mRNA_C-australica_Contig_969.6.2 (mRNA) Chrysoparadoxa australica CS_1217
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Overview
Homology
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: UPI00201F51DF (neurogenic locus notch homolog protein 1-like isoform X1 n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F51DF) HSP 1 Score: 129 bits (324), Expect = 8.510e-28 Identity = 74/172 (43.02%), Postives = 94/172 (54.65%), Query Frame = 2
Query: 2027 VTC-SNINGCSPGVCNTGVCQDDALVGYT---CNCPG-GYSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNCAEG--TCVNGSCKDLG---TTYECFCSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYEGSGAECID 2512
+TC + +NG S G CQ T C+C GY GD CEND++EC GTHNC +A+C NTDG +TC+CK G GDG CT +C E C+N D+ T C C TG+ G C+ + DEC GTHNCH A CT+T+GSF +G G +C D
Sbjct: 32 LTCWAVLNGVSGSCSVDGDCQHSGTCDTTNKICDCTNTGYDGDTCENDIDECTDGTHNCHANADCTNTDGSFTCKCKDGHAGDGVKCT---DCTENGNECLNDGTCDIPSGETAGTCLCKTGYSGRICEDDIDECTDGTHNCHANADCTNTDGSFXXXXXXXXDGDGVKCTD 200
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: A0A8J9WCT8_BRALA (FBN1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9WCT8_BRALA) HSP 1 Score: 130 bits (327), Expect = 6.720e-27 Identity = 71/150 (47.33%), Postives = 90/150 (60.00%), Query Frame = 2
Query: 2066 CNTGVCQDDALVGYTCNCPG-GYSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNC-AEGTCVNGSCKDLGTTYECF-CSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYEGSGAEC 2506
CN C + G CNC G GY+G C+ND++EC G HNC A CNNT G Y CEC G+ G+G TCTA+ C TC +G + C C +G++ +C N +ECA+ T NCH A+CTDT+GSFTCTC +GY GSG C
Sbjct: 373 CNR-YCPHGSPNGPICNCAGTGYNGTCCDNDIDECSTGVHNCHQHATCNNTVGSYRCECNSGYAGNGRTCTAL--CLGSTTCPHGGI--CSSPNHCTSCDSGYESPDCG-NINECAMDTDNCHANASCTDTDGSFTCTCSDGYTGSGLHC 516
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: UPI0016047EA1 (fibrillin-3-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016047EA1) HSP 1 Score: 126 bits (316), Expect = 1.390e-25 Identity = 69/145 (47.59%), Postives = 84/145 (57.93%), Query Frame = 2
Query: 2081 CQDDALVGYTCNCPG-GYSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNC-AEGTCVNGSCKDLGTTYECF-CSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYEGSGAEC 2506
C + G CNC G GY G C+ND++EC G H+C A C NT G Y C C G+ GDG TCTA+ C TC G + C C+TG++ +C N DECA T NCH A+CTDT+GSFTCTC +GY GSG C
Sbjct: 33 CPHGSPNGPGCNCAGTGYDGTCCDNDIDECATGVHSCHQHATCTNTVGSYRCTCNSGYTGDGRTCTAL--CWGSTTCPRGGI--CSSPNHCTSCNTGYESPDCG-NIDECATDTDNCHEDASCTDTDGSFTCTCNDGYTGSGLHC 172
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: A0A8J9YP62_BRALA (FBN2 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YP62_BRALA) HSP 1 Score: 125 bits (315), Expect = 2.260e-25 Identity = 74/160 (46.25%), Postives = 92/160 (57.50%), Query Frame = 2
Query: 2048 GCSPGVCNTGVCQ----DDALVGYTCNCPG-GYSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNC-AEGTCVNGSCKDLGTTYECF-CSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYEGSGAEC 2506
GCS G TG C A G CNC G GY+G C+ND++EC GT +C A C NT G Y CEC G+ GDG TCTA+ C A TC +G + C C +G++ +C N DECA NCH A+C+DT+GSFTCTC +GY G+G C
