mRNA_C-australica_Contig_972.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_972.4.1
Unique NamemRNA_C-australica_Contig_972.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_972.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_972contigC-australica_Contig_972:4546..8612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2160
Hectar predicted targeting categoryother localisation
Exons12
Cds size1425
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588839.0425453-UTR-C-australica_Contig_972:4545..45681682588839.0425453-UTR-C-australica_Contig_972:4545..4568Chrysoparadoxa australica CS_1217UTRC-australica_Contig_972 4546..4568 +
1682588839.194194-UTR-C-australica_Contig_972:7900..86121682588839.194194-UTR-C-australica_Contig_972:7900..8612Chrysoparadoxa australica CS_1217UTRC-australica_Contig_972 7901..8612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588839.0506089-CDS-C-australica_Contig_972:4568..46211682588839.0506089-CDS-C-australica_Contig_972:4568..4621Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 4569..4621 +
1682588839.064593-CDS-C-australica_Contig_972:4716..48481682588839.064593-CDS-C-australica_Contig_972:4716..4848Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 4717..4848 +
1682588839.0751827-CDS-C-australica_Contig_972:4912..50781682588839.0751827-CDS-C-australica_Contig_972:4912..5078Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 4913..5078 +
1682588839.0841093-CDS-C-australica_Contig_972:5226..53721682588839.0841093-CDS-C-australica_Contig_972:5226..5372Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 5227..5372 +
1682588839.0936484-CDS-C-australica_Contig_972:5558..56151682588839.0936484-CDS-C-australica_Contig_972:5558..5615Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 5559..5615 +
1682588839.103074-CDS-C-australica_Contig_972:5903..59961682588839.103074-CDS-C-australica_Contig_972:5903..5996Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 5904..5996 +
1682588839.1130586-CDS-C-australica_Contig_972:6188..63571682588839.1130586-CDS-C-australica_Contig_972:6188..6357Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 6189..6357 +
1682588839.131516-CDS-C-australica_Contig_972:6642..67741682588839.131516-CDS-C-australica_Contig_972:6642..6774Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 6643..6774 +
1682588839.1441455-CDS-C-australica_Contig_972:6848..69361682588839.1441455-CDS-C-australica_Contig_972:6848..6936Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 6849..6936 +
1682588839.1576843-CDS-C-australica_Contig_972:7208..73301682588839.1576843-CDS-C-australica_Contig_972:7208..7330Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 7209..7330 +
