mRNA_C-australica_Contig_969.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_969.4.1
Unique NamemRNA_C-australica_Contig_969.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A836CAZ1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ1_9STRA)

HSP 1 Score: 232 bits (591), Expect = 7.480e-66
Identity = 137/292 (46.92%), Postives = 174/292 (59.59%), Query Frame = 2
Query:  353 VQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQ-------------------------------------------------------MTALQPRDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIREL 1063
            VQ    S TRF SI+GC+  K+AL E+VVLPL LP ++R+ IF+G RAA  ++L+YG PGTGKTSLA AAA EA A F+ + PSS+LSKYQGESER L  VF +A+AA P+V+FLDE+DAL  SRD  +DLQGRRLLAELLLQ                                                       +  L  RD V V+ ATNRA+ VD ALLRRFH++I V  P  A+  ++   FL GV HS+        + Q A W+GSD+++LC+EAA+AP+REL
Sbjct:  156 VQAPTISATRFDSIVGCEGGKQALRENVVLPLALPPSIRDAIFVGPRAASANVLLYGPPGTGKTSLAEAAAGEAGARFYALSPSSILSKYQGESERMLRAVFAQARAAPPAVVFLDEIDALGCSRDGCEDLQGRRLLAELLLQDATVTEYQGGAGGAAAADATVTXXXXXXXXXXXXXXXXXXXXXQQGRLLAELLLQVGGLSSRDGVAVIAATNRAEDVDVALLRRFHARIQVAGPGPADLRRMCATFLAGVDHSVTDADFANASNQ-ARWSGSDVRALCREAALAPVREL 446          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A059CJZ0_EUCGR (Uncharacterized protein n=6 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CJZ0_EUCGR)

HSP 1 Score: 185 bits (470), Expect = 3.740e-49
Identity = 122/316 (38.61%), Postives = 178/316 (56.33%), Query Frame = 2
Query:  242 RKSQLSNDSEGQAEEVLPAGDSP-GTPLTLRQRQPGVLVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQMTAL--QPRDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELRVRVH 1180
            R ++L      +A    PA DS  G    L +     +V  SP    ++  + G DKAK+ALME V+LP K     R  +F G R     +L++G PG GKT LA A ASE++ATFF V  SS+ SK+ GE E+ +  +FM A +  PSVIF+DE+D++ S+R  +++   RRL +E L+Q   +   P D V V+GATN+   +D+A+LRR   +I +  P +  R  LL + L G   SL    LE LA    G++GSD+Q+LC+EAAM PIREL    +         A  ++RP+   D ++A+  +R  +H
Sbjct:  141 RNNRLVRSQTEKAASAKPAQDSGNGYEAKLVEMINTAIVDRSPS--VKWEDVAGLDKAKQALMEMVILPTK-----RRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPSVIFMDEIDSIMSTRLANENDSSRRLKSEFLIQFDGVTSNPNDSVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRRLLLRNKLKGQSFSLPSGDLERLARDTEGYSGSDLQALCEEAAMMPIRELGTNILKVK------ANQVVRPLRYEDFQQAMTVIRPSLH 443          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A0A0L4C5_CUCSA (Uncharacterized protein n=7 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0L4C5_CUCSA)

HSP 1 Score: 186 bits (471), Expect = 5.110e-49
Identity = 123/310 (39.68%), Postives = 174/310 (56.13%), Query Frame = 2
Query:  245 KSQLSNDSEGQAEEVLPAGDSPGTPLTLRQRQPGVLVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQMTALQPR--DRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELR 1168