Sbjct: 303 GCSGGSSETGSCNRHCPHGAPAGSRCNCAGTGYTGTCCDNDIDECTSGTDHCHQHATCTNTAGSYRCECDSGYTGDGRTCTAL--CWASTTCPHGGI--CSSPDHCSRCDSGYESPDCG-NIDECAADA-NCHVHASCSDTDGSFTCTCSDGYSGTGLHC 456
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: UPI0014590559 (mucin-2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014590559) HSP 1 Score: 121 bits (303), Expect = 9.640e-24 Identity = 73/176 (41.48%), Postives = 92/176 (52.27%), Query Frame = 2
Query: 2018 GDGVTCSNIN--GCSPGVCNTGVCQDDALVGYTCNCPGGYSGDNCENDVNECQIGT--HNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNCAEGTCVNGSCKDLGTTYE---------CFCSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYEGSGAEC 2506
GD TC+ N GC D + G CNC ++G +C D+NEC T HNC+ +A+C NTDG +TC+CK G+ GDG TCTA G SC D TT C CSTGW+GT C + +ECA T+ C A C +T+GS+ CTC GY G G C
Sbjct: 4615 GDSCTCNQTNSFGC------------DTVTG-ACNCTTAWTGADCTVDINECNSTTYPHNCASEADCLNTDGSFTCKCKAGYSGDGLTCTACSGFMFGVGCENSC-DCNTTNAIDCDAVSGVCNCSTGWNGTRCTTDINECANDTNLCIAEADCQNTDGSYMCTCKTGYFGDGLTC 4776
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: UPI001EE5E15D (sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X1 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5E15D) HSP 1 Score: 99.8 bits (247), Expect = 1.640e-19 Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = 2
Query: 2021 DGV--TCSNINGCSPGVCNTGVCQDDALVGYTCNCPG-GYSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNCAEG--TCVNGSCKDL---GTTYECFCSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSF 2461
DGV +CS + C N+G C V TC C G GY+GD+CEND+NEC GT +C +A+C NT+G +TC CKP + G+G++CT + C+ G C+N ++ T C C+ G+ G C+ + DE CT+ EGSF
Sbjct: 22 DGVYGSCSGDDDCK----NSGTC-----VSTTCVCDGTGYNGDSCENDINECDAGTDDCHTNADCKNTEGSFTCTCKPNYAGNGKSCT-LGVCSTGGNECLNSGICNIPSDSTASTCQCAAGYTGGLCETDIDEXXXXXXXXXXXXXCTNAEGSF 166
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: UPI0015FFD322 (signal peptide, CUB and EGF-like domain-containing protein 3 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFD322) HSP 1 Score: 103 bits (257), Expect = 1.100e-18 Identity = 55/120 (45.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query: 2153 DVNECQIGTHNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNC-AEGTCVNGSCKDLGTTYECF-CSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYEGSGAEC 2506
D++EC G H+C A C NT G Y C C G+ GDG TCTA+ C TC G + C C TG++ +C N DEC+ T NCH A+CTDT+GSFTCTC +G+ G+G C
Sbjct: 6 DIDECATGVHSCHQHAACTNTVGSYRCTCDSGYTGDGRTCTAL--CWGSTTCPRGGI--CSSPNHCTSCDTGYESPDCG-NIDECSTDTDNCHEDASCTDTDGSFTCTCNDGHTGNGLHC 120
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: UPI0003F05D2E (mucin-22-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F05D2E) HSP 1 Score: 102 bits (254), Expect = 4.810e-18 Identity = 60/137 (43.80%), Postives = 75/137 (54.74%), Query Frame = 2
Query: 2129 YSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGFQGDGETCTAIDNCAEG----TCVNGSCKDLGTT--YECFCSTGW----DGTNC-DINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYEGSGAEC 2506