1682588839.1672454-CDS-C-australica_Contig_972:7511..76631682588839.1672454-CDS-C-australica_Contig_972:7511..7663Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 7512..7663 +
1682588839.1836822-CDS-C-australica_Contig_972:7785..79001682588839.1836822-CDS-C-australica_Contig_972:7785..7900Chrysoparadoxa australica CS_1217CDSC-australica_Contig_972 7786..7900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_972.4.1prot_C-australica_Contig_972.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_972 4569..7900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_972.4.1

>prot_C-australica_Contig_972.4.1 ID=prot_C-australica_Contig_972.4.1|Name=mRNA_C-australica_Contig_972.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=475bp
MVVPATPITYWSRESHQKYDSTPSYGDVGSRFAKAAATLKEFSIDVTGVL
RDDGERQYSPSRHPSPSPTPISRKGISGNKQVQHNRVIDFTSNDVPLATG
GTAATPSSHPTTTELSKKLECLLEENLAYSKSLEEAKAATRAATARLKDL
EQQLAGMRSIFGEILRRTRAENSDLLHFQVNADIQSRQGLKPLQLLDHFQ
GTAFDYLEMLVNSASREGAATATDDRKETGEDVSLKHWERRGEMHVALLE
ELHTTREQRLRARQTSGVLKQQVGKLKEQLNSKTLTLRQMKCIAQRRVAD
IEKLALKQATYIAYLQDERQSAFDTVWGQKEYVRTLERKVLSLAKGVNER
RGAVVPRERGGHSPTSKVAQPQSCGGCGTCESCWDKVSFEERRKALMGPH
HYEKERPRKSKLSDGYRRQQKVAAKDTCSDWTAALLRHYMTSDGSTPLVP
PKCDAGEPPHTPKPQRAPPNQLVS*
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mRNA from alignment at C-australica_Contig_972:4546..8612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_972.4.1 ID=mRNA_C-australica_Contig_972.4.1|Name=mRNA_C-australica_Contig_972.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4067bp|location=Sequence derived from alignment at C-australica_Contig_972:4546..8612+ (Chrysoparadoxa australica CS_1217)
CTTCAAACCCCCTCCACCCTCACATGGTGGTGCCGGCCACCCCCATCACA
TATTGGAGCAGAGAGTCCCACCAGAAGTGCTACTTAGCCTGCCCTTTTCG
CCTGATCTCTGCGCACCAGGCCAGGCGTGACTTAACCTCTCCCCTTCCTC
TCTTTCTGGCACACACGTCAGGTACGATAGCACGCCTTCATATGGTGATG
TGGGCTCCCGGTTCGCCAAAGCAGCAGCCACTCTAAAAGAATTCAGCATT
GATGTTACTGGAGTGCTCCGCGATGATGGAGAGCGGCAGTACTCGCCCAG
CAGGTGATGAAGCCAAGCCTTTCCTATAGGCTGGCGAACACTCACACTAC
TTCTCCATGTCACATAGGCACCCGAGCCCAAGTCCCACTCCGATCTCTCG
GAAAGGGATAAGCGGCAATAAGCAAGTCCAGCACAACAGGGTTATTGATT
TCACCTCAAATGATGTCCCCCTAGCCACTGGAGGGACTGCTGCTACACCC
TCAAGCCATCCCACGACAACTGAGCTCAGTAAGGTAAGCTGGACCCGAGA
GAACATCTGTCACTGTACAGCTCCCCGACCTGCCCTGCTGTCTACTTAAT
AACCACTACTCGCCTCTCGCCATTGACACTCCCTCCACTCCCTTACTTTT
CTGCTTCTCTCCACCTCCCCTGCTCTAACAGAAGCTTGAATGTCTGCTAG
AAGAGAACCTCGCTTACAGCAAATCATTAGAGGAGGCCAAGGCTGCAACC
AGAGCAGCCACTGCTAGGCTTAAGGACTTGGAGCAACAGCTCGCTGGCAT
GAGGAGCATATTCGGAGAGATACTAAGGTCGGTCCAACACCCCAGCAGCC
