mRNA_C-australica_Contig_969.1.3 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_969.1.3
Unique NamemRNA_C-australica_Contig_969.1.3
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_969.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_969contigC-australica_Contig_969:103..4664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2395
Hectar predicted targeting categoryother localisation
Exons16
Cds size1884
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588834.1183999-UTR-C-australica_Contig_969:102..1041682588834.1183999-UTR-C-australica_Contig_969:102..104Chrysoparadoxa australica CS_1217UTRC-australica_Contig_969 103..104 -
1682588834.2866423-UTR-C-australica_Contig_969:3974..43451682588834.2866423-UTR-C-australica_Contig_969:3974..4345Chrysoparadoxa australica CS_1217UTRC-australica_Contig_969 3975..4345 -
1682588834.2991421-UTR-C-australica_Contig_969:4526..46641682588834.2991421-UTR-C-australica_Contig_969:4526..4664Chrysoparadoxa australica CS_1217UTRC-australica_Contig_969 4527..4664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588834.1274457-CDS-C-australica_Contig_969:104..2891682588834.1274457-CDS-C-australica_Contig_969:104..289Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 105..289 -
1682588834.1369395-CDS-C-australica_Contig_969:373..4211682588834.1369395-CDS-C-australica_Contig_969:373..421Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 374..421 -
1682588834.1477082-CDS-C-australica_Contig_969:554..5991682588834.1477082-CDS-C-australica_Contig_969:554..599Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 555..599 -
1682588834.1587634-CDS-C-australica_Contig_969:678..7601682588834.1587634-CDS-C-australica_Contig_969:678..760Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 679..760 -
1682588834.1705186-CDS-C-australica_Contig_969:1019..11291682588834.1705186-CDS-C-australica_Contig_969:1019..1129Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 1020..1129 -
1682588834.180396-CDS-C-australica_Contig_969:1341..16081682588834.180396-CDS-C-australica_Contig_969:1341..1608Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 1342..1608 -
1682588834.1894715-CDS-C-australica_Contig_969:1683..17821682588834.1894715-CDS-C-australica_Contig_969:1683..1782Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 1684..1782 -
1682588834.2003384-CDS-C-australica_Contig_969:1956..20551682588834.2003384-CDS-C-australica_Contig_969:1956..2055Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 1957..2055 -
1682588834.2108078-CDS-C-australica_Contig_969:2256..23481682588834.2108078-CDS-C-australica_Contig_969:2256..2348Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 2257..2348 -
1682588834.2206938-CDS-C-australica_Contig_969:2461..25481682588834.2206938-CDS-C-australica_Contig_969:2461..2548Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 2462..2548 -
1682588834.2304022-CDS-C-australica_Contig_969:2742..28421682588834.2304022-CDS-C-australica_Contig_969:2742..2842Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 2743..2842 -
1682588834.2409325-CDS-C-australica_Contig_969:3020..31661682588834.2409325-CDS-C-australica_Contig_969:3020..3166Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 3021..3166 -
1682588834.2515764-CDS-C-australica_Contig_969:3253..33441682588834.2515764-CDS-C-australica_Contig_969:3253..3344Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 3254..3344 -
1682588834.2668324-CDS-C-australica_Contig_969:3430..35961682588834.2668324-CDS-C-australica_Contig_969:3430..3596Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 3431..3596 -
1682588834.275487-CDS-C-australica_Contig_969:3707..39741682588834.275487-CDS-C-australica_Contig_969:3707..3974Chrysoparadoxa australica CS_1217CDSC-australica_Contig_969 3708..3974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_969.1.3prot_C-australica_Contig_969.1.3Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_969 105..3974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_969.1.3

>prot_C-australica_Contig_969.1.3 ID=prot_C-australica_Contig_969.1.3|Name=mRNA_C-australica_Contig_969.1.3|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=628bp
MRRDRPSPRAISRARTPLQHEPSQLSFIAELKGSEGEAFSYDNVLRTPRG
GGGGNITPKAQAQIEVLAKQLEDLNASPRLSCRRSGLYEDMTERREGKVN
IDVVMSKLNEKTGRTPPEFTLSSPPPRRPHVSGQKSPLHEAVYDGKVHKT
KKLLLGEAPASPPPQPETQKTQEKSSEPSKVRAREGRLCSKVVRAAWGRV
SSPPCLPEPGGKRKSECIDAPSEAKPSDLHPLINAKDEEGSTPLHVAALA
ECSKIPRVLISQGADVNAVNSKGSTPLHWAATIGNREMVQMLLHEGADVN
AKDQDGRTALHGACAHSFAKISALLVNSGSDVAAKAQDGSTPLHLAAGQG
SKDIAAMLVKHGAPLEAVMRDGRIPLHAAAQRGFACGAKVKATGVLPCLN
CYSFLAHLWCLFSTTHPRVSYLFDQSCTSSTHIGSHQPGHASLAKKLLDW
GSSYGAPDGRGHTPLYLAQLNGHRDVVYMLALHMEATLHDEAVLATSISK
AAEMPVEQMPKHLAPLLTHVLDGKPTQLKAWKSLLGMLQEKVSEIEAHNN
AHSSLPKRRRLSKEQTENLVEAKMGVNGATLTKQLSELQEAQVNKAEEDA
GTGGATTAPVTPRTPLAKIFVAGESGH*
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mRNA from alignment at C-australica_Contig_969:103..4664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_969.1.3 ID=mRNA_C-australica_Contig_969.1.3|Name=mRNA_C-australica_Contig_969.1.3|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=4562bp|location=Sequence derived from alignment at C-australica_Contig_969:103..4664- (Chrysoparadoxa australica CS_1217)
CCAACCAAGGCTTCAAGGCAAGCGCTGCAACTGCCTTGAGTCCCATCTTG
GCACCTGCAGCAGCCTATTCCACTCCTCACCAGAGACGTGGACCGGTTCA
GCAGCGCAATCAACGCCATCTCACGCTGAACTGGGGGAGCGAAGGTGTGA
ACGCGTCAGTCGCTTGAAGTAGGCCGAGAGATGAGCCCAGGGGGTAATAA
CGTGGGAGTTGAAGGCAGGCCACGCCTGGGAGGCAGGGGGAGGAAGATCT
GATCCCGATCATGGGAGAACTCAAATTTGGCTGAAGATTGGTTGACGAAG
GGCTCTGCTTTACCTCCAGGCCTCTCCCTCTCCATCTTGCTATCTCCAGA
GACTTGGGCGTGAGCGAGTACGTATAGGAGGCTGAGAGGCTGAGAAGGAG
CCAAATTTTTCTTTTTTTCCGTGAGAGTGCCCCTTCGCCAATAATAATTT
GGCGACAACACGACAACACAAGGTGAGGCCAGGAGTTTGCCACAAGGGGC
AGCAAGGAAGCTCACTAGACGAAATCGGCAGGTTGGACATCCCCAACAGG
AGAAGGACCCTCTCCATTGTCCCCATTAATTACTCTTCTAGGCACCGCCT
TCCTGACCCCTTTTACTTTACCTTAGAGTCCTTCGCAGCACGCGACCAAT
GGGCAGGCACCTTTCCTGAGCTTGGAGGCAGGCTCTGCAGATGAGGAGGG
ATCGACCTTCACCGAGGGCCATTTCAAGAGCGAGAACGCCTCTACAGCAT
GAGCCGTCCCAGCTTTCTTTCATCGCTGAGCTTAAGGGAAGCGAAGGAGA
GGCTTTCTCCTACGATAATGTACTCAGAACTCCTCGAGGAGGGGGCGGGG
GTAACATCACACCTAAAGCTCAAGCACAAATCGAAGTTCTTGCCAAGCAA
TTGGAAGACCTGAACGCGTCACCGAGACTGAGCTGTAGGAGAAGTGGCCT
ATACGAAGTAAGCTTCCCCTCGTCCTCTCCTTCTTGACCTCTCCTTCCCC
TCCTCTCCTCCCCCCCTCTCCTCTCCCGCTCTCCTCCCTAACCTCTCCTC
CTGACCCAACTCATCTAGGATATGACTGAAAGGAGGGAGGGAAAGGTTAA
TATTGATGTGGTGATGAGCAAGTTGAATGAGAAGACAGGCAGGACGCCTC
CTGAATTCACGCTCTCATCCCCACCACCAAGAAGGCCTCATGTATCTGGT
CAGAAGTCTCCGCTTCATGAGGCAGTATATGACGGTCAGTGCCACTCAGC
CTTTGCTCTCACTTCCTCACTGAAATGCACACCCTCTCCCCAGTGCTCTC
ACCTCCTGCAACCCCATCAGGCAAGGTACACAAGACCAAAAAGCTTCTAT
TAGGCGAAGCACCTGCCTCTCCCCCCCCTCAGCCAGAGACACAAAAAACA
CAGGAGAAGAGGTGCTTCCATTCACCTCAACCGACTTAGCTTCCATACAC
TTCAACGCCCAGCTTACCTTCCATCCATTCGCATGGTGCTCTTTACAGCT
CGGAGCCTTCAAAGGTGAGGGCCCGTGAGGGCCGGCTGTGCAGCAAAGTT
GTTAGGGCTGCTTGGGGACGTGTGAGCAGTCCCCCTTGCTTACCTGAACC
AGGGGGGAAGAGGAAATCAGAGTGCATTGATGCTCCCAGTGAAGGTGGTG
TATGCTAGCCACCAAACCGATCAACTAACAAATCAATCACAGTCAATCAG
ACTTGTCGATGCCCAGATAAACAGTGGGGTGGGGGTACAGAGTTGCAGCA
AGACTTGTGTTTCTTTTGCAACACCTCAGCCCCAACCCTCACCTCTCTCA
CGCGTTATTCTACCTCATGCAGCTAAGCCAAGTGATCTCCACCCCTTGAT
AAACGCCAAGGATGAGGAGGGCTCCACGCCACTCCATGTGGCTGCCCTAG
CAGAATGTAGCAAGATACCCAGGTGGACGGATACCCTTACCATCATTATG
ACACGAACTCCATTCTACCACACTTTACAGAGCTCCATTCCTAGGCAGGG
CTATGATCGCTTCTATTTCTTTGCTACCAACTCTTTCGTTCTTTGACACT
TTGGGCAGCTCAAGCTCGGTCCCTGCTCTTACCCATCCACTTCTGTGGTC
TGATGCGGCTCCTCAGGGTGTTGATCAGCCAGGGTGCCGATGTCAATGCG
GTCAACTCCAAGGGAAGCACACCTCTGCATTGGGCTGCCACGATCGGCAA
CAGGTACTCTTGAGGCTCCTCAGCTCCTTTGCTTTGCCCCAGCTAAGGGA
TGCAAGCTCAAACCCCTGCAGAGCCTGCCTTTCCTCATCTCACATGAGCC
CAATGCACCCCCCCAGAGAGATGGTGCAGATGCTGCTTCACGAGGGAGCT
GACGTCAATGCTAAGGACCAGGATGGCAGGACGGCTCTGCATGGAGCCTG
CGCTCACTGTACGTTTAGTTTAGCTTAGCCCAAGCATCAGGGCCTGGCAT
GCCTGCACCAGCATTCCACCCGCTTGCAGCAGCCGTTAATACAGCTTACC
TGGCCTTCCAGTCCAGTCCAGTCATATCTACTGCTGCTGCAGCTCCACAA
TGGCACCCACTCTCTCTCGTCTAACAAAGCATTATCCCTGTGCTCCTTCC
CACCCCAAGCCTTTGCTAAGATTTCAGCGCTGCTGGTCAACAGCGGCTCT
GACGTGGCTGCCAAGGCACAGGACGGCTCCACACCGCTGCACCTAGCTGC
GGGGCAAGGTACAACATGCCCAAGAGGAATGCTTCTTCTTCTTGCATTCA
ACCCACCTCCCAAGGGCATCAGCGCAGGCCTACTTATGCTGGACGTGCTT
CCTTGCGTGGCCGTTAGCGCTCTCTGTTCAGAAGGTGAAATAGCGTACTG
ACGCAAGTTCCCCCTTTGCCATGTCCCCTCAGGGTCTAAGGACATAGCTG
CCATGTTGGTAAAGCACGGTGCTCCGCTGGAAGCTGTCATGCGAGACGGC
CGCATACCACTGCACGCTGCAGCTCAGCGAGGTCTCTGCAAGCCAACCCA
ACCCATACATAACGAATGTCTCAACCCCCATTGACCTTAGTGGCATCCCT
CATTAGGCTTTGCTTGCGGGGCTAAGGTTAAGGCTACCGGCGTCCTTCCC
TGCCTGAACTGTTATAGCTTCCTTGCTCACCTCTGGTGTCTTTTCTCTAC
CACGCACCCACGCGTCTCTTACTTGTTTGATCAATCATGCACCAGCTCAA
CTCACATCGGCTCACATCAACCAGGCCATGCCAGCCTAGCCAAGAAGCTG
CTGGACTGGGGCTCCAGCTATGGCGCTCCAGATGGCAGGGGGCACACACC
GCTGTACCTGGCCCAGCTCAATGGTGAGCAGCCAAGCCACCACCCAATAA
CAAATAAACAAGCCTGACCTAGCAAACAAACGCACGTGCTACCCGTTTGC
TGCACAGCCAGCAGTGTCCTACCTTCGCACTGCTAGCTTCCATGCCACCT
CAGTCTCTCTCTCACCCCTTGCCCTTGGCTGGTTCAGAGCAGACTATGAT
ATAACTCCTCATCTTCACCCTGCCTGACCTACAAGGCCACCGCGATGTGG
TGTATATGCTGGCACTGCATATGGAAGCAACGCTTCATGATGAGGCCGTT
CTGGCGACTAGTATTAGCAAGGCAGCTGAGATGCCCGTGGAGCAGGTGAC
TTGCCTAAGCCAGCAAAAGCTAGAGCTACCGGACTGGCCCAACTTGTATT
TTCTTAGCACTTTGGATCATTTGCTAGCTATGGCATACTAGTCATGCTTT
CATATTTTGTGGTGCACAGAGCTAGCTTTAGATCTTCACCATGCTGCACG
TGCCTCACATATATACATACATACATATTTATACATTGACGGGGACTGAG
CACTCATCTGCATATTATTACACCCACCTCAACGTAGCCCTTGCGTGTAT
GTAGATGCCCAAGCACCTGGCACCACTGCTCACTCATGTGCTGGATGGCA
AGCCAACACAGCTGAAGGCTTGGAAGAGCTTACTGGGTACTCTCGTGCGT
CCCTTCAAACCTCCTCGTTTCCATGACCTGACATTTGACCTTCCGACGAA
CTCCCTGACCACCAGGCATGCTGCAGGAGAAGGTCTCTGAGATTGAGGCA
CACAACAATGGTGAGGGACTTGTCGGATGCGCCTATCAGTGTGATTATTA
GTAGCTGCTGTCTTTTGCCATTATCAACTTCACTGCACACATGCCCTGAG
CGTTTCCTTTCCTTAACCTGTTTGATATCCCCTATACTTACAGCACATTC
ATCACTGCCCAAGAGGAGGCGCCTTAGCAAGGAGCAAACTGGTAAAGCCA
AGCCATCCTTTCCTATTTTTCTTCTCTCCTTGTTGCTGTAGCAAGCACCC
CCTCACCTACAAACTTTGGCCACAGAGAACTTAGTGGAAGCCAAAATGGG
AGTGAATGGAGCAACCCTGACAAAGCAGTTGAGTGAGCTGCAAGAGGCCC
AGGTTAATAAAGCTGAGGAAGATGCAGGCACTGGCGGTGCTACTACTGCA
CCAGTCACTCCAAGGACTCCTCTTGCCAAGATCTTCGTGGCAGGGGAGAG
CGGGCATTGAAG
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Coding sequence (CDS) from alignment at C-australica_Contig_969:103..4664-

>mRNA_C-australica_Contig_969.1.3 ID=mRNA_C-australica_Contig_969.1.3|Name=mRNA_C-australica_Contig_969.1.3|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1884bp|location=Sequence derived from alignment at C-australica_Contig_969:103..4664- (Chrysoparadoxa australica CS_1217)
ATGAGGAGGGATCGACCTTCACCGAGGGCCATTTCAAGAGCGAGAACGCC
TCTACAGCATGAGCCGTCCCAGCTTTCTTTCATCGCTGAGCTTAAGGGAA
GCGAAGGAGAGGCTTTCTCCTACGATAATGTACTCAGAACTCCTCGAGGA
GGGGGCGGGGGTAACATCACACCTAAAGCTCAAGCACAAATCGAAGTTCT
TGCCAAGCAATTGGAAGACCTGAACGCGTCACCGAGACTGAGCTGTAGGA
GAAGTGGCCTATACGAAGATATGACTGAAAGGAGGGAGGGAAAGGTTAAT
ATTGATGTGGTGATGAGCAAGTTGAATGAGAAGACAGGCAGGACGCCTCC
TGAATTCACGCTCTCATCCCCACCACCAAGAAGGCCTCATGTATCTGGTC
AGAAGTCTCCGCTTCATGAGGCAGTATATGACGGCAAGGTACACAAGACC
AAAAAGCTTCTATTAGGCGAAGCACCTGCCTCTCCCCCCCCTCAGCCAGA
GACACAAAAAACACAGGAGAAGAGCTCGGAGCCTTCAAAGGTGAGGGCCC
GTGAGGGCCGGCTGTGCAGCAAAGTTGTTAGGGCTGCTTGGGGACGTGTG
AGCAGTCCCCCTTGCTTACCTGAACCAGGGGGGAAGAGGAAATCAGAGTG
CATTGATGCTCCCAGTGAAGCTAAGCCAAGTGATCTCCACCCCTTGATAA
ACGCCAAGGATGAGGAGGGCTCCACGCCACTCCATGTGGCTGCCCTAGCA
GAATGTAGCAAGATACCCAGGGTGTTGATCAGCCAGGGTGCCGATGTCAA
TGCGGTCAACTCCAAGGGAAGCACACCTCTGCATTGGGCTGCCACGATCG
GCAACAGAGAGATGGTGCAGATGCTGCTTCACGAGGGAGCTGACGTCAAT
GCTAAGGACCAGGATGGCAGGACGGCTCTGCATGGAGCCTGCGCTCACTC
CTTTGCTAAGATTTCAGCGCTGCTGGTCAACAGCGGCTCTGACGTGGCTG
CCAAGGCACAGGACGGCTCCACACCGCTGCACCTAGCTGCGGGGCAAGGG
TCTAAGGACATAGCTGCCATGTTGGTAAAGCACGGTGCTCCGCTGGAAGC
TGTCATGCGAGACGGCCGCATACCACTGCACGCTGCAGCTCAGCGAGGCT
TTGCTTGCGGGGCTAAGGTTAAGGCTACCGGCGTCCTTCCCTGCCTGAAC
TGTTATAGCTTCCTTGCTCACCTCTGGTGTCTTTTCTCTACCACGCACCC
ACGCGTCTCTTACTTGTTTGATCAATCATGCACCAGCTCAACTCACATCG
GCTCACATCAACCAGGCCATGCCAGCCTAGCCAAGAAGCTGCTGGACTGG
GGCTCCAGCTATGGCGCTCCAGATGGCAGGGGGCACACACCGCTGTACCT
GGCCCAGCTCAATGGCCACCGCGATGTGGTGTATATGCTGGCACTGCATA
TGGAAGCAACGCTTCATGATGAGGCCGTTCTGGCGACTAGTATTAGCAAG
GCAGCTGAGATGCCCGTGGAGCAGATGCCCAAGCACCTGGCACCACTGCT
CACTCATGTGCTGGATGGCAAGCCAACACAGCTGAAGGCTTGGAAGAGCT
TACTGGGCATGCTGCAGGAGAAGGTCTCTGAGATTGAGGCACACAACAAT
GCACATTCATCACTGCCCAAGAGGAGGCGCCTTAGCAAGGAGCAAACTGA
GAACTTAGTGGAAGCCAAAATGGGAGTGAATGGAGCAACCCTGACAAAGC
AGTTGAGTGAGCTGCAAGAGGCCCAGGTTAATAAAGCTGAGGAAGATGCA
GGCACTGGCGGTGCTACTACTGCACCAGTCACTCCAAGGACTCCTCTTGC
CAAGATCTTCGTGGCAGGGGAGAGCGGGCATTGA
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