++G NC+ D++EC G NC ANC NT G +TC+C G+ DG C I+ C E TC N S ++ T + C C GW + NC DI DEC G NCH A CT+T GSFTC C +GY G EC
Sbjct: 1909 WTGINCQTDIDECDKGLDNCHIYANCTNTVGSFTCQCHDGYYKDGNECKDINECEEEPCSHTCTNLSPRENSYTKGFRCSCPIGWRLQTNYVNCTDI--DECDEGLDNCHIYANCTNTVGSFTCQCHDGYYKDGNEC 2043
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: A0A3P6SHP4_DIBLA (Uncharacterized protein (Fragment) n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6SHP4_DIBLA) HSP 1 Score: 95.1 bits (235), Expect = 2.300e-17 Identity = 60/158 (37.97%), Postives = 80/158 (50.63%), Query Frame = 2
Query: 2039 NINGCSPGVCNTGVCQDDALVGYTCNCPGGYSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGF---QGDGETCT---AIDNCA--EGTCVNGSCKDLGTTYECFCSTGWDGTNCDINEDECALGTHNCHPLAACTDTEGSFTCTCGEGYE 2488
N+N C G CQ+ V C G+ G NCE DV+EC+ ++C D C NT G + CEC PGF + D TC D C +G C +G+C+ C G+ G NC+++ DEC LGTH C + C +T GS+ C C GYE
Sbjct: 108 NLNPRDNRTCIRGECQNGRCV-----CRSGFKGPNCELDVDECREQPNSC--DQRCINTFGSFKCECDPGFNLDRHDNLTCIRDKCFDTCVRGQGECHHGNCQ---------CLPGFTGINCELDIDECRLGTHKCEQI--CVNTRGSYRCECKPGYE 247
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Match: A0A6J8EJI2_MYTCO (Fibulin-1,Fibulin-5,Fibrillin-1 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EJI2_MYTCO) HSP 1 Score: 99.4 bits (246), Expect = 3.140e-17 Identity = 68/160 (42.50%), Postives = 83/160 (51.88%), Query Frame = 2
Query: 2033 CSNING--CSPGVCNTGV--CQDDALVGY--TCNCPGGYSGDNCENDVNECQIGTHNCSPDANCNNTDGWYTCECKPGF--QGDGETCTAIDNCAEGTCVNGSCKDLGTTYECFCSTGWDGTNC-DINEDECALGTHNCHPLAACTDTEGSFTCTCGEGY 2485
CS G CS +CN G+ C + C C G+ G C D+NECQ GT NC NC NT G +TC C+ G+ DG TCTAI N +C NG + C C+ G+ G+ C DINE C GT NC CT+T GSFTC+C GY
Sbjct: 32 CSGYTGSSCSQAICN-GITSCPNGGTCASPNACVCAPGFGGSQCS-DINECQTGTDNCQ--QNCTNTHGSFTCSCESGYIMNSDGATCTAICNGIT-SCPNGG--TCASPNACVCAPGFGGSQCSDINE--CQTGTDNCQQN--CTNTHGSFTCSCESGY 180 The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_969.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-australica_Contig_969.6.2 >prot_C-australica_Contig_969.6.2 ID=prot_C-australica_Contig_969.6.2|Name=mRNA_C-australica_Contig_969.6.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=1047bp MGALRLIQILSFALLASRGFADLSVQWAFQGAAGYDERGSSLVVKDGKIRback to top mRNA from alignment at C-australica_Contig_969:8479..17957- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-australica_Contig_969.6.2 ID=mRNA_C-australica_Contig_969.6.2|Name=mRNA_C-australica_Contig_969.6.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=9479bp|location=Sequence derived from alignment at C-australica_Contig_969:8479..17957- (Chrysoparadoxa australica CS_1217)back to top Coding sequence (CDS) from alignment at C-australica_Contig_969:8479..17957- >mRNA_C-australica_Contig_969.6.2 ID=mRNA_C-australica_Contig_969.6.2|Name=mRNA_C-australica_Contig_969.6.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=3141bp|location=Sequence derived from alignment at C-australica_Contig_969:8479..17957- (Chrysoparadoxa australica CS_1217)back to top |