            +SQ +N    Q+   +P G  P     L +     +V  SP    ++  I G  KAK+AL+E V+LP K     R  +F G R     +L++G PG GKT LA A ASE+DATFF +  +S  SK+ GESE+ +  +FM AK+  PSVIF+DE+D++ SSR   +    RRL +E L+Q   +     D V V+GATN+   +D+A+LRR   +I +  P +  R  LL H L G  +SL  R LE L  Q  G++GSD+Q+LC+EAAM PIREL    +    D        IR +   D +EA++ +R
Sbjct:  179 RSQPANVGTSQSTREVPDGYDP----KLVEMINTAIVDRSPS--VKWDDIAGLQKAKQALLEMVILPTK-----RRDLFTGLRKPARGLLLFGPPGNGKTMLAKAVASESDATFFNLSAASFTSKWLGESEKLVRTLFMVAKSRQPSVIFMDEIDSVMSSRHAGEHEASRRLKSEFLVQFDGVTSNSTDLVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENGRRLLLKHNLKGQSYSLPTRDLERLVKQTEGYSGSDLQALCEEAAMMPIRELGGNILTVKADQ-------IRSLKYEDFQEAMKVIR 470          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A540LHU3_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LHU3_MALBA)

HSP 1 Score: 187 bits (476), Expect = 5.570e-49
Identity = 120/339 (35.40%), Postives = 183/339 (53.98%), Query Frame = 2
Query:  350 LVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQMTAL--QPRDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELRVRVHTQGSQNTQEAS*VACKKTFMLQGVGSGSGESDVWLLHSSGPGQA-SVTFEICFVFGREPW 1357
            +V  SP    ++  + G +K K+ LME ++LP K     R  +F G R     +L++G PG GKT LA A ASE++ATFF V  SS+ SK+ GE+E+ +  +FM A +  PSVIF+DE+D++ S+R  +++   RRL +E L+Q   +   P D V V+GATN+   +D+A+LRR   ++ +  P    R  LL H L G   SL    +E LA +  G++GSD+Q+LC+EAAM PIREL       G +        +RP+   D ++A+  +R  +     +  +  S   C   F  Q + +     DVW++   G  ++ S       V G  PW
Sbjct:  199 IVDRSPS--VKWEDVAGLEKVKQTLMEMIILPTK-----RRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLVRTLFMVAISRQPSVIFMDEIDSVMSTRQANENDASRRLKSEFLIQFDGVTSNPNDLVIVIGATNKPQELDDAVLRRLVKRVYIPLPDLTARRVLLRHKLKGQAFSLPSGDVERLARETEGYSGSDLQALCEEAAMMPIREL-------GENILTVRANQVRPLRYEDFQKAMTVIRPSLSKSKWEELERGSLCICVNHFNAQDLAT---RKDVWIMKEYGVTESWSWNLLYSIVHGNVPW 520          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: W9SCJ7_9ROSA (Vesicle-fusing ATPase n=2 Tax=Morus notabilis TaxID=981085 RepID=W9SCJ7_9ROSA)

HSP 1 Score: 185 bits (470), Expect = 6.820e-49
Identity = 116/276 (42.03%), Postives = 168/276 (60.87%), Query Frame = 2
Query:  350 LVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQM--TALQPRDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKA-LIRPVTLGDCKEALQELR 1168
            +V  SP    ++  + G +KAK+ALME V+LP K     R  +F G R     +L++G PG GKT LA A ASE++ATFF V  SS+ SK+ GE+E+ +  +FM AK+  PSVIF+DE+D++ S+R  +++   RRL +E L+Q    A    D V V+GATN+   +D+A+LRR   +I V  P ++ R  LL H L G + SL    LE LA +  G++GSD+Q+LC+EAAM PIREL         +T    KA  +RP+   D ++A+  +R
Sbjct:  208 IVDRSPS--VKWEDVAGLEKAKQALMEMVILPTK-----RRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKWVGEAEKLVRTLFMVAKSRQPSVIFMDEIDSMMSTRQANENDASRRLKSEFLIQFDGVASNHNDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDESLRRVLLRHKLKGQEFSLPSGDLERLARETEGYSGSDLQALCEEAAMMPIRELG--------ETILTVKANQVRPLRYDDFRKAMTVIR 468          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A139ATE5_GONPJ (AAA-domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139ATE5_GONPJ)

