mRNA_C-australica_Contig_968.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_968.6.1
Unique NamemRNA_C-australica_Contig_968.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_968.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_968contigC-australica_Contig_968:5535..6019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size365
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588833.6232522-UTR-C-australica_Contig_968:5534..56841682588833.6232522-UTR-C-australica_Contig_968:5534..5684Chrysoparadoxa australica CS_1217UTRC-australica_Contig_968 5535..5684 -
1682588833.647969-UTR-C-australica_Contig_968:5993..60191682588833.647969-UTR-C-australica_Contig_968:5993..6019Chrysoparadoxa australica CS_1217UTRC-australica_Contig_968 5994..6019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588833.6318336-CDS-C-australica_Contig_968:5684..56991682588833.6318336-CDS-C-australica_Contig_968:5684..5699Chrysoparadoxa australica CS_1217CDSC-australica_Contig_968 5685..5699 -
1682588833.640081-CDS-C-australica_Contig_968:5819..59931682588833.640081-CDS-C-australica_Contig_968:5819..5993Chrysoparadoxa australica CS_1217CDSC-australica_Contig_968 5820..5993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_968.6.1prot_C-australica_Contig_968.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_968 5685..5993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_968.6.1

>prot_C-australica_Contig_968.6.1 ID=prot_C-australica_Contig_968.6.1|Name=mRNA_C-australica_Contig_968.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=63bp
MGPGEGDSCVKLWGREGEEIVMSQRFHPPPQTASIISGWMDRGVVGPYQP
RGPGVLKEAAEN*
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mRNA from alignment at C-australica_Contig_968:5535..6019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_968.6.1 ID=mRNA_C-australica_Contig_968.6.1|Name=mRNA_C-australica_Contig_968.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=485bp|location=Sequence derived from alignment at C-australica_Contig_968:5535..6019- (Chrysoparadoxa australica CS_1217)
CAAAGACAGAAGGGCGAGTGTTGTACATGGGCCCAGGAGAAGGAGACAGC
TGTGTGAAGCTCTGGGGGCGCGAGGGAGAGGAGATTGTGATGAGTCAGCG
CTTCCACCCTCCCCCCCAGACTGCATCAATCATCAGTGGATGGATGGATA
GGGGGGTGGTTGGTCCATATCAACCTCGTGGTCCAGGTGTGCTCAAGGAG
GTGAGAGACTGCACTTGGCGGGACCCAAATTGCAGTTGTTCTCTGTTCTC
TGCGTGCTACCTACCTGTTGCATGGTGTCCAAGTCATAATCAAATAACTC
GTCCTGTCCTCCGGGGGAAGGCAGCTGAAAACTAGCTCGTGAATGATAGC
TGAGGTGAGCGGTCAAGTTGGTTAAAATGGTTGTTATCATGGTGATGGAT
CATGTCTGGCCGCTGCCCTACCTAAATTCGGAGCCCAGGGGCATCGGTGA
TAGTGTCTTTGGAGACACTTGCTGGGACCGGGACC
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Coding sequence (CDS) from alignment at C-australica_Contig_968:5535..6019-

>mRNA_C-australica_Contig_968.6.1 ID=mRNA_C-australica_Contig_968.6.1|Name=mRNA_C-australica_Contig_968.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=189bp|location=Sequence derived from alignment at C-australica_Contig_968:5535..6019- (Chrysoparadoxa australica CS_1217)
ATGGGCCCAGGAGAAGGAGACAGCTGTGTGAAGCTCTGGGGGCGCGAGGG
AGAGGAGATTGTGATGAGTCAGCGCTTCCACCCTCCCCCCCAGACTGCAT
CAATCATCAGTGGATGGATGGATAGGGGGGTGGTTGGTCCATATCAACCT
CGTGGTCCAGGTGTGCTCAAGGAGGCAGCTGAAAACTAG
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