mRNA_C-australica_Contig_97.8.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_97.8.1
Unique NamemRNA_C-australica_Contig_97.8.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_97.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_97contigC-australica_Contig_97:36450..37226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008872061.1
PFAMsSec39
Model size390
Max annot lvl2759|Eukaryota
KEGG koko:K20473
Hectar predicted targeting categoryother localisation
GOsGO:0000956,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
Exons3
Evalue3.85e-06
EggNOG OGsKOG1797@1|root,KOG1797@2759|Eukaryota
Descriptionsequence
Cds size390
COG categoryI
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588835.0780005-CDS-C-australica_Contig_97:36449..365691682588835.0780005-CDS-C-australica_Contig_97:36449..36569Chrysoparadoxa australica CS_1217CDSC-australica_Contig_97 36450..36569 -
1682588835.088349-CDS-C-australica_Contig_97:36787..370071682588835.088349-CDS-C-australica_Contig_97:36787..37007Chrysoparadoxa australica CS_1217CDSC-australica_Contig_97 36788..37007 -
1682588835.0962288-CDS-C-australica_Contig_97:37176..372261682588835.0962288-CDS-C-australica_Contig_97:37176..37226Chrysoparadoxa australica CS_1217CDSC-australica_Contig_97 37177..37226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_97.8.1prot_C-australica_Contig_97.8.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_97 36450..37226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_97.8.1

>prot_C-australica_Contig_97.8.1 ID=prot_C-australica_Contig_97.8.1|Name=mRNA_C-australica_Contig_97.8.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=130bp
GDSEEAVRALLALGLQRCQPGSERRAELERLQATVDTYAFIAHCEGWQAW
QDSVIGEVAAPDEWQISLTEMRSLEWVDVAKSLAQRGRIKAVTILFMNCP
GATFPNRLTLLNELPETIDPRNYSHLLPW*
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mRNA from alignment at C-australica_Contig_97:36450..37226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_97.8.1 ID=mRNA_C-australica_Contig_97.8.1|Name=mRNA_C-australica_Contig_97.8.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=777bp|location=Sequence derived from alignment at C-australica_Contig_97:36450..37226- (Chrysoparadoxa australica CS_1217)
GGGGATAGCGAAGAGGCAGTCAGGGCGCTGCTTGCCTTAGGGCTGCAGAG
GTAGGTGCTGCTAATGGCTCTCGAAGTACCAGTCGAAGTACCAGTAGTAG
TAATAGGACTGGCGGTAGTCAGCTCTGGATATGTGAGAGACATGGCCTCA
GCATTTTCCTCACGGTCTGGCTGCATGCTCTCACACATCCATGGTGAACG
CTCCCACACGTCCTGTCAGATGCCAGCCTGGGTCCGAGCGAAGGGCGGAG
CTTGAGAGGCTGCAGGCCACCGTTGACACGTACGCCTTCATCGCTCACTG
TGAGGGCTGGCAAGCCTGGCAGGACAGTGTGATAGGAGAAGTGGCTGCAC
CAGACGAGTGGCAGATCAGCTTGACCGAGATGAGGAGCTTGGAGTGGGTA
GACGTGGCCAAGTCGCTTGCGCAGAGAGGCCGAATAAAGGTGAGGGAATT
GATAAGCACGCTTTATCTCTTGCCTCTATACTGCTTGCCTCTTTCACTCT
GAACTGATATATTATTCTCCATATAGAGTAGCTTGTGAAGTCACCCTGCG
CCTAACTTAGCCAGCCACTTTGGCACATTGCCATGGTTTGAACTGGCCTG
ACCGGCATGCCTTGCTCTCGCTCTCCTTCATCTCTGCTGGGCGCATAACC
CCACCAGGCGGTGACCATTCTGTTCATGAACTGTCCCGGTGCCACATTCC
CAAACCGTCTTACGCTACTAAATGAGCTGCCCGAGACGATTGATCCAAGG
AATTACAGCCATCTGCTCCCATGGTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_97:36450..37226-

>mRNA_C-australica_Contig_97.8.1 ID=mRNA_C-australica_Contig_97.8.1|Name=mRNA_C-australica_Contig_97.8.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=390bp|location=Sequence derived from alignment at C-australica_Contig_97:36450..37226- (Chrysoparadoxa australica CS_1217)
GGGGATAGCGAAGAGGCAGTCAGGGCGCTGCTTGCCTTAGGGCTGCAGAG
ATGCCAGCCTGGGTCCGAGCGAAGGGCGGAGCTTGAGAGGCTGCAGGCCA
CCGTTGACACGTACGCCTTCATCGCTCACTGTGAGGGCTGGCAAGCCTGG
CAGGACAGTGTGATAGGAGAAGTGGCTGCACCAGACGAGTGGCAGATCAG
CTTGACCGAGATGAGGAGCTTGGAGTGGGTAGACGTGGCCAAGTCGCTTG
CGCAGAGAGGCCGAATAAAGGCGGTGACCATTCTGTTCATGAACTGTCCC
GGTGCCACATTCCCAAACCGTCTTACGCTACTAAATGAGCTGCCCGAGAC
GATTGATCCAAGGAATTACAGCCATCTGCTCCCATGGTAA
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