HSP 1 Score: 179 bits (455), Expect = 8.470e-49
Identity = 108/269 (40.15%), Postives = 156/269 (57.99%), Query Frame = 2
Query:  383 FSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQMTALQP--RDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELRVRVHT 1183
            +  I+G D AKRAL E +VLP     ++R  +F G R+    +L++G PGTGKT LA A ASEA +TFF +  SS+ SK+ GESE+ +  +F  A+   PSVIF+DEVD++ + R  ++    RRL  E L+Q   +     DRV VLGATNR   +DEA LRRF  +I +  P    R  L GHFL   +H L  + L+ L  Q   ++ SD+ +L ++A++ PIREL  + +    D        IRP++  D  EA + ++  VH+
Sbjct:   18 WDDIVGLDSAKRALKEIIVLP-----SLRPELFTGLRSPAKGVLLFGPPGTGKTMLARAVASEAHSTFFAISASSLTSKWVGESEKMVRALFALARQMQPSVIFIDEVDSILTERRENEHDASRRLKTEFLIQFDGVSSASEDRVLVLGATNRPQELDEAALRRFTKRIYIPLPEPKTRESLFGHFLKDQRHDLSTKQLQVLVSQTEQYSPSDLHALARDASLGPIRELGDRVLKVPPDK-------IRPISYNDFVEARKMVKSSVHS 274          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A2K3P5I8_TRIPR (Spastin n=5 Tax=Trifolium TaxID=3898 RepID=A0A2K3P5I8_TRIPR)

HSP 1 Score: 184 bits (466), Expect = 9.690e-49
Identity = 114/266 (42.86%), Postives = 165/266 (62.03%), Query Frame = 2
Query:  350 LVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQMTAL--QPRDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIREL-----SAKGVLAGFDTAEAAKALIRP 1126
            +V  SP    R+  + G +KAK+ALME V+LP K     R  +F G R     +L++G PG GKT LA A ASE++ATFF V  +S+ SK+ GE+E+ +  +FM A +  PSVIF+DE+D++ S+R T+++   RRL +E L+Q   +   P D V V+GATN+   +D+A+LRR   +I V  P +  R  LL H L G   SL  R LE L  +  G++GSD+Q+LC+EAAM PIREL     + +G+   ++  + A A+IRP
Sbjct:  167 IVDRSPS--VRWDDVGGLEKAKQALMEMVILPTK-----RRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVRGLR--YEDFKKAMAVIRP 423          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A2P5AF98_PARAD (Spastin n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5AF98_PARAD)

HSP 1 Score: 185 bits (469), Expect = 1.050e-48
Identity = 113/275 (41.09%), Postives = 164/275 (59.64%), Query Frame = 2
Query:  350 LVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQMTALQPR--DRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELR 1168
            +V  SP    ++  + G +KAK+ALME V+LP K     R  +F G R     +L++G PG GKT LA A ASE+DATFF V  SS+ SK+ GE+E+ +  +FM AK   PSVIF+DE+D++ S R  +++   RRL +E L+Q   +     D + V+GATN+   +D+A++RR   +I V  P +A R  LLGH L G   SL    LE LA +  G++GSD+Q+LC+EAA+ PIREL       G +        +RP+   D ++A+  +R
Sbjct:  213 IVDTSPS--VKWEDVAGLEKAKQALMEMVILPTK-----RRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESDATFFNVSASSLTSKWVGEAEKLVRTLFMVAKFRQPSVIFMDEIDSIMSIRQANENDASRRLKSEFLIQFDGVTSNHNDLIIVIGATNKPQELDDAVMRRLVKRIYVPLPDEALRRLLLGHKLKGQAFSLPNGDLERLARETEGYSGSDLQALCEEAALMPIREL-------GENILTIKANQVRPLRFDDFRKAMTVIR 473          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A6J1D123_MOMCH (spastin n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1D123_MOMCH)