CATACTTCCCAGCAGTTACCTTCACTCCATGCAGATAAGGCAGTGGTGTG
TTAAGCCTCTTATACTTGAGCGGCTCAAGTCTTGTCACACATAGCATACT
TCCTTCATGGATTTCCTCTCTTGACACGGACATCTGCACGCAACTTGTTG
ACCTCACCAACAGGAGGACTCGGGCAGAGAACTCTGACCTCCTCCACTTC
CAAGTCAACGCAGACATCCAGTAAGTAGTACTGCCTTGCCTCTGAGATGC
TGTTGAGTTACAGTTGAGTTAGAGTAATACCCTTACTTGGGCCTACAAGC
CTGACTACTGCTTGGAGTGACATCGGCTGCTGCATTTGCAGCTTCCTCCT
GTTGTGGAGTACCGGGATAACAGCCCTAGTTCTTAGAGCAAGCTGCATGC
ATCTACTGTCAACTCTCATATAATAGTCGTTCGTTCTATTGGCAGCTTCC
ATGCTCTGCTGTAGCCATGTGTGAGAATTAACGGAAGTCAACGCTGTTTG
AACCCTAGATCAAGGCAAGGGCTGAAGCCACTGCAACTATTGGATCATTT
TCAAGGGACTGCCTTTGACTACCTGGAAATGCTTGTGAACTCTGCCAGCA
GGTGAGTTACTGAGTGAGTGAGTGCATGAGAGTGGAGTATAGACCCACGT
GAAGAACCTTCTTCCTCAAGTCATTTGTTAAAGTGATAAGGGTAGCCGAG
GCCAAGCTCTCTCTTTGGGTGGATCCCTGAGTATGGGAGTGGTAGCTGCA
TCTCTCATGACTGTCTGTATTATGACCATTCAATACCGTGCAGGGAAGGA
GCTGCTACTGCTACTGATGATAGGAAGGAAACAGGGGAGGATGTTTCATT
GAAGCACTGGGAGAGGAGAGGTGAGATGCATGTGGCGTTGCTCGAGGAGC
TGCACACCACCAGGGAGCAGAGGTTGAGGGCCAGACAAACCAGTGGAGTA
CTCAAGCAGCAGGTAATGTGTCACTCAGAGTCTAGTGCAACGAGAGTACT
GATGCAAAGGGCAAAGGGCTAGAGGCTAAGCATGATGTGAGATGCGGCTG
GGAGAGTGAGCAAGCCTGCTGTCTCTTGTCTCTTGCTGACCTTCCTTCTC
AGCAGCACTCCATGTTAGTAGGTTATGGAAGTGCTTGAGTGGTACAAGTG
AGTGAGCTTATTTCATAGCCTTCATTGAGATGATTAATGTGGAGATTAGA
AGTTATAGGGCCATGACTCGCAGTCTAATGATTGACCACCTCTACAGGTT
GGAAAGCTCAAAGAGCAGCTGAATAGCAAGACATTGACACTACGCCAGAT
GAAATGCATTGCGCAAAGAAGGGTGGCTGACATTGAGAAGCTTGCGCTGA
AGCAGGCTACTTATATTGCCTACTTACAAGTAAGTGAACTGACCTTAGAC
TGACCATGAAGATGAGCATGATGAGCATAAACATAATCAACATAAACCTG
CAGGACGAGAGGCAGAGCGCCTTTGACACGGTATGGGGGCAGAAAGAATA
CGTCAGAACGCTGGAGCGGAAAGTCCTGTCACTGGCAAAGGGTGGGTAAT
GATGCTCAAAAGTGATCGAGAGTGAGGAGCTGGGTGTAGGCATCGGAGCT
GAGCTGTGGTCAGGGATGTGTAAGCACGGGGGGCTCTCTCTCTCATCAAG
AAAATTGTGTCCTGATGAATGCACTGGGTGAAGCATGAACGCCAATGTAA
TTAATTAGCCAGCGGTCAATTGGTGGCTTGTGTGCGCCTAAATAGCCCAA
TCAAACCAGTTCACTGACCTTCTCTACTTCTTTTTCTTCTTCTCTCCTGT
ATCCTGAGTGCAGGTGTGAATGAGAGGAGGGGGGCAGTAGTGCCAAGGGA
ACGAGGGGGGCATTCTCCCACATCAAAAGTGGCCCAACCTCAATCTTGTG
GGGGATGCGGGACGTGTGAGAGCTGCTGGGATAAGGTGAGGAGAAAGGGA
AAGAAAGGCAGCAAAAGTTGCAAGCCGTGTGACGTTCAGCGTGACTTAGA
GCATAGTTTGAGGGATGACAGTGTGCATGTCTTTGTTGCCTGCTGAGGCT
GACTTGGCATATATGTACCTCCAGCAGTCCTAGATTGGCTTCCCTTTTGA
CGTTTTAGCACCGCAGGTATCTTTCGAGGAGCGCAGAAAAGCATTGATGG
GACCTCACCACTATGAGAAGGAAAGGCCCAGAAAGAGTAAGTTAAGCGAT
GGGTATCGAAGGCAGCAGAAGGTTGCTGCTAAGGACACCTGCAGTGACTG
GACCGCTGCATTGCTGAGGTGAGAAGCATGTGTGTTGTGGTACATGCCAT
GATGAAGGTCTATGCCTTGATGCCTTATTGCTTCCTCCTAGCTGTTTCCG
CCAGTCACGCCAACTTGGCTTCTTCCTTGCTCCATGCCAGGCATTACATG
ACCAGCGATGGCTCTACACCGCTGGTGCCTCCAAAGTGTGATGCGGGAGA
GCCACCACATACGCCAAAACCGCAGAGAGCCCCCCCCAACCAGCTGGTCA
GTTAGCTCTGCCTAGCTCTGCTGTTATGCAGAGGTGGAGATAGTCTAAGG
