGCCCTCCGGGTTTAG
TCTCCGGGGATGCCTTTGAGTATCAAGCACAGAGGCCGACAGCAGGGGGG
ATCTTACACGCTATGTGTGTCTTCACCCCAGTCCAGCGCATGGGCGATGA
GTTACAGGGGCAAGGACAAGGGCAAGGACGGGACCAGGAAGACAAGTCTC
AAAAGAAGAAAAAACATGAGCAACAACAGCTAGAAAATGACCAAATTGTC
ATGAACTTGAGTCTCCCTTTTAACATGCCTTGGTCAAAGTCAAAGCCCTG
A
back to top