HSP 1 Score: 184 bits (468), Expect = 1.390e-48
Identity = 121/311 (38.91%), Postives = 179/311 (57.56%), Query Frame = 2
Query:  245 KSQLSNDSEGQAEEVLPAGDSPGTPLTLRQRQPGVLVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQ---MTALQPRDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELR 1168
            +SQ +N    ++ + +P G  P     L +     +V  SP    ++  I G  KAK+AL+E V+LP K     R  +F G R     +L++G PG GKT LA A ASE++ATFF V  +S+ SK+ GESE+ +  +FM AK+  PSVIF+DE+D++ S+R  +++   RRL +E L+Q   +T+    D V V+GATN+   +D+A+LRR   +I +  P +  R  LL H L G   SL  R LE L  Q  G++GSD+Q+LC+EAAM PIREL    +    +        IR +   D +EA++ +R
Sbjct:  179 RSQPANVGTSKSVQQVPDGYDP----KLVEMINTAIVDQSPS--VKWDDIAGLQKAKQALLEMVILPTK-----RRDLFTGLRKPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWLGESEKLVRTLFMVAKSRQPSVIFMDEIDSVMSTRHANENEASRRLKSEFLVQFDGVTSNSTTDLVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENGRRLLLKHKLKGQSFSLPSRDLERLVIQTEGYSGSDLQALCEEAAMMPIRELGGNILTVNANQ-------IRALKYADFQEAMKVIR 471          
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Match: A0A7S1DVU0_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DVU0_HEMAN)

HSP 1 Score: 179 bits (454), Expect = 2.540e-48
Identity = 114/302 (37.75%), Postives = 170/302 (56.29%), Query Frame = 2
Query:  308 PGTPLTLRQRQPGVLVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTAVREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVLSKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLLAELLLQMTALQPRD--RVTVLGATNRADFVDEALLRRFHSKILVEEPTKAERVQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIRELSAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELRVRVHTQGSQNTQE 1207
            PG    L       +V  SP    RF+ I G  +AK AL E VVLP     ++R  +F G R+    +L++G PGTGKT LA A A+E D  FF +  S++ SK+ G++E+ ++ +F  A+   PS++F+DEVD++ S+R  S+    RRL  E L+Q   +      RV V+ ATNR   +DEA+ RRF  ++++  P    RV+L+ H L G K SL  R L   A   AG++GSD+ +L K+AAM PIR L A+        A   ++ +RP+T+ D + +L+ +R  V   G Q  +E
Sbjct:   13 PGVDKALANMILDEIVDNSPG--VRFADIAGVPEAKEALKEAVVLP-----SLRPDLFTGLRSPPKGVLLFGPPGTGKTLLAKALATECDCRFFNISASALTSKWVGQAEKLVKALFAVARHLEPSIVFIDEVDSVLSARSESEHEASRRLKTEFLVQFDGVSTTQEGRVIVVAATNRPQELDEAVRRRFTKRMMIPLPEHETRVELMKHLLKGQKASLSTRDLSVAADMTAGFSGSDVAALVKDAAMGPIRSLGAR-------VANVKESEVRPITMQDMQASLKSVRASV---GEQQVRE 297          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_969.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAZ1_9STRA7.480e-6646.92P-loop containing nucleoside triphosphate hydrolas... [more]
A0A059CJZ0_EUCGR3.740e-4938.61Uncharacterized protein n=6 Tax=Myrtoideae TaxID=1... [more]
A0A0A0L4C5_CUCSA5.110e-4939.68Uncharacterized protein n=7 Tax=Benincaseae TaxID=... [more]
A0A540LHU3_MALBA5.570e-4935.40Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
W9SCJ7_9ROSA6.820e-4942.03Vesicle-fusing ATPase n=2 Tax=Morus notabilis TaxI... [more]
A0A139ATE5_GONPJ8.470e-4940.15AAA-domain-containing protein n=1 Tax=Gonapodya pr... [more]