CTATGGACTATGGGAATGTAAAAGTAGTTTGACTACTAGGTTGCCGCGGT
TGGTTGTATACATTATGTAGCTGGGAGTGAAGTGATGTGAGTGAAGGCAT
TAGCCGTGCCAGTGTCCCTGCTTCTTAGGCTTATGAACGCGGACGTTTGT
GCTTTGTGTGTCAACTGTGTATGCTTTCATCAAAAGCTTCATGAGAAGCA
TTGCGCCTTCAATGTAAGCCTGCAACAATGTGTGCCGGGCCCTGGGCCTT
GCTGTTCCTCCCTTGAGAGAGCTCCCCCTTCCCCCAACAAAAACCCTAGG
AAATAGCTTAGGCAGTCTCTATCTGTGACCACCGAGCTTGCAGCGAGCAG
CTACCAAGCAGGAGGCAAATGCTAGCAACAGCGCTGCAGCATCCTATCGC
AGCACAGCATCACTGCAAGTCAATGGTTCTCTCTGCACTCACTGCGGTCA
GCATCGCAGCCAGCTTGTCCTTACGCTTGATCTGATCCATGAGCTCCTAT
ACATCACAGAGAGAAGAGAAGAAACCATCATGTCAGGCTGAAGCTGGGTC
AGGTTGGAAGTTTAGAGCCTTCTCTGCTCAAATATAGAGGAGAGACTTGA
ACTCCAAACGTACAACTTGACCGAGGGTCTGGATTAAATGGCCTCTAAAT
TCCACCTCTTTTCCTGC
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Coding sequence (CDS) from alignment at C-australica_Contig_972:4546..8612+

>mRNA_C-australica_Contig_972.4.1 ID=mRNA_C-australica_Contig_972.4.1|Name=mRNA_C-australica_Contig_972.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1425bp|location=Sequence derived from alignment at C-australica_Contig_972:4546..8612+ (Chrysoparadoxa australica CS_1217)
ATGGTGGTGCCGGCCACCCCCATCACATATTGGAGCAGAGAGTCCCACCA
GAAGTACGATAGCACGCCTTCATATGGTGATGTGGGCTCCCGGTTCGCCA
AAGCAGCAGCCACTCTAAAAGAATTCAGCATTGATGTTACTGGAGTGCTC
CGCGATGATGGAGAGCGGCAGTACTCGCCCAGCAGGCACCCGAGCCCAAG
TCCCACTCCGATCTCTCGGAAAGGGATAAGCGGCAATAAGCAAGTCCAGC
ACAACAGGGTTATTGATTTCACCTCAAATGATGTCCCCCTAGCCACTGGA
GGGACTGCTGCTACACCCTCAAGCCATCCCACGACAACTGAGCTCAGTAA
GAAGCTTGAATGTCTGCTAGAAGAGAACCTCGCTTACAGCAAATCATTAG
AGGAGGCCAAGGCTGCAACCAGAGCAGCCACTGCTAGGCTTAAGGACTTG
GAGCAACAGCTCGCTGGCATGAGGAGCATATTCGGAGAGATACTAAGGAG
GACTCGGGCAGAGAACTCTGACCTCCTCCACTTCCAAGTCAACGCAGACA
TCCAATCAAGGCAAGGGCTGAAGCCACTGCAACTATTGGATCATTTTCAA
GGGACTGCCTTTGACTACCTGGAAATGCTTGTGAACTCTGCCAGCAGGGA
AGGAGCTGCTACTGCTACTGATGATAGGAAGGAAACAGGGGAGGATGTTT
CATTGAAGCACTGGGAGAGGAGAGGTGAGATGCATGTGGCGTTGCTCGAG
GAGCTGCACACCACCAGGGAGCAGAGGTTGAGGGCCAGACAAACCAGTGG
AGTACTCAAGCAGCAGGTTGGAAAGCTCAAAGAGCAGCTGAATAGCAAGA
CATTGACACTACGCCAGATGAAATGCATTGCGCAAAGAAGGGTGGCTGAC
ATTGAGAAGCTTGCGCTGAAGCAGGCTACTTATATTGCCTACTTACAAGA
CGAGAGGCAGAGCGCCTTTGACACGGTATGGGGGCAGAAAGAATACGTCA
GAACGCTGGAGCGGAAAGTCCTGTCACTGGCAAAGGGTGTGAATGAGAGG
AGGGGGGCAGTAGTGCCAAGGGAACGAGGGGGGCATTCTCCCACATCAAA
AGTGGCCCAACCTCAATCTTGTGGGGGATGCGGGACGTGTGAGAGCTGCT
GGGATAAGGTATCTTTCGAGGAGCGCAGAAAAGCATTGATGGGACCTCAC
CACTATGAGAAGGAAAGGCCCAGAAAGAGTAAGTTAAGCGATGGGTATCG
AAGGCAGCAGAAGGTTGCTGCTAAGGACACCTGCAGTGACTGGACCGCTG
CATTGCTGAGGCATTACATGACCAGCGATGGCTCTACACCGCTGGTGCCT
CCAAAGTGTGATGCGGGAGAGCCACCACATACGCCAAAACCGCAGAGAGC
CCCCCCCAACCAGCTGGTCAGTTAG
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