mRNA_C-australica_Contig_970.3.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_970.3.2
Unique NamemRNA_C-australica_Contig_970.3.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: D8LEB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 6.620e-26
Identity = 87/252 (34.52%), Postives = 122/252 (48.41%), Query Frame = 2
Query:  482 NEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWAANEAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGW-MPLFAIYVMRRCIS--LSNEAGTMSDAAVT-SCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFCRIIEQQCTCIAALG---GEDKSLD 1216
            N G +L T +LSFL+  R NQ+Y RW EGR LWG M   C+  T Q   W  +  +  R +  ++ F   VKQ LR + +   E++ ++   EV   N      MP +   VMR+CI   L++        AV    D  +  L    +DM R+RN+P P  +  +L +    YLL++P+   D L +  V   L+   L  GL   A  LEDPFG D + L L+ F   I  QC     LG   G D +LD
Sbjct:   65 NTGRSLQT-ILSFLIVFRTNQSYNRWWEGRILWGKMHWSCVELTQQAAVWIDDTQLARRIMNISVTFAYVVKQILRREQLFADEMEGVIDAAEVELINNLPPLVMPYYCTEVMRQCIKKGLADSPQAFGTQAVARGIDVPVSQLSVQFADMERVRNTPQPDCFRVMLHMFTLLYLLVLPVISYDTLGYFVVLEMLVTAYLMLGLQIAADHLEDPFGRDESDLQLDRFVAEIAAQCRAAFYLGSKNGADLTLD 315          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: UPI001681FA77 (hypothetical protein n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001681FA77)

HSP 1 Score: 105 bits (263), Expect = 1.040e-21
Identity = 68/222 (30.63%), Postives = 110/222 (49.55%), Query Frame = 2
Query:  509 LLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWAANEAVRTR-------ALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFC 1153
            +L  LL  R N AYER+ EGR+LWGT+ +    F  Q+  W A EA   +        LR  +AF VA K  LR Q+M   E++ ++ P +  K  +     PL   + +   +   NE G +++  + +   ++  +V+ +    RI  +P+P+ YA  L  L   Y L++P  + D ++W T P+  LV  +  G+      +E+PFG D   L L+  C
Sbjct:   59 ILGLLLVFRTNTAYERFWEGRKLWGTLVNTVRNFARQI--WVAIEAKEPQDTQEKIATLRLLVAFAVATKLHLRQQAMNS-EIEALISPKQYLKLKSMNH-PPLEVAFWIGDYLQKQNERGCINNYQLAAMHKLLDNMVDVLGGCERILKTPIPLAYAIHLKQLLLIYCLILPFEVVDNVQWWTGPIVALVSFMLFGVEEIGIEIENPFGHDFNDLPLDTIC 276          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: UPI00034C48CB (hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI00034C48CB)

HSP 1 Score: 105 bits (261), Expect = 1.860e-21
Identity = 73/222 (32.88%), Postives = 106/222 (47.75%), Query Frame = 2
Query:  509 LLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWAA-------NEAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFC 1153
            +L  LL  R N AYER+ EGRRLWGT+T        Q+  W A       + A + RALR  +AF VA K  LR + +   EL+ ++ P +  K        PL   + +   +   ++ G +    +TS   ++  +V  +S   RI  +P+P+ YA  L  L   Y L +P  M  KL W T PV  LV  +  G+      +E+PFG D   L L+  C
Sbjct:   57 ILGLLLVFRTNTAYERFWEGRRLWGTITISVRNLARQI--WIAVDEKEPLDAANKVRALRLLVAFAVATKLHLRQEPLNS-ELEALMAPEQYVKIKDMNN-PPLEVAFWIGDYLQKQHDRGCVDSYQLTSMYKLLDEMVGALSGCERILRTPMPLAYAIHLKQLLLIYCLFLPFDMVSKLNWWTAPVVALVSFMLFGIEEIGVEIENPFGHDPNDLPLDTLC 274          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: UPI001688F315 (hypothetical protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI001688F315)

HSP 1 Score: 102 bits (255), Expect = 1.530e-20
Identity = 74/262 (28.24%), Postives = 123/262 (46.95%), Query Frame = 2
Query:  389 LKTMMPYVLIPVWAAVLIAFDVRLGVDVMFPNEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWAA-------NEAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFC 1153
            + ++ P VL+ V  +VLIA    LG  V +P  G  + + +L  LL  R N AYER+ EGR+LWG + +        M  W A       + A + + L+  +AF +A K  LR Q   + EL ++L P +  K  +     P+   + +   + L +  G +S   +T+    +  ++  +    RI  +P+P+ Y+  L  L   Y   +P  + D+LEW T  +  L+     G+      +E+PFG D   L L+  C
Sbjct:   29 IPSIWPRVLLCVGFSVLIAGLHELGWRVSWPVLGTLVPSIVLGLLLVFRTNTAYERFWEGRKLWGQLVNTSRNLARHM--WVAIQETSPEDRASKVQTLKLLVAFAIATKLHLRCQPPNQAELSKLLTPEQFDKLQSMNN-PPIEVAFWIADYLQLQHGYGKLSIYEMTAMTGRLDDMINALGGCERILKTPIPLAYSIHLKQLLLLYCFALPFQVVDQLEWWTALIVGLISFAVFGIEEIGIEIENPFGTDANDLPLDAIC 287          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: A0A2P8W8X8_9CYAN (Uncharacterized protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2P8W8X8_9CYAN)

HSP 1 Score: 99.4 bits (246), Expect = 2.090e-19
Identity = 82/283 (28.98%), Postives = 127/283 (44.88%), Query Frame = 2
Query:  389 LKTMMPYVLIPVWAAVLIAFDVRLGVDVMFPNEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWAANEAV-------RTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFCRIIEQQCT-CIAALGGEDKSL 1213
            +  +MP VL+    +V I      G  V  P  G  + + +L  LL  R N +YER+ EGR+LWG++ +       QM  W A  A        +  A+R   AF VA+K  LR +     EL  +L   +  K        PL   + +   +      GT++   +T C   + GLV+ +    RI  +PVP+ Y+  L  L   Y L +P  M D + W T  +  L+     G+      +E+PFG D   L L+  CR ++Q     I+ + G ++SL
Sbjct:   29 IPAVMPRVLLCAVFSVGILLLYARGWPVASPILGSLVPSLVLGLLLVFRTNTSYERFWEGRKLWGSVVNLTRNLARQM--WVAIAATEPSDREAKLAAVRLLPAFAVAMKLHLRGEPPD-AELSSLLSADQFAKLRQMNN-PPLEIAFWVADYLQTQQAQGTLNPYQLTYCLETLDGLVDALGGCERILKTPVPVAYSIHLKQLLMLYCLALPFQMVDSVGWGTPLLVGLISFAVFGIEEIGIEIENPFGHDPNDLPLDAICRTMQQNIEDLISLVPGSERSL 307          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: A0A1A3P258_MYCAS (Uncharacterized protein n=1 Tax=Mycobacterium asiaticum TaxID=1790 RepID=A0A1A3P258_MYCAS)

HSP 1 Score: 98.2 bits (243), Expect = 4.060e-19
Identity = 78/258 (30.23%), Postives = 118/258 (45.74%), Query Frame = 2
Query:  413 LIPVWAAVLIAFDVRLGVDVMFPNEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWA-ANEAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYV-------MRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFCRII 1162
            L   W A ++AF   +   V  P +   L    LS LL  R + +Y+R+ EGR+LWG + ++        + +  A+  V  R  R+T AFP AV  +LR          E+L P ++T+    E    + A +        M  C+  + E G +SD  +TS D  I+ LV+ +    RIR +P+P  YA  L      Y   +P AM +   W T+   L++   + G+      +EDPFG D   L LE  C  I
Sbjct:   30 LCVAWGAAVVAFHNYVA-PVSMPIQLHTLMGLALSLLLVFRTSSSYDRFWEGRKLWGGIVNETRNLVRSASTYLKADPEVVARLTRWTAAFPWAVMHSLR--------ATEVLGP-QITELPLAEAQEAIDAQHPALAVAGSMSGCLREARERGLISDIMLTSMDQNIQLLVDYLGSCERIRKTPMPFAYAVHLRRALVLYCFTLPFAMVETFGWTTIVDVLVIAYTFFGIEEIGVEIEDPFGYDANDLPLEDICEAI 277          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: UPI001A068554 (Uncharacterized protein n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI001A068554)

HSP 1 Score: 98.6 bits (244), Expect = 4.510e-19
Identity = 79/287 (27.53%), Postives = 129/287 (44.95%), Query Frame = 2
Query:  362 RSKHREAFTLK-----TMMPYVLIPVWAAVLIAFDVRLGVDVMFPNEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQM-----NNWAANEAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFCRIIEQQCTCIAAL 1192
            RS  R  F+L+      ++P   +  + A+++    R G  V  P  G  + T +L  LL  R N +YER+ EGR+LWG + +       QM      +  A++  +  A+R   AF +A+K  LR +    +EL  ++   +  K  T     PL   + +   +      G ++   +T C   +  LV+ +    RI  +P+P+ Y+  L  L   Y L +P  M D L W T  V  L+     G+      +E+PFG D   L L+  CR +EQ    + +L
Sbjct:   16 RSWFRVLFSLQGSVIPAVLPRTALCAFFALMVYGLYRWGWPVSSPILGSLVPTLVLGLLLVFRTNTSYERYWEGRKLWGGVVNLTRNLARQMWVAIQEHQPADQTAKVAAIRLLPAFAIAMKLHLRGEPPN-QELAHLVSAEQFAKLQTVNN-PPLEIAFWLADYLQTQEAGGKLNPYQLTYCLEALDDLVDTLGGCERILKTPMPLAYSIHLKQLVMLYCLALPFQMVDSLGWGTPFVVGLISFAVFGIEEIGIEIENPFGHDPNDLPLDAICRTMEQNTEDLISL 300          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: A0A3L7PG57_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PG57_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 7.000e-19
Identity = 65/233 (27.90%), Postives = 104/233 (44.64%), Query Frame = 2
Query:  473 MFPNEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWAANEA-VRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFCRIIEQ 1168
            +FP    AL    L  LL  R N +Y+R+ EGR+LWG + +       Q + W A +       +R+TIAF  A    LR +       +E+  P   T+     G +PL  +  +   +  S     +    + S D  ++ L +      RI ++P+P  Y   L      Y   +P A+ +K    T+PV L++  +  G+      +EDPFG+D+  L LE  C  IE+
Sbjct:   53 VFPETAHALIGASLGLLLVFRTNSSYDRFWEGRKLWGAIVNTTRNLARQASTWLAKDPDAANETIRWTIAFSFATMSRLRGKKDLGPMEREL--PAAKTQAALQSGHVPLATLRNISAIVLESRNRSLIDSHQLQSMDQSVQLLADHCGGCERIHSTPMPFAYTVHLRRALMIYCFTLPFALVEKFGLITIPVTLVIAYVLFGIEEIGVEIEDPFGDDVNDLPLEKICLGIEE 283          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: A0A6B3MGL0_9CYAN (Uncharacterized protein n=4 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6B3MGL0_9CYAN)

HSP 1 Score: 97.4 bits (241), Expect = 1.090e-18
Identity = 73/279 (26.16%), Postives = 129/279 (46.24%), Query Frame = 2
Query:  347 ILRKWRSKHREAFTLKTMMPYVLIPVWAAVLIAFDVRLGVDVMFPNEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQM-----NNWAANEAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFCRIIEQ 1168
            +  +W+S       +  ++P V++      LI+    LG+ + +P E   + T +L  LL  R N AYER+ EGR+LWGT+ +       Q+      N   +   +   +R  +AF VA K  LR++ +   EL+ ++ P    K           A ++    +   +E   ++   +T+   ++  +V+ +    RI  +P+P+ YA  L  L   Y L++P  +  + EW T PV  L+     G+      +E+PFG D   L L+  CR +E+
Sbjct:   20 VALRWQSS-----VIPVVLPRVILCSLFGGLISLLYHLGISISWPIESSIVPTLVLGLLLVFRTNTAYERFWEGRKLWGTLVNTVRNLARQIWVAIAENRPEDRKAKLETMRLLVAFAVATKLHLRSEPLN-HELEVLVQPDCYDKLKIMNHPALEIAFWI-GDYLQDQHERHCLNTHQLTAMLKLLDTMVDVLGGCERIVKTPIPLAYAIHLKQLLLIYCLVLPFQIVSEFEWWTTPVVGLMSFTLLGVEEIGIEIENPFGRDPNDLPLDAICRTMER 291          
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Match: A0A2P8VEB2_9CYAN (Uncharacterized protein n=1 Tax=filamentous cyanobacterium CCT1 TaxID=2107702 RepID=A0A2P8VEB2_9CYAN)

HSP 1 Score: 97.4 bits (241), Expect = 1.180e-18
Identity = 73/261 (27.97%), Postives = 125/261 (47.89%), Query Frame = 2
Query:  389 LKTMMPYVLIPVWAAVLIAFDVRLGVDVMFPNEGLALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQM-----NNWAANEAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGWMPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNSPVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNNASALEDPFGEDLTQLNLELFCR 1156
            L  ++P V++ +  A LI      G +V  P  G  + + +L  LL  R N AYER+ EGR+LWG++ +       QM        AA++  +  AL+  +AF +AVK  LR+Q +   E+  +L P ++ K  +     PL   + +   +   +  G ++   +T+   ++  ++E +    RI  +P+P+ Y+  L  L   Y L +P  M  +L W T  +  L+     G+      +E+PFG D   L L+  CR
Sbjct:   45 LVAVLPRVVVALAFASLITALYAWGFEVSLPILGSLVPSIVLGLLLVFRTNTAYERFWEGRKLWGSLVNTVRNLARQMWVTITETSAADQKAKIEALKLLVAFAIAVKLHLRSQPLD-AEIATLLPPEQMGKLQSMNH-PPLEIAFWIADYLQDQHNQGHLNTYQLTAMMNLLDLMIEVLGGCERILKTPIPLAYSIHLKQLILIYCLALPFQMVAELGWMTPLIVGLISFTIFGIEEIGIEIENPFGHDANDLPLDEICR 303          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_970.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB5_ECTSI6.620e-2634.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001681FA771.040e-2130.63hypothetical protein n=2 Tax=unclassified Microcol... [more]
UPI00034C48CB1.860e-2132.88hypothetical protein n=1 Tax=Oscillatoria sp. PCC ... [more]
UPI001688F3151.530e-2028.24hypothetical protein n=1 Tax=Pseudanabaena sp. FAC... [more]
A0A2P8W8X8_9CYAN2.090e-1928.98Uncharacterized protein n=3 Tax=Cyanobacteria TaxI... [more]
A0A1A3P258_MYCAS4.060e-1930.23Uncharacterized protein n=1 Tax=Mycobacterium asia... [more]
UPI001A0685544.510e-1927.53Uncharacterized protein n=1 Tax=Leptolyngbyaceae c... [more]
A0A3L7PG57_9BACT7.000e-1927.90Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A6B3MGL0_9CYAN1.090e-1826.16Uncharacterized protein n=4 Tax=unclassified Sympl... [more]
A0A2P8VEB2_9CYAN1.180e-1827.97Uncharacterized protein n=1 Tax=filamentous cyanob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_970contigC-australica_Contig_970:2199..4852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEB5
PFAMsBestrophin
Model size1539
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons12
Evalue2.25e-27
EggNOG OGsCOG3781@1|root,2RXRZ@2759|Eukaryota
DescriptionBestrophin, RFP-TM, chloride channel
Cds size1209
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588838.0398285-UTR-C-australica_Contig_970:2198..23381682588838.0398285-UTR-C-australica_Contig_970:2198..2338Chrysoparadoxa australica CS_1217UTRC-australica_Contig_970 2199..2338 -
1682588838.1583452-UTR-C-australica_Contig_970:4541..45641682588838.1583452-UTR-C-australica_Contig_970:4541..4564Chrysoparadoxa australica CS_1217UTRC-australica_Contig_970 4542..4564 -
1682588838.1689525-UTR-C-australica_Contig_970:4685..48521682588838.1689525-UTR-C-australica_Contig_970:4685..4852Chrysoparadoxa australica CS_1217UTRC-australica_Contig_970 4686..4852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588838.0512278-CDS-C-australica_Contig_970:2338..25461682588838.0512278-CDS-C-australica_Contig_970:2338..2546Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 2339..2546 -
1682588838.0623024-CDS-C-australica_Contig_970:2696..27811682588838.0623024-CDS-C-australica_Contig_970:2696..2781Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 2697..2781 -
1682588838.070442-CDS-C-australica_Contig_970:2855..29521682588838.070442-CDS-C-australica_Contig_970:2855..2952Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 2856..2952 -
1682588838.0793812-CDS-C-australica_Contig_970:3067..30951682588838.0793812-CDS-C-australica_Contig_970:3067..3095Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 3068..3095 -
1682588838.0891004-CDS-C-australica_Contig_970:3191..32881682588838.0891004-CDS-C-australica_Contig_970:3191..3288Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 3192..3288 -
1682588838.0985992-CDS-C-australica_Contig_970:3438..35131682588838.0985992-CDS-C-australica_Contig_970:3438..3513Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 3439..3513 -
1682588838.1083858-CDS-C-australica_Contig_970:3611..36601682588838.1083858-CDS-C-australica_Contig_970:3611..3660Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 3612..3660 -
1682588838.1180458-CDS-C-australica_Contig_970:3740..39951682588838.1180458-CDS-C-australica_Contig_970:3740..3995Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 3741..3995 -
1682588838.1278126-CDS-C-australica_Contig_970:4056..41051682588838.1278126-CDS-C-australica_Contig_970:4056..4105Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 4057..4105 -
1682588838.1379404-CDS-C-australica_Contig_970:4197..43491682588838.1379404-CDS-C-australica_Contig_970:4197..4349Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 4198..4349 -
1682588838.1482415-CDS-C-australica_Contig_970:4427..45411682588838.1482415-CDS-C-australica_Contig_970:4427..4541Chrysoparadoxa australica CS_1217CDSC-australica_Contig_970 4428..4541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_970.3.2prot_C-australica_Contig_970.3.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_970 2339..4541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_970.3.2

>prot_C-australica_Contig_970.3.2 ID=prot_C-australica_Contig_970.3.2|Name=mRNA_C-australica_Contig_970.3.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=403bp
MMHRSRSYGSLESHGSSLSLKAKYHKVGRPLVHDSCQQGRDFDHRRSSFA
KQILRKWRSKHREAFTLKTMMPYVLIPVWAAVLIAFDVRLGVDVMFPNEG
LALFTGLLSFLLALRCNQAYERWNEGRRLWGTMTHQCICFTNQMNNWAAN
EAVRTRALRFTIAFPVAVKQTLRNQSMKKRELKEILYPGEVTKFNTYEGW
MPLFAIYVMRRCISLSNEAGTMSDAAVTSCDAVIRGLVEGMSDMIRIRNS
PVPIVYASLLSLLKWTYLLLMPMAMADKLEWATVPVALLVGILYNGLSNN
ASALEDPFGEDLTQLNLELFCRIIEQQCTCIAALGGEDKSLDEDDPRDAF
SYNTPDIEGIGEPDGNDEREAAKRPSWVLGMDDEEDSIMTQALLRQSSHL
TR*
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mRNA from alignment at C-australica_Contig_970:2199..4852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_970.3.2 ID=mRNA_C-australica_Contig_970.3.2|Name=mRNA_C-australica_Contig_970.3.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2654bp|location=Sequence derived from alignment at C-australica_Contig_970:2199..4852- (Chrysoparadoxa australica CS_1217)
CTTAGGCCCCCGAACCTACGCACGCAAATTAGCCCTGTGGGCGGGGTAGG GGGGCTTAAGCTAGAGGTGCCTTGTTTTCCTCAGGGCATCCTTTGCTTGC GCTCGTCATCGCACCTTCTGTTCTCAGAACAATTGAGCTGAATCCGGGGC AGATTGGATCACCCGAGGTAGGTAGGCCCTATCATCGGCTGCTGCTGGGC GCACCGGCCTGCCCTAGGCACAGCAGCGAATTTCTCGCGTTGCATATCAC GTTAAGTGCTGTTGCTCAACCTCGCTGTCCCCTGCCAGGAGAGTTCTCTC CATAGTGTGGGATGATGCACAGGTCACGTAGCTACGGGAGCTTAGAGAGC CATGGCTCTAGCCTCTCTCTCAAAGCAAAGTACCACAAAGTTGGACGCCC ACTTGTTCACGACTCGTGCCAACAGGTGAGCGAGTCAGCCATGGCCATTA AGTAACCTAATGATAGCCACTCACTCACCTCTCACTCTCACCTATCCAAA AAGGGTAGGGACTTTGACCACAGGCGCTCCTCCTTCGCAAAGCAAATCCT TCGGAAGTGGAGAAGCAAGCACCGTGAGGCCTTTACGCTTAAGACCATGA TGCCTTATGTATTGATACCTGTGTGGGCGGCTGTACTCATTGCCTTTGAC GTCAGGTGAGATCATCCCTGTTCTCTTAGACTGTAAGTTTGCAATATGTG CATTGACTACATAAGCCGCTAACCAAGCAACTAACTCATCAAAACAGGCT TGGTGTTGATGTCATGTTTCCAAATGAAGGGTTGGCACTGTTCACGGTTA GACACCACCGCCTTTTATTTTATTTTTTTTGGTCCTGACAGTATTGATTG TCCTCAGGGACTCCTAAGCTTTCTGCTGGCACTCAGATGCAATCAAGCAT ATGAGAGATGGAACGAAGGGCGTCGGCTGTGGGGTACAATGACACATCAA TGCATCTGCTTTACTAATCAAATGAACAACTGGGCAGCAAATGAAGCAGT CCGCACCCGAGCGCTGCGCTTCACCATCGCTTTCCCTGTTGCGGTCAAGC AAACATTGCGCAATCAGTCCATGAAGAAGCGGGAGCTAAAGGAGATACTG TACCCGGGGGAGGTGCTTACTACCCTAATTATCCAACATCCCTTGGGCCA TTCTCTAACCCTAACAGCACTTCTTTTGCTCCCCGTCATCAGGTGACAAA ATTCAATACATATGAAGGCTGGATGCCACTGTTTGCCATATGTAAGAGAG CACATGGCTGCTGTACTGCTGATCCTAAAAACTCTGCTAACCTGAGGGGC TTTGGCGCATTTCATCTCCCAATTTTCTGCACCTGCCAGATGTGATGCGC CGCTGCATTAGTCTCTCTAATGAGGCTGGAACAATGAGTGATGCAGCAGT GACTTCCTGCGATGGTAGGATCTTAACCCCAACAATATTCTTGGTTGTTC TCATTCATCACCATGTCGCTCTCACTCATTTCCGTGTCGCTCTCACTCAT CACCACGCATGTTGCTCTCACTCATCTTTTCTCATGCTCCTTTTTGTCCT CTGTTGTCACCCAGCTGTTATTAGGGGGCTGGTGGAGGGAATGTCAGATA TGATAAGAATCAGGAACTCTCCTGTGCCTATAGTCTATGCCTCTCTCCTC TCCTTGCTCAAGTAAGTTGGTTCACCCTACCCCTGACTGACTGATAACTG TCAAACTCGCTTGGTTTGAATTTAATCTTTTCCCCAATATTTCATATATA TATATAGGTGGACGTACTTGCTCCTGATGCCAATGGTAAGCATGGCATAT AAACACCTGCCAGCATGAGTTGCAGTATAGCATGTGTTGCAGTATCTGTT GCAGTAACTGCCCCACTCCTTACAACCCTAAAACTTGCTATGGATCCTAG GCAATGGCTGATAAGCTAGAGTGGGCAACTGTGCCTGTCGCACTATTGGT GGGAATACTTTACAATGGACTATCCAATAATGCCAGTGCATTAGAAGGTA ACAGGCTCTGATGTGGTATCGATCAAGACGTTCTTGCACTTACATGCCAG CTTCAATTTCACTCTCTTTAGATCCATTTGGAGAGGATCTTACCCAGCTG AACTTGGAGCTATTCTGTCGAATAATTGAACAGCAATGCACGTGTATTGC CGCATTGTAAGTGCACCAGAACTCTGTCTTCCCTGACTCATTCGTGCCTT GCCCAAGCTTACAGTGTGTTGCAGTTGTGTTTGGTGCTGTATTTAGCCTC AACTTGATAACCGAGTCACTCTAACTCTCTACCATCTTTTGTTATGTTTA CTTCAGAGGTGGGGAGGATAAATCATTGGATGAGGATGATCCAAGAGACG CATTTAGTTATAATACACCTGATATCGAGGGAATTGGCGAGCCTGATGGT AATGATGAGAGGGAGGCAGCCAAAAGGCCATCATGGGTACTGGGAATGGA CGATGAAGAGGATTCAATTATGACTCAGGCCCTTCTGAGACAATCTTCCC ATCTCACCCGCTGAGGTTTGTTTAGCTGGGGATGAGGCGTGTTTAGTTGA TGCTGGCTGCTGAGGATGAATACTCTTAAATCATTTGATGGATGCAAAGG TTACATTGGTCATAAGCTGCCATGGTGCTAAATAGTAATTGATGCTTGAC AGGG
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Coding sequence (CDS) from alignment at C-australica_Contig_970:2199..4852-

>mRNA_C-australica_Contig_970.3.2 ID=mRNA_C-australica_Contig_970.3.2|Name=mRNA_C-australica_Contig_970.3.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1209bp|location=Sequence derived from alignment at C-australica_Contig_970:2199..4852- (Chrysoparadoxa australica CS_1217)
ATGATGCACAGGTCACGTAGCTACGGGAGCTTAGAGAGCCATGGCTCTAG
CCTCTCTCTCAAAGCAAAGTACCACAAAGTTGGACGCCCACTTGTTCACG
ACTCGTGCCAACAGGGTAGGGACTTTGACCACAGGCGCTCCTCCTTCGCA
AAGCAAATCCTTCGGAAGTGGAGAAGCAAGCACCGTGAGGCCTTTACGCT
TAAGACCATGATGCCTTATGTATTGATACCTGTGTGGGCGGCTGTACTCA
TTGCCTTTGACGTCAGGCTTGGTGTTGATGTCATGTTTCCAAATGAAGGG
TTGGCACTGTTCACGGGACTCCTAAGCTTTCTGCTGGCACTCAGATGCAA
TCAAGCATATGAGAGATGGAACGAAGGGCGTCGGCTGTGGGGTACAATGA
CACATCAATGCATCTGCTTTACTAATCAAATGAACAACTGGGCAGCAAAT
GAAGCAGTCCGCACCCGAGCGCTGCGCTTCACCATCGCTTTCCCTGTTGC
GGTCAAGCAAACATTGCGCAATCAGTCCATGAAGAAGCGGGAGCTAAAGG
AGATACTGTACCCGGGGGAGGTGACAAAATTCAATACATATGAAGGCTGG
ATGCCACTGTTTGCCATATATGTGATGCGCCGCTGCATTAGTCTCTCTAA
TGAGGCTGGAACAATGAGTGATGCAGCAGTGACTTCCTGCGATGCTGTTA
TTAGGGGGCTGGTGGAGGGAATGTCAGATATGATAAGAATCAGGAACTCT
CCTGTGCCTATAGTCTATGCCTCTCTCCTCTCCTTGCTCAAGTGGACGTA
CTTGCTCCTGATGCCAATGGCAATGGCTGATAAGCTAGAGTGGGCAACTG
TGCCTGTCGCACTATTGGTGGGAATACTTTACAATGGACTATCCAATAAT
GCCAGTGCATTAGAAGATCCATTTGGAGAGGATCTTACCCAGCTGAACTT
GGAGCTATTCTGTCGAATAATTGAACAGCAATGCACGTGTATTGCCGCAT
TAGGTGGGGAGGATAAATCATTGGATGAGGATGATCCAAGAGACGCATTT
AGTTATAATACACCTGATATCGAGGGAATTGGCGAGCCTGATGGTAATGA
TGAGAGGGAGGCAGCCAAAAGGCCATCATGGGTACTGGGAATGGACGATG
AAGAGGATTCAATTATGACTCAGGCCCTTCTGAGACAATCTTCCCATCTC
ACCCGCTGA
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