A0A2K3P5I8_TRIPR9.690e-4942.86Spastin n=5 Tax=Trifolium TaxID=3898 RepID=A0A2K3P... [more]
A0A2P5AF98_PARAD1.050e-4841.09Spastin n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P... [more]
A0A6J1D123_MOMCH1.390e-4838.91spastin n=1 Tax=Momordica charantia TaxID=3673 Rep... [more]
A0A7S1DVU0_HEMAN2.540e-4837.75Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_969contigC-australica_Contig_969:4533..8434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3659.XP_004166992.1
PFAMsAAA,Vps4_C
Model size1590
Max annot lvl35493|Streptophyta
KEGG koko:K13254
Hectar predicted targeting categorymitochondrion
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0001578,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0006810,GO:0006928,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008017,GO:0008088,GO:0008089,GO:0008092,GO:0008150,GO:0008568,GO:0009987,GO:0010256,GO:0010458,GO:0010970,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019896,GO:0022402,GO:0022411,GO:0022607,GO:0030496,GO:0030705,GO:0031090,GO:0031468,GO:0031965,GO:0031967,GO:0031975,GO:0034214,GO:0034643,GO:0042623,GO:0043014,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0046907,GO:0047497,GO:0048285,GO:0048487,GO:0051013,GO:0051179,GO:0051228,GO:0051230,GO:0051234,GO:0051259,GO:0051260,GO:0051301,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0061024,GO:0061640,GO:0065003,GO:0071840,GO:0072384,GO:0090148,GO:0098930,GO:0099111,GO:0140014,GO:0140096,GO:1902850,GO:1903008,GO:1903047
Exons14
Evalue4e-51
EggNOG OGsCOG0464@1|root,KOG0740@2759|Eukaryota,37HKP@33090|Viridiplantae,3GBT4@35493|Streptophyta,4JJ75@91835|fabids
EC3.6.4.3
DescriptionBelongs to the AAA ATPase family
Cds size1203
COG categoryO
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_969.4.1prot_C-australica_Contig_969.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_969 4546..8060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588834.343336-UTR-C-australica_Contig_969:4532..45451682588834.343336-UTR-C-australica_Contig_969:4532..4545Chrysoparadoxa australica CS_1217UTRC-australica_Contig_969 4533..4545 +
1682588834.5009763-UTR-C-australica_Contig_969:8060..84341682588834.5009763-UTR-C-australica_Contig_969:8060..8434Chrysoparadoxa australica CS_1217UTRC-australica_Contig_969 8061..8434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588834.3571098-CDS-C-australica_Contig_969:4545..46831682588834.3571098-CDS-C-australica_Contig_969:4545..4683Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 4546..4683 +
1682588834.3682866-CDS-C-australica_Contig_969:4757..48321682588834.3682866-CDS-C-australica_Contig_969:4757..4832Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 4758..4832 +
1682588834.3807242-CDS-C-australica_Contig_969:4949..50061682588834.3807242-CDS-C-australica_Contig_969:4949..5006Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 4950..5006 +
1682588834.3921502-CDS-C-australica_Contig_969:5090..51881682588834.3921502-CDS-C-australica_Contig_969:5090..5188Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 5091..5188 +
1682588834.4023125-CDS-C-australica_Contig_969:5385..54761682588834.4023125-CDS-C-australica_Contig_969:5385..5476Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 5386..5476 +
1682588834.4121556-CDS-C-australica_Contig_969:5694..57221682588834.4121556-CDS-C-australica_Contig_969:5694..5722Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 5695..5722 +
1682588834.4221573-CDS-C-australica_Contig_969:5852..59911682588834.4221573-CDS-C-australica_Contig_969:5852..5991Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 5853..5991 +
1682588834.4323902-CDS-C-australica_Contig_969:6201..62651682588834.4323902-CDS-C-australica_Contig_969:6201..6265Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 6202..6265 +
1682588834.4422922-CDS-C-australica_Contig_969:6344..63891682588834.4422922-CDS-C-australica_Contig_969:6344..6389Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 6345..6389 +
1682588834.452237-CDS-C-australica_Contig_969:6668..67401682588834.452237-CDS-C-australica_Contig_969:6668..6740Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 6669..6740 +
1682588834.461687-CDS-C-australica_Contig_969:6846..69521682588834.461687-CDS-C-australica_Contig_969:6846..6952Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 6847..6952 +
1682588834.4705977-CDS-C-australica_Contig_969:7212..72621682588834.4705977-CDS-C-australica_Contig_969:7212..7262Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 7213..7262 +
1682588834.4809933-CDS-C-australica_Contig_969:7641..77381682588834.4809933-CDS-C-australica_Contig_969:7641..7738Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 7642..7738 +
1682588834.490856-CDS-C-australica_Contig_969:7917..80601682588834.490856-CDS-C-australica_Contig_969:7917..8060Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 7918..8060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_969.4.1

>prot_C-australica_Contig_969.4.1 ID=prot_C-australica_Contig_969.4.1|Name=mRNA_C-australica_Contig_969.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=401bp
MALIALLNRSTSLVRSGIGCCRCQDGTQGSCSACLEALVGARALLQFAMG
SMEDALQGYGNSVVLCCSVIEGAILGRKSQLSNDSEGQAEEVLPAGDSPG
TPLTLRQRQPGVLVQPSPKSETRFSSIIGCDKAKRALMEHVVLPLKLPTA
VREVIFIGARAAGNHILMYGAPGTGKTSLANAAASEADATFFQVLPSSVL
SKYQGESERALERVFMEAKAAAPSVIFLDEVDALASSRDTSDDLQGRRLL
AELLLQMTALQPRDRVTVLGATNRADFVDEALLRRFHSKILVEEPTKAER
VQLLGHFLMGVKHSLEQRALEELAGQMAGWTGSDIQSLCKEAAMAPIREL
SAKGVLAGFDTAEAAKALIRPVTLGDCKEALQELRVRVHTQGSQNTQEAS
*
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mRNA from alignment at C-australica_Contig_969:4533..8434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_969.4.1 ID=mRNA_C-australica_Contig_969.4.1|Name=mRNA_C-australica_Contig_969.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3902bp|location=Sequence derived from alignment at C-australica_Contig_969:4533..8434+ (Chrysoparadoxa australica CS_1217)
AGTTCAGCGTGAGATGGCGTTGATTGCGCTGCTGAACCGGTCCACGTCTC TGGTGAGGAGTGGAATAGGCTGCTGCAGGTGCCAAGATGGGACTCAAGGC AGTTGCAGCGCTTGCCTTGAAGCCTTGGTTGGGGCAAGAGCTTTATTGCA GGTGGAGAAAGAAGGGGAAGAGCATCGAATCCCCCGCTTCCGATTGATGC CCGCTTTCTCCTCTTGACTCTTCAGTTTGCTATGGGCTCAATGGAAGATG CTCTTCAGGGATACGGCAACTCAGTGGTGCTCTGCTGCTCAGTCATTGAG GTGGGGAGGAATCGGGGGCACTACCTGGCTAAGCGAGCGCTTGCAATGCC ACCACACCACTTCGACCGCAGGCAGCTACACACCACCTACCCTCTTGAAA CTCTGCATTGTTTGCAGGGGGCAATCCTAGGGCGCAAAAGCCAGCTCTCG AATGACTCTGAAGGGCAGGCTGAGGTATTGGAGGCATAGCCCTCACAGTC TGCACGCTCATCTCTCTCGCCTAATCACACCCCATACCCTTCACTTTTCT TTTTGGAGGAGGTGCTCCCTGCTGGTGACTCACCTGGCACGCCGCTTACT TTGAGGCAGCGGCAGCCTGGAGTATTAGTGCAGCCTAGCCCAAAGTCAGA GACCAGGTAGGTATCAGAGAGTTATGGCATGTACCCTCCAAACCGCTACC CTCATCCTTAAGCCTCTTCGCTGTAACCCTCAAGCACCTCAAGCTGGGCT GACTGACTCCTGGGCCCTCCCTAGCAGAACCTCTACCTCCCATCCACATC CCAGCACGTTTTCTAACCCCTCTGTGTACCTGTGTGGGGGAATGAAAAAA TAGATTCAGCAGCATCATTGGGTGTGACAAAGCCAAGAGGGCTTTGATGG AACATGTTGTGCTGCCACTGAAGCTCCCGACAGCTGTAAGGGAGGTGAGT GAGAGCTGCTACCTGGGATTTGATTTGTGATACATGCACGATCAGGGCCC TGCCTTCTTGCCATCTCAATAGCCTCAGGCTATCATAACGGACATTGTGG TGTGGGCAACTGTATTGACTTGGCTAATACCGTGATGGCTTACTTTTGAG CCACACACACACGCAAGAGCCTGTGCTTATGGTAGTCACTGCTGCGCCCA TCTCCACAACAGGTCATATTTATTGGGGCGAGGGCAGCAGGTGTGCTAAG CTAACGTTAATCAAATGGAAGAGAGTTAAGGATGAAGACTTTCCTTCCTC CTGCACTCACTTACTCACTCACAAAGTCACTGATTGGTTGGTTTTCTCTA CTTCCGCTTGCGACGCACAGGCAATCACATCCTCATGTATGGAGCACCTG GCACAGGGAAGACCTCGCTGGCCAACGCGGCAGCCAGCGAGGCCGATGCC ACCTTCTTTCAAGTGCTCCCCTCCTCTGTCCTCTCAAAGTATCAGGGGGA GAGCGAGAGGTTAGTTAAGAGAGAGGAGAGCTGGGCGCCTTACTGGGGTG GGGTGCCTTGCCTTTCAGTGATTGCTTGCTGTGAGGAACTCTCTATAGTC ATGAAAATGAGAGGAGAGTTTCGTGACCCTGCTCTGCACGTGATGGGCGA GTGGGAGTTAAGAGGCTGTAGCTTGCTCCGCGTGGCCATCCCTTTGAGCT CACCAAACCATACCTCCAGGGCACTTGAGCGCGTGTTTATGGAGGCCAAG GCTGCTGCTCCTTCCGTAATATTTCTTGATGAGGTGAAGTTGCCCTGGCC TAACCTTTGACGTCAACCACAGTCCAGTTACCTCCCTAGTGCCCTTCCAA CAACGTGATTAGGTGGATGCACTGGCGTCAAGCAGGGACACCAGTGATGA TCTTCAAGTATGAAGCTAGCAGCACCAGCACAACTCTAACACCCCCTCAC ATAATCCTCCTCGTCTCATTCCAATTGCCTTCAATTCCCTCTGCTCGACT AACTTAGTACCATGCCACCTTGACGTGATGATGTGATTTGGCGAGGGCTC CAGAGCTCCAAATTGCTGCTTCTGTAACCCCTCTTTGGGTATTCCGCTTC CCTCAATGAATTACTCGACCCTTAACCTGACCCCGACTTGAATCATTTTA ACCAACCCAAATCATTTCAACCTGCTTGTACACTAGGGTCGACGACTGCT GGCCGAGCTTCTCTTGCAAATGACGGCACTGCAGCCTAGGGACCGTGTCA CCGTGCTGGTAAGGATGCACAGTAGTCACTGCACCCTCCTCTTTCATCGT CACTTAAAGCCTCACTGTGCTCCTGCTGCGTCACGCTTATTGCTGTTCAT GCTTATGTGGTCAGGGGGCGACCAACCGTGCAGACTTTGTGGATGAGGCG CTGCTGAGGAGGTTCCACTCCAAGATACTAGTGGAGGAGCCCACCAAGGC GGAGAGGGTGCAACTACTAGGTAATGGCGATGAGAGGGAGAGCCCAATGG GTTGTGGGGTGCAAGCAGGACTAGCTGCTGTATTCCATGGCTTTGTTGCG TTGGTGCTGAGCACTGGTGGATTAACTGTGTTGTATTGTCCTGCTGCTTT GGCTGCCGAGCTTCAGCTGCAAAGTGGCTTAAGTGACGGCATTGCTTAGC TGCTTTAGCAGTGCTTCAGTTGTGACGAGCTGTGAAGCAGCGCTGCATTC AGTCTCATATCTACACACTTTGGCTGCCAGGCCACTTCCTCATGGGCGTC AAGCACTCTCTGGAGCAAAGGGCCCTCGAGGTGGTGCCACCTGTTGTTGT GAATGCCACATATAGTCCAATACTCAGCTGCTTTCTCATGCTGAGAATGC TGAGAACTGGAACGTTTACTTGCTTTCATCATACCGCACTAAACCTAACC TAACCTACCTGGCTTATCATCGGTTTTGTTCTACTTCCATTGCGTTGCTA CACCTGACTGCCCAGTGGCCATCAATGACCATTTGTTTTCCTTTTTCCCC TTTTCCCTTTTGCCCTTTTAGCTATGGCTGCTAAGCTAATGCAGCAGACT TCTACCACCTCGCCCATGTTCATTATTGATTGCGTCTATTGTGTCAACCA ACTTACCGTGCTTCCTTTGCTAGCTCACCTGGTTTTATCCTATTTTTTTT CTTGCACAGGAGCTGGCCGGCCAGATGGCAGGCTGGACAGGCAGCGACAT CCAGAGCCTGTGCAAGGAAGCTGCCATGGCACCCATCAGGGAACTCAGTG CCAAAGGTTGCAAATTGCTTACTCATTCACGCCCACATGCACAGTGACCT GCAGCTTTCGAGTAGCACACTTCTTGTTTTTGGCTCCTTTTTCCTCTCTC TACCCCTTCACACTGCTGATTCAGCTAAGAGCAAAGAACTCTCCATTACC ACTGGCTCAGCTCCTTGCCTTCTCTGCCATTGCAGGTGTGCTAGCAGGCT TTGACACGGCCGAGGCAGCCAAGGCATTGATTAGACCAGTGACTTTGGGC GACTGTAAAGAGGCGCTCCAGGAGCTTAGAGTTAGAGTGCACACTCAGGG CTCACAGAACACCCAAGAGGCGAGTTGAGTTGCTTGTAAAAAGACGTTTA TGTTGCAGGGAGTGGGGTCTGGGAGTGGAGAGAGTGATGTATGGTTGCTC CATTCCAGTGGGCCAGGCCAGGCTAGTGTGACTTTCGAGATTTGTTTTGT TTTTGGTAGAGAGCCCTGGCCTGTAGATGTGAAAAGGAGGGGTAAAGGGA GATGAAGGAGGGCTTTCATGGGCGATGACGGCGACACGCAACATCGTTTT GCTTATTAATTGTTGATTATTGTGGATAAGGCCATACATGGCAGAGGCGC CTCCAAAGAGATAGCCTAGGCTGTGGTTCTTCCCCCTCGATAGGTATATC ACATGGGTCAAGGCTGTGTGGTCCTCCCAACGCAGCACTAAATTTAACTG CG
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Coding sequence (CDS) from alignment at C-australica_Contig_969:4533..8434+

>mRNA_C-australica_Contig_969.4.1 ID=mRNA_C-australica_Contig_969.4.1|Name=mRNA_C-australica_Contig_969.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1203bp|location=Sequence derived from alignment at C-australica_Contig_969:4533..8434+ (Chrysoparadoxa australica CS_1217)
ATGGCGTTGATTGCGCTGCTGAACCGGTCCACGTCTCTGGTGAGGAGTGG
AATAGGCTGCTGCAGGTGCCAAGATGGGACTCAAGGCAGTTGCAGCGCTT
GCCTTGAAGCCTTGGTTGGGGCAAGAGCTTTATTGCAGTTTGCTATGGGC
TCAATGGAAGATGCTCTTCAGGGATACGGCAACTCAGTGGTGCTCTGCTG
CTCAGTCATTGAGGGGGCAATCCTAGGGCGCAAAAGCCAGCTCTCGAATG
ACTCTGAAGGGCAGGCTGAGGAGGTGCTCCCTGCTGGTGACTCACCTGGC
ACGCCGCTTACTTTGAGGCAGCGGCAGCCTGGAGTATTAGTGCAGCCTAG
CCCAAAGTCAGAGACCAGATTCAGCAGCATCATTGGGTGTGACAAAGCCA
AGAGGGCTTTGATGGAACATGTTGTGCTGCCACTGAAGCTCCCGACAGCT
GTAAGGGAGGTCATATTTATTGGGGCGAGGGCAGCAGGCAATCACATCCT
CATGTATGGAGCACCTGGCACAGGGAAGACCTCGCTGGCCAACGCGGCAG
CCAGCGAGGCCGATGCCACCTTCTTTCAAGTGCTCCCCTCCTCTGTCCTC
TCAAAGTATCAGGGGGAGAGCGAGAGGGCACTTGAGCGCGTGTTTATGGA
GGCCAAGGCTGCTGCTCCTTCCGTAATATTTCTTGATGAGGTGGATGCAC
TGGCGTCAAGCAGGGACACCAGTGATGATCTTCAAGGTCGACGACTGCTG
GCCGAGCTTCTCTTGCAAATGACGGCACTGCAGCCTAGGGACCGTGTCAC
CGTGCTGGGGGCGACCAACCGTGCAGACTTTGTGGATGAGGCGCTGCTGA
GGAGGTTCCACTCCAAGATACTAGTGGAGGAGCCCACCAAGGCGGAGAGG
GTGCAACTACTAGGCCACTTCCTCATGGGCGTCAAGCACTCTCTGGAGCA
AAGGGCCCTCGAGGAGCTGGCCGGCCAGATGGCAGGCTGGACAGGCAGCG
ACATCCAGAGCCTGTGCAAGGAAGCTGCCATGGCACCCATCAGGGAACTC
AGTGCCAAAGGTGTGCTAGCAGGCTTTGACACGGCCGAGGCAGCCAAGGC
ATTGATTAGACCAGTGACTTTGGGCGACTGTAAAGAGGCGCTCCAGGAGC
TTAGAGTTAGAGTGCACACTCAGGGCTCACAGAACACCCAAGAGGCGAGT
